Wall clock time and date at job start Sun Mar 29 2020 22:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86798 * 120.00052 * 2 1 4 4 H 1.48503 * 109.47382 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46738 * 299.99648 * 3 2 1 6 6 H 1.48494 * 109.47440 * 59.99442 * 3 2 1 7 7 C 1.38983 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99917 * 180.02562 * 7 2 1 9 9 N 1.37320 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.36497 * 126.07148 * 180.02562 * 9 7 2 11 11 C 1.35679 * 107.50848 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.07814 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99527 * 179.97438 * 12 11 10 14 14 O 1.21303 * 120.00450 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.72943 * 13 12 11 16 16 Cl 1.80302 * 109.47377 * 180.28032 * 15 13 12 17 17 C 1.40649 * 107.83573 * 0.22685 * 11 10 9 18 18 N 1.30903 * 108.38945 * 359.60960 * 17 11 10 19 19 H 0.97004 * 120.00252 * 0.02562 * 1 2 3 20 20 H 1.07996 * 126.24207 * 0.04819 * 10 9 7 21 21 H 0.97001 * 119.99988 * 0.02562 * 12 11 10 22 22 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 23 23 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 24 24 H 1.07999 * 125.80209 * 179.74829 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3464 0.0006 5 1 1.8882 2.3963 -1.2126 6 1 1.8882 2.3965 1.2124 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8749 -3.6405 0.0015 11 6 0.8577 -4.5384 0.0006 12 7 0.9890 -5.9382 0.0006 13 6 -0.1102 -6.7181 0.0001 14 8 -1.2128 -6.2123 -0.0009 15 6 0.0305 -8.2185 -0.0061 16 17 -1.6059 -8.9756 -0.0136 17 6 -0.3513 -3.8198 -0.0064 18 7 -0.0716 -2.5410 -0.0010 19 1 -0.4851 0.8401 -0.0004 20 1 2.9300 -3.8708 0.0032 21 1 1.8707 -6.3427 0.0017 22 1 0.5782 -8.5285 -0.8961 23 1 0.5737 -8.5362 0.8839 24 1 -1.3419 -4.2499 -0.0126 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307339925.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:04 Heat of formation + Delta-G solvation = 15.300521 kcal Electronic energy + Delta-G solvation = -13270.023771 eV Core-core repulsion = 10631.476104 eV Total energy + Delta-G solvation = -2638.547667 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.69188 -40.15569 -36.91955 -35.91635 -34.98309 -32.30549 -30.86275 -28.89019 -26.61693 -22.94598 -22.07493 -21.21003 -19.36350 -17.96941 -17.39125 -17.03681 -16.62932 -15.81545 -15.28301 -15.03554 -14.82077 -14.42260 -14.05768 -13.48598 -13.29086 -12.92528 -12.84488 -12.02124 -11.86631 -11.77598 -11.42896 -11.02791 -10.83976 -10.69953 -10.10344 -8.53341 -8.46626 -6.24237 1.09679 1.20224 1.41079 1.49688 1.59977 1.86338 2.08490 2.33440 2.51042 2.90132 3.09754 3.79774 4.19172 4.26559 4.44895 4.61355 5.00897 5.07584 5.30103 5.45624 5.96616 6.31564 6.70876 6.74421 7.36562 7.47713 7.68835 8.53087 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.100359 B = 0.005259 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.932560 B = 5322.632231 C = 5586.413052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.008 4.008 3 Si 1.019 2.981 4 H -0.239 1.239 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.354 4.354 8 H 0.143 0.857 9 N -0.170 5.170 10 C -0.078 4.078 11 C -0.045 4.045 12 N -0.610 5.610 13 C 0.481 3.519 14 O -0.565 6.565 15 C -0.040 4.040 16 Cl -0.163 7.163 17 C -0.061 4.061 18 N -0.313 5.313 19 H 0.276 0.724 20 H 0.191 0.809 21 H 0.425 0.575 22 H 0.159 0.841 23 H 0.159 0.841 24 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.882 -12.463 -0.013 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.162 1.162 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.160 0.840 9 N 0.061 4.939 10 C -0.228 4.228 11 C -0.151 4.151 12 N -0.257 5.257 13 C 0.267 3.733 14 O -0.443 6.443 15 C -0.105 4.105 16 Cl -0.137 7.137 17 C -0.236 4.236 18 N -0.145 5.145 19 H 0.085 0.915 20 H 0.208 0.792 21 H 0.263 0.737 22 H 0.177 0.823 23 H 0.177 0.823 24 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.318 -10.881 -0.012 12.583 hybrid contribution 0.443 -0.258 0.003 0.513 sum 6.761 -11.139 -0.009 13.030 Atomic orbital electron populations 1.70412 1.08506 1.29010 1.37576 1.26894 0.96448 1.04419 0.94147 0.84530 0.79121 0.74379 0.78130 1.16153 1.19869 1.19880 1.20674 0.92998 0.80865 1.53921 0.83984 1.44868 1.03586 1.04939 1.40494 1.22043 0.98923 0.84078 1.17745 1.17310 0.92631 0.83833 1.21374 1.42300 1.09792 1.02179 1.71408 1.21204 0.84100 0.90502 0.77456 1.90679 1.27556 1.75811 1.50251 1.24313 0.87006 0.88293 1.10910 1.98739 1.33017 1.82403 1.99506 1.24173 0.99138 0.90998 1.09299 1.78160 0.92170 1.16692 1.27485 0.91459 0.79161 0.73745 0.82299 0.82299 0.81756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.05 11.81 21.66 0.26 -47.79 14 2 C -0.01 -0.40 5.50 84.95 0.47 0.06 14 3 Si 1.02 38.37 29.55 68.60 2.03 40.40 14 4 H -0.24 -7.96 7.11 99.48 0.71 -7.25 14 5 H -0.27 -10.16 7.11 99.48 0.71 -9.46 14 6 H -0.27 -10.17 7.11 99.48 0.71 -9.46 14 7 C -0.35 -18.55 10.25 84.01 0.86 -17.69 14 8 H 0.14 6.40 7.83 -2.91 -0.02 6.38 14 9 N -0.17 -9.35 3.74 -190.02 -0.71 -10.06 14 10 C -0.08 -3.46 11.49 83.37 0.96 -2.50 14 11 C -0.05 -2.00 6.90 37.73 0.26 -1.74 14 12 N -0.61 -18.63 5.47 -303.92 -1.66 -20.29 14 13 C 0.48 14.80 7.84 87.66 0.69 15.49 14 14 O -0.56 -23.98 13.16 -3.10 -0.04 -24.02 14 15 C -0.04 -0.70 7.14 71.24 0.51 -0.19 14 16 Cl -0.16 -4.00 28.37 -2.72 -0.08 -4.08 14 17 C -0.06 -3.30 10.85 85.42 0.93 -2.38 14 18 N -0.31 -18.95 10.40 -56.47 -0.59 -19.54 14 19 H 0.28 14.71 8.31 -92.71 -0.77 13.94 14 20 H 0.19 6.49 8.06 -2.91 -0.02 6.46 14 21 H 0.42 8.26 8.83 -92.71 -0.82 7.44 14 22 H 0.16 1.56 8.14 -2.38 -0.02 1.54 14 23 H 0.16 1.56 8.14 -2.39 -0.02 1.54 14 24 H 0.17 9.13 5.92 -2.91 -0.02 9.11 14 Total: -1.00 -78.38 239.01 4.31 -74.08 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.43 Total: 20.24 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 4.67 Total: -8.95 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -2.70 Total: -97.68 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.04 Total: -24.02 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Atomic # 17 Polarization: -4.00 SS G_CDS: -0.08 Total: -4.08 kcal Total: -78.38 4.31 -74.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307339925.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.378 kcal (2) G-P(sol) polarization free energy of solvation -78.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds