Wall clock time and date at job start Sun Mar 29 2020 22:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47457 * 299.99915 * 3 2 1 6 6 H 1.48501 * 109.47104 * 59.99987 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.35048 * 126.03665 * 124.99929 * 13 12 10 15 15 C 1.35374 * 107.73000 * 179.97438 * 14 13 12 16 16 Cl 1.73604 * 126.04389 * 179.97438 * 15 14 13 17 17 C 1.39921 * 107.90738 * 359.97438 * 15 14 13 18 18 N 1.30855 * 108.21413 * 359.75819 * 17 15 14 19 19 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 20 20 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 21 21 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 22 22 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 23 23 H 1.08005 * 126.13346 * 359.94591 * 14 13 12 24 24 H 1.07999 * 125.89618 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 2.2363 -6.9877 0.8925 15 6 3.2565 -7.8061 0.5435 16 17 3.7324 -9.2556 1.3719 17 6 3.8595 -7.2772 -0.6030 18 7 3.2212 -6.1837 -0.9334 19 1 -0.4850 0.8401 -0.0004 20 1 0.3535 -2.3906 0.0002 21 1 0.6170 -4.9209 0.8886 22 1 0.6176 -4.9205 -0.8913 23 1 1.5736 -7.1195 1.7351 24 1 4.7037 -7.7004 -1.1270 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307061720.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:02 Heat of formation + Delta-G solvation = 14.763358 kcal Electronic energy + Delta-G solvation = -13148.733654 eV Core-core repulsion = 10510.162693 eV Total energy + Delta-G solvation = -2638.570960 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.22325 -40.01452 -37.32265 -36.08221 -34.20309 -33.27079 -31.01067 -28.84879 -26.48976 -22.73984 -22.12622 -21.10106 -20.02685 -18.22883 -17.99359 -16.69414 -16.38149 -15.86339 -15.54727 -15.24433 -15.04325 -14.32749 -14.13575 -13.56470 -13.40026 -12.92664 -12.61100 -12.46292 -12.28680 -12.14406 -11.57586 -11.38818 -10.87022 -10.27279 -10.07410 -9.35621 -8.51903 -6.00857 0.78480 1.04336 1.33677 1.41414 1.54638 1.68465 1.85113 1.93080 2.27400 2.99356 3.14836 3.74109 3.88740 4.08149 4.24029 4.28243 4.59031 4.67557 5.37312 5.42673 5.80247 5.96974 6.52414 6.63121 7.06673 7.44985 8.01201 8.64910 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.074186 B = 0.005067 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.338037 B = 5524.547725 C = 5657.709625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.991 3.009 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.335 4.335 8 H 0.075 0.925 9 N -0.562 5.562 10 C 0.422 3.578 11 O -0.617 6.617 12 C 0.130 3.870 13 N -0.353 5.353 14 C 0.077 3.923 15 C -0.201 4.201 16 Cl -0.036 7.036 17 C 0.047 3.953 18 N -0.303 5.303 19 H 0.280 0.720 20 H 0.401 0.599 21 H 0.162 0.838 22 H 0.129 0.871 23 H 0.221 0.779 24 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 -13.312 2.618 13.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.207 4.207 3 Si 0.814 3.186 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.465 4.465 8 H 0.093 0.907 9 N -0.200 5.200 10 C 0.208 3.792 11 O -0.503 6.503 12 C 0.005 3.995 13 N -0.134 5.134 14 C -0.070 4.070 15 C -0.239 4.239 16 Cl -0.008 7.008 17 C -0.140 4.140 18 N -0.123 5.123 19 H 0.089 0.911 20 H 0.236 0.764 21 H 0.180 0.820 22 H 0.146 0.854 23 H 0.237 0.763 24 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.793 -12.169 1.853 12.335 hybrid contribution 0.127 0.171 0.546 0.586 sum -0.666 -11.999 2.398 12.254 Atomic orbital electron populations 1.69648 1.06639 1.29469 1.49648 1.25972 0.96537 1.02193 0.95949 0.84906 0.77910 0.77244 0.78497 1.20212 1.19503 1.19321 1.19630 0.92580 0.83914 1.50326 0.90731 1.41797 1.09492 1.04255 1.64429 1.20788 0.88454 0.86209 0.83707 1.90590 1.15840 1.87575 1.56316 1.21639 0.88518 0.80801 1.08508 1.48021 1.25191 1.19218 1.20976 1.22861 0.99832 0.88023 0.96295 1.20800 1.04162 0.97132 1.01844 1.98298 1.91447 1.33701 1.77366 1.24310 1.00832 0.92595 0.96308 1.77611 1.01739 1.17742 1.15231 0.91061 0.76376 0.82040 0.85367 0.76272 0.77602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.27 13.05 21.66 0.28 -46.98 14 2 C -0.01 -0.30 5.50 84.92 0.47 0.17 14 3 Si 0.99 42.11 29.55 68.60 2.03 44.13 14 4 H -0.28 -12.13 7.11 99.48 0.71 -11.43 14 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 14 6 H -0.27 -10.83 7.11 99.48 0.71 -10.12 14 7 C -0.33 -18.60 9.68 84.04 0.81 -17.79 14 8 H 0.07 4.52 7.16 -2.91 -0.02 4.50 14 9 N -0.56 -27.36 5.29 -306.98 -1.62 -28.98 14 10 C 0.42 19.32 7.81 87.66 0.68 20.00 14 11 O -0.62 -34.68 15.30 -3.07 -0.05 -34.73 14 12 C 0.13 3.97 6.99 85.63 0.60 4.57 14 13 N -0.35 -11.62 3.40 -351.66 -1.19 -12.81 14 14 C 0.08 2.00 11.43 83.54 0.95 2.96 14 15 C -0.20 -5.42 6.65 22.02 0.15 -5.27 14 16 Cl -0.04 -0.80 29.30 -2.72 -0.08 -0.88 14 17 C 0.05 1.43 12.02 85.25 1.02 2.46 14 18 N -0.30 -11.55 11.66 -56.98 -0.66 -12.22 14 19 H 0.28 13.51 8.31 -92.71 -0.77 12.74 14 20 H 0.40 17.87 7.90 -92.71 -0.73 17.14 14 21 H 0.16 3.36 8.07 -2.39 -0.02 3.34 14 22 H 0.13 3.34 8.14 -2.39 -0.02 3.32 14 23 H 0.22 3.59 8.06 -2.91 -0.02 3.57 14 24 H 0.21 5.00 8.06 -2.91 -0.02 4.97 14 Total: -1.00 -71.52 244.64 3.90 -67.62 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.51 Total: 17.75 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 4.69 Total: 7.10 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -3.20 Total: -100.99 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.05 Total: -34.73 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -71.52 3.90 -67.62 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307061720.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.384 kcal (2) G-P(sol) polarization free energy of solvation -71.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds