Wall clock time and date at job start Sun Mar 29 2020 22:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46920 * 2 1 4 4 C 1.50694 * 109.47079 * 239.99645 * 2 1 3 5 5 H 1.08000 * 120.00074 * 275.10466 * 4 2 1 6 6 C 1.37873 * 120.00246 * 95.10258 * 4 2 1 7 7 N 1.31515 * 120.00226 * 184.90662 * 6 4 2 8 8 Si 1.86803 * 119.99974 * 4.91223 * 6 4 2 9 9 H 1.48509 * 109.46922 * 84.82003 * 8 6 4 10 10 H 1.48494 * 109.47176 * 204.82242 * 8 6 4 11 11 H 1.48501 * 109.46965 * 324.82255 * 8 6 4 12 12 C 1.50699 * 109.46588 * 119.99519 * 2 1 3 13 13 O 1.20828 * 119.99959 * 120.00458 * 12 2 1 14 14 O 1.34231 * 120.00224 * 299.99812 * 12 2 1 15 15 C 1.45206 * 116.99956 * 180.02562 * 14 12 2 16 16 C 1.52990 * 109.46940 * 180.02562 * 15 14 12 17 17 C 1.52997 * 113.00296 * 50.33369 * 16 15 14 18 18 C 1.54037 * 113.81847 * 278.50597 * 16 15 14 19 19 O 1.44442 * 85.42945 * 223.23817 * 18 16 15 20 20 C 1.44180 * 93.37680 * 24.08954 * 19 18 16 21 21 H 1.09001 * 109.47160 * 295.06635 * 1 2 3 22 22 H 1.09006 * 109.46836 * 55.06460 * 1 2 3 23 23 H 1.08999 * 109.47366 * 175.06453 * 1 2 3 24 24 H 0.97001 * 120.00087 * 180.02562 * 7 6 4 25 25 H 1.09005 * 109.46804 * 60.00262 * 15 14 12 26 26 H 1.08996 * 109.46704 * 300.00464 * 15 14 12 27 27 H 1.08996 * 109.47055 * 69.66684 * 17 16 15 28 28 H 1.09000 * 109.47511 * 189.66298 * 17 16 15 29 29 H 1.08998 * 109.47215 * 309.66554 * 17 16 15 30 30 H 1.09005 * 113.86595 * 337.34880 * 18 16 15 31 31 H 1.09005 * 113.86567 * 109.04995 * 18 16 15 32 32 H 1.09007 * 113.86241 * 221.76572 * 20 19 18 33 33 H 1.08995 * 113.98478 * 90.07898 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1339 -1.7857 -1.2295 6 6 2.3623 0.0121 -2.3573 7 7 2.7081 -0.6131 -3.4615 8 14 2.3182 1.8791 -2.3158 9 1 3.6040 2.3928 -1.7789 10 1 2.1126 2.4001 -3.6911 11 1 1.2029 2.3287 -1.4443 12 6 2.0322 -0.7103 1.2305 13 8 2.7269 -1.6927 1.1198 14 8 1.7079 -0.2516 2.4497 15 6 2.2275 -0.9855 3.5898 16 6 1.7554 -0.3189 4.8834 17 6 0.2469 -0.0646 4.9089 18 6 2.5989 0.9013 5.2982 19 8 2.5241 0.3540 6.6329 20 6 2.2948 -0.9890 6.1612 21 1 -0.3633 0.4354 0.9309 22 1 -0.3633 0.5885 -0.8425 23 1 -0.3634 -1.0238 -0.0884 24 1 2.9406 -0.1047 -4.2542 25 1 3.3171 -0.9844 3.5567 26 1 1.8640 -2.0126 3.5570 27 1 -0.2806 -1.0154 4.9854 28 1 -0.0021 0.5591 5.7675 29 1 -0.0514 0.4436 3.9920 30 1 3.6050 0.9051 4.8788 31 1 2.0830 1.8544 5.1815 32 1 1.5382 -1.5321 6.7275 33 1 3.2066 -1.5656 6.0055 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118405240.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:11 Heat of formation + Delta-G solvation = -131.265652 kcal Electronic energy + Delta-G solvation = -16196.430785 eV Core-core repulsion = 13415.617716 eV Total energy + Delta-G solvation = -2780.813069 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.88750 -41.03915 -37.48785 -35.79878 -33.76246 -33.21775 -28.33687 -27.57949 -27.29871 -26.58234 -24.51200 -21.41847 -19.95475 -19.28726 -18.15117 -17.86055 -17.44485 -16.81264 -16.62706 -16.52801 -15.84166 -14.82872 -14.61913 -14.47852 -14.19953 -13.91535 -13.40597 -13.05125 -13.00104 -12.94343 -12.69292 -12.64653 -12.24112 -11.83746 -11.80686 -11.73487 -11.33200 -11.29837 -11.00418 -10.78646 -10.66467 -8.33270 -6.42712 1.34470 1.37808 1.43998 1.50750 1.79910 2.32094 2.65658 3.01719 3.15873 3.64296 3.84993 4.03106 4.22626 4.33644 4.34892 4.37891 4.41771 4.60736 4.68339 4.82783 4.86470 4.91605 4.92797 5.08338 5.09322 5.12225 5.33610 5.39928 5.49466 5.55111 6.19856 6.66331 7.03207 7.21937 8.83645 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.044296 B = 0.006320 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.965475 B = 4429.199193 C = 4537.305079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.018 3.982 3 H 0.081 0.919 4 C -0.519 4.519 5 H 0.029 0.971 6 C 0.015 3.985 7 N -0.943 5.943 8 Si 0.940 3.060 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.224 1.224 12 C 0.468 3.532 13 O -0.543 6.543 14 O -0.351 6.351 15 C 0.065 3.935 16 C -0.125 4.125 17 C -0.125 4.125 18 C 0.042 3.958 19 O -0.397 6.397 20 C 0.051 3.949 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.042 0.958 24 H 0.271 0.729 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.656 5.327 17.823 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.001 4.001 3 H 0.098 0.902 4 C -0.557 4.557 5 H 0.048 0.952 6 C -0.183 4.183 7 N -0.581 5.581 8 Si 0.762 3.238 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.147 1.147 12 C 0.313 3.687 13 O -0.432 6.432 14 O -0.268 6.268 15 C -0.009 4.009 16 C -0.126 4.126 17 C -0.182 4.182 18 C -0.034 4.034 19 O -0.317 6.317 20 C -0.025 4.025 21 H 0.093 0.907 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.380 5.148 17.906 19.139 hybrid contribution 0.614 -0.113 -0.824 1.034 sum -3.766 5.035 17.082 18.203 Atomic orbital electron populations 1.21823 0.92969 1.01530 1.02171 1.19155 0.96911 0.97032 0.87015 0.90155 1.20836 1.44805 0.94052 0.95975 0.95227 1.25999 0.93402 1.04574 0.94301 1.70040 1.46718 1.38584 1.02788 0.85847 0.80802 0.78451 0.78722 1.19164 1.20604 1.14663 1.24864 0.76298 0.82717 0.84851 1.90539 1.37219 1.27961 1.87466 1.86541 1.69870 1.55697 1.14706 1.23218 0.98662 0.95872 0.83180 1.23862 0.99494 0.96930 0.92293 1.21520 0.90591 1.02963 1.03104 1.24274 0.99744 0.98257 0.81127 1.89688 1.94331 1.21166 1.26475 1.24206 1.01043 0.86247 0.91027 0.90670 0.91776 0.93910 0.92030 0.91595 0.91327 0.91107 0.90760 0.91511 0.89711 0.87623 0.86672 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.14 71.98 0.66 -4.15 16 2 C 0.02 0.84 2.40 -12.29 -0.03 0.81 16 3 H 0.08 3.40 5.29 -2.39 -0.01 3.39 16 4 C -0.52 -30.01 8.36 25.60 0.21 -29.79 16 5 H 0.03 1.99 7.62 -2.91 -0.02 1.97 16 6 C 0.02 0.88 5.47 84.65 0.46 1.34 16 7 N -0.94 -58.56 13.96 21.45 0.30 -58.26 16 8 Si 0.94 41.12 26.99 68.60 1.85 42.97 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.22 -8.44 6.82 99.48 0.68 -7.76 16 12 C 0.47 20.61 7.25 71.24 0.52 21.13 16 13 O -0.54 -28.04 15.52 21.96 0.34 -27.70 16 14 O -0.35 -12.02 9.10 -51.42 -0.47 -12.49 16 15 C 0.06 1.80 4.93 71.98 0.35 2.15 16 16 C -0.13 -2.63 1.23 -51.48 -0.06 -2.69 16 17 C -0.12 -2.35 9.03 71.98 0.65 -1.70 16 18 C 0.04 0.87 8.34 72.30 0.60 1.48 16 19 O -0.40 -8.92 12.39 -148.98 -1.85 -10.76 16 20 C 0.05 0.91 8.37 72.30 0.60 1.51 16 21 H 0.07 2.28 8.00 -2.39 -0.02 2.26 16 22 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 23 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.07 1.87 7.98 -2.38 -0.02 1.85 16 26 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.24 8.06 -2.39 -0.02 1.22 16 29 H 0.07 1.40 7.41 -2.39 -0.02 1.38 16 30 H 0.08 1.71 7.99 -2.38 -0.02 1.69 16 31 H 0.11 1.94 8.10 -2.38 -0.02 1.92 16 32 H 0.12 1.57 8.10 -2.38 -0.02 1.55 16 33 H 0.09 1.46 8.10 -2.39 -0.02 1.44 16 Total: -1.00 -70.63 280.99 5.20 -65.42 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.06 Total: 10.74 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 3.97 Total: -9.92 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.30 Total: -58.26 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -1.97 Total: -50.95 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.85 Total: 42.97 kcal Total: -70.63 5.20 -65.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118405240.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.843 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds