Wall clock time and date at job start Sun Mar 29 2020 22:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86798 * 120.00052 * 2 1 4 4 H 1.48503 * 109.47382 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46738 * 299.99648 * 3 2 1 6 6 H 1.48494 * 109.47440 * 59.99442 * 3 2 1 7 7 C 1.38983 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99917 * 180.02562 * 7 2 1 9 9 N 1.37320 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.36497 * 126.07148 * 180.02562 * 9 7 2 11 11 C 1.35679 * 107.50848 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.07814 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99527 * 179.97438 * 12 11 10 14 14 O 1.21303 * 120.00450 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.72943 * 13 12 11 16 16 Cl 1.80302 * 109.47377 * 180.28032 * 15 13 12 17 17 C 1.40649 * 107.83573 * 0.22685 * 11 10 9 18 18 N 1.30903 * 108.38945 * 359.60960 * 17 11 10 19 19 H 0.97004 * 120.00252 * 0.02562 * 1 2 3 20 20 H 1.07996 * 126.24207 * 0.04819 * 10 9 7 21 21 H 0.97001 * 119.99988 * 0.02562 * 12 11 10 22 22 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 23 23 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 24 24 H 1.07999 * 125.80209 * 179.74829 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3464 0.0006 5 1 1.8882 2.3963 -1.2126 6 1 1.8882 2.3965 1.2124 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8749 -3.6405 0.0015 11 6 0.8577 -4.5384 0.0006 12 7 0.9890 -5.9382 0.0006 13 6 -0.1102 -6.7181 0.0001 14 8 -1.2128 -6.2123 -0.0009 15 6 0.0305 -8.2185 -0.0061 16 17 -1.6059 -8.9756 -0.0136 17 6 -0.3513 -3.8198 -0.0064 18 7 -0.0716 -2.5410 -0.0010 19 1 -0.4851 0.8401 -0.0004 20 1 2.9300 -3.8708 0.0032 21 1 1.8707 -6.3427 0.0017 22 1 0.5782 -8.5285 -0.8961 23 1 0.5737 -8.5362 0.8839 24 1 -1.3419 -4.2499 -0.0126 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307339925.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:05 Heat of formation + Delta-G solvation = 40.325526 kcal Electronic energy + Delta-G solvation = -13268.938605 eV Core-core repulsion = 10631.476104 eV Total energy + Delta-G solvation = -2637.462502 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.93198 -38.57740 -35.92797 -34.26319 -33.20720 -30.40469 -29.49183 -27.26682 -24.74401 -21.20489 -20.43516 -19.46513 -17.61613 -16.56401 -15.51721 -15.44515 -15.41967 -14.23388 -13.54781 -13.52247 -13.45554 -12.89667 -12.77381 -11.70850 -11.46101 -11.29089 -10.97094 -10.70883 -10.51978 -10.49222 -10.22422 -9.29095 -9.20387 -8.83471 -8.08717 -6.75010 -6.57681 -4.25371 2.04284 2.71677 2.99031 3.04048 3.10207 3.52703 3.63770 3.84818 4.37145 4.64601 4.94305 4.96141 5.00694 5.11526 6.20718 6.40698 6.84001 6.92353 7.05793 7.20615 7.83345 8.08644 8.23846 8.57471 8.76684 9.35206 9.64291 10.38351 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.100359 B = 0.005259 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.932560 B = 5322.632231 C = 5586.413052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.142 5.142 10 C -0.083 4.083 11 C -0.062 4.062 12 N -0.621 5.621 13 C 0.485 3.515 14 O -0.513 6.513 15 C -0.055 4.055 16 Cl -0.140 7.140 17 C -0.031 4.031 18 N -0.260 5.260 19 H 0.275 0.725 20 H 0.146 0.854 21 H 0.398 0.602 22 H 0.117 0.883 23 H 0.117 0.883 24 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.065 -11.163 -0.015 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.456 4.456 8 H 0.135 0.865 9 N 0.090 4.910 10 C -0.234 4.234 11 C -0.168 4.168 12 N -0.264 5.264 13 C 0.269 3.731 14 O -0.388 6.388 15 C -0.122 4.122 16 Cl -0.114 7.114 17 C -0.207 4.207 18 N -0.091 5.091 19 H 0.085 0.915 20 H 0.163 0.837 21 H 0.231 0.769 22 H 0.135 0.865 23 H 0.135 0.865 24 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.452 -9.511 -0.013 10.119 hybrid contribution 1.314 -0.478 0.003 1.398 sum 4.766 -9.989 -0.011 11.068 Atomic orbital electron populations 1.70227 1.06153 1.27945 1.35234 1.25653 0.95710 1.00314 0.95461 0.85757 0.79609 0.80224 0.78509 1.18678 1.19883 1.19891 1.19928 0.91690 0.80528 1.53413 0.86533 1.44575 1.04068 1.03327 1.38990 1.21249 0.96809 0.85371 1.19983 1.17242 0.94377 0.80968 1.24200 1.42373 1.07894 1.04663 1.71476 1.20104 0.85204 0.88086 0.79752 1.90681 1.25441 1.74242 1.48475 1.24113 0.87878 0.93446 1.06760 1.98729 1.30781 1.82436 1.99407 1.24127 0.98056 0.90748 1.07768 1.78270 0.90101 1.15064 1.25704 0.91460 0.83655 0.76940 0.86486 0.86497 0.80684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.51 11.81 55.49 0.66 -20.85 14 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 14 3 Si 0.94 18.80 29.55 -169.99 -5.02 13.77 14 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 14 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 7 C -0.32 -8.50 10.25 -14.82 -0.15 -8.66 14 8 H 0.12 2.73 7.83 -52.49 -0.41 2.32 14 9 N -0.14 -3.88 3.74 -11.41 -0.04 -3.93 14 10 C -0.08 -1.92 11.49 -16.39 -0.19 -2.11 14 11 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 14 12 N -0.62 -10.36 5.47 -10.00 -0.05 -10.41 14 13 C 0.48 8.01 7.84 -10.98 -0.09 7.92 14 14 O -0.51 -10.90 13.16 5.54 0.07 -10.83 14 15 C -0.06 -0.60 7.14 36.01 0.26 -0.34 14 16 Cl -0.14 -1.86 28.37 -51.86 -1.47 -3.33 14 17 C -0.03 -0.83 10.85 -17.04 -0.18 -1.01 14 18 N -0.26 -7.59 10.40 30.80 0.32 -7.27 14 19 H 0.27 7.00 8.31 -40.82 -0.34 6.66 14 20 H 0.15 2.76 8.06 -52.49 -0.42 2.34 14 21 H 0.40 4.77 8.83 -40.82 -0.36 4.41 14 22 H 0.12 0.90 8.14 -51.92 -0.42 0.48 14 23 H 0.12 0.90 8.14 -51.93 -0.42 0.48 14 24 H 0.18 4.60 5.92 -52.49 -0.31 4.29 14 LS Contribution 239.01 15.07 3.60 3.60 Total: -1.00 -33.63 239.01 -4.46 -38.08 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -1.48 Total: 6.27 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.03 Total: -5.11 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.88 Total: -42.46 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -1.47 Total: -3.33 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -33.63 -4.46 -38.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307339925.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.408 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds