Wall clock time and date at job start Sun Mar 29 2020 21:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47254 * 2 1 4 4 C 1.47017 * 110.99979 * 66.04540 * 3 2 1 5 5 C 1.53097 * 109.26114 * 182.38895 * 4 3 2 6 6 O 1.43015 * 109.25729 * 303.15818 * 5 4 3 7 7 C 1.43011 * 113.74287 * 58.66733 * 6 5 4 8 8 H 1.09000 * 109.50993 * 61.26309 * 7 6 5 9 9 C 1.50700 * 109.50464 * 181.39313 * 7 6 5 10 10 O 1.21287 * 120.00013 * 5.00213 * 9 7 6 11 11 N 1.34781 * 119.99521 * 184.99391 * 9 7 6 12 12 C 1.37103 * 119.99800 * 179.97438 * 11 9 7 13 13 H 1.08007 * 119.99736 * 0.02562 * 12 11 9 14 14 C 1.38946 * 120.00059 * 180.02562 * 12 11 9 15 15 N 1.31412 * 120.00088 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99912 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46928 * 90.00426 * 16 14 12 18 18 H 1.48498 * 109.46747 * 210.00238 * 16 14 12 19 19 H 1.48496 * 109.46924 * 330.00196 * 16 14 12 20 20 C 1.47007 * 111.00177 * 189.68009 * 3 2 1 21 21 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 300.00004 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99633 * 1 2 3 24 24 H 1.09002 * 109.47153 * 239.99996 * 2 1 3 25 25 H 1.09001 * 109.46832 * 120.00187 * 2 1 3 26 26 H 1.09000 * 109.50700 * 302.32682 * 4 3 2 27 27 H 1.09007 * 109.50617 * 62.45609 * 4 3 2 28 28 H 1.09010 * 109.50310 * 63.08808 * 5 4 3 29 29 H 1.08997 * 109.50631 * 183.21415 * 5 4 3 30 30 H 0.96996 * 120.00180 * 0.02562 * 11 9 7 31 31 H 0.96998 * 119.99970 * 179.97438 * 15 14 12 32 32 H 1.09004 * 109.50639 * 297.54367 * 20 3 2 33 33 H 1.08997 * 109.50784 * 57.67503 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6699 2.0675 1.2543 5 6 2.1453 3.5212 1.1878 6 8 3.5522 3.5461 0.9318 7 6 3.9282 2.8909 -0.2825 8 1 3.4549 3.3908 -1.1275 9 6 5.4260 2.9438 -0.4398 10 8 6.1128 3.4075 0.4458 11 7 6.0023 2.4758 -1.5647 12 6 7.3649 2.5244 -1.7082 13 1 7.9765 2.9375 -0.9196 14 6 7.9591 2.0424 -2.8681 15 7 9.2652 2.0886 -3.0054 16 14 6.9012 1.3274 -4.2317 17 1 6.5139 2.4068 -5.1752 18 1 7.6696 0.2858 -4.9596 19 1 5.6795 0.7214 -3.6442 20 6 3.4708 1.4307 -0.2308 21 1 -0.3635 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 0.5889 2.0440 1.3923 27 1 2.1552 1.5637 2.0904 28 1 1.6201 4.0395 0.3854 29 1 1.9392 4.0153 2.1372 30 1 5.4530 2.1052 -2.2731 31 1 9.6799 1.7518 -3.8149 32 1 3.9849 0.9168 0.5815 33 1 3.7045 0.9425 -1.1768 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610257708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:31 Heat of formation + Delta-G solvation = -69.818800 kcal Electronic energy + Delta-G solvation = -16373.977642 eV Core-core repulsion = 13628.121860 eV Total energy + Delta-G solvation = -2745.855783 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82329 -37.88294 -35.98879 -33.97438 -31.99203 -31.15971 -30.84234 -27.13509 -24.77012 -24.00833 -22.29889 -20.42921 -19.42098 -18.50913 -16.58107 -16.14812 -15.67514 -15.28234 -15.07939 -14.86621 -14.30901 -13.91397 -13.54787 -13.11493 -13.11173 -12.57293 -12.17094 -12.09817 -11.93348 -11.70556 -11.37583 -11.16974 -10.96062 -10.65055 -10.51714 -9.99225 -9.62701 -9.45725 -8.49152 -8.43941 -8.21657 -6.33384 -3.85400 3.00888 3.06089 3.14044 3.51629 3.73068 3.84693 4.08396 4.72030 4.84977 4.91706 5.01861 5.12836 5.21419 5.23040 5.31147 5.39997 5.44586 5.57516 5.65428 5.72963 5.81889 5.85244 5.91304 5.99496 6.08356 6.86889 6.90540 7.29610 7.57423 8.09547 8.56843 8.91605 9.37873 9.77191 10.79397 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.031255 B = 0.007769 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.630009 B = 3603.098388 C = 4303.057901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 N -0.537 5.537 4 C 0.014 3.986 5 C 0.061 3.939 6 O -0.352 6.352 7 C 0.086 3.914 8 H 0.079 0.921 9 C 0.457 3.543 10 O -0.555 6.555 11 N -0.583 5.583 12 C -0.306 4.306 13 H 0.121 0.879 14 C 0.044 3.956 15 N -0.878 5.878 16 Si 0.878 3.122 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.269 1.269 20 C 0.029 3.971 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.371 0.629 31 H 0.274 0.726 32 H 0.051 0.949 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.291 -4.049 2.631 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 N -0.263 5.263 4 C -0.114 4.114 5 C -0.017 4.017 6 O -0.269 6.269 7 C 0.024 3.976 8 H 0.097 0.903 9 C 0.242 3.758 10 O -0.436 6.436 11 N -0.224 5.224 12 C -0.434 4.434 13 H 0.139 0.861 14 C -0.160 4.160 15 N -0.518 5.518 16 Si 0.704 3.296 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.194 1.194 20 C -0.100 4.100 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.053 0.947 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.204 0.796 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.706 -3.438 2.852 18.260 hybrid contribution -0.531 -1.249 -0.718 1.535 sum -18.236 -4.687 2.134 18.949 Atomic orbital electron populations 1.21788 0.94780 1.01490 1.02420 1.22109 0.96056 0.88659 1.01157 1.62283 1.13524 1.16099 1.34386 1.22869 1.01415 0.96212 0.90934 1.22689 0.82595 0.94696 1.01706 1.88156 1.21901 1.76579 1.40293 1.21926 0.95169 0.91916 0.88590 0.90325 1.19239 0.87471 0.84872 0.84238 1.90585 1.63653 1.48221 1.41108 1.42110 1.08127 1.55993 1.16124 1.19437 0.79952 1.39157 1.04871 0.86134 1.25021 0.95732 0.97626 0.97580 1.69617 1.08546 1.45649 1.27992 0.86696 0.80291 0.79875 0.82721 1.19432 1.20066 1.19440 1.22739 0.87351 0.97256 1.02642 0.92310 0.92733 0.91793 0.90496 0.94721 0.89568 0.93856 0.92432 0.88352 0.79567 0.91514 0.93080 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.84 37.16 0.37 -0.91 16 2 C 0.05 0.52 5.68 -3.83 -0.02 0.50 16 3 N -0.54 -7.11 4.73 -234.31 -1.11 -8.22 16 4 C 0.01 0.17 5.43 -3.71 -0.02 0.15 16 5 C 0.06 0.81 7.01 37.21 0.26 1.07 16 6 O -0.35 -6.70 10.01 -55.06 -0.55 -7.25 16 7 C 0.09 1.62 3.22 -27.83 -0.09 1.53 16 8 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 9 C 0.46 11.06 7.13 -10.98 -0.08 10.98 16 10 O -0.55 -16.05 16.08 -14.28 -0.23 -16.28 16 11 N -0.58 -14.17 5.06 -10.96 -0.06 -14.23 16 12 C -0.31 -8.72 10.16 -14.93 -0.15 -8.87 16 13 H 0.12 3.93 7.39 -52.48 -0.39 3.54 16 14 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 15 N -0.88 -25.60 13.96 55.50 0.77 -24.82 16 16 Si 0.88 19.26 27.74 -169.99 -4.71 14.55 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 20 C 0.03 0.46 4.89 -3.71 -0.02 0.44 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.05 0.45 6.51 -51.93 -0.34 0.11 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 25 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 26 H 0.09 0.83 6.37 -51.93 -0.33 0.49 16 27 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 28 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.37 7.88 5.65 -40.82 -0.23 7.65 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.35 7.97 -51.93 -0.41 0.94 16 LS Contribution 272.51 15.07 4.11 4.11 Total: -1.00 -33.13 272.51 -6.29 -39.42 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.67 Total: 6.73 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 0.15 Total: 5.99 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.39 Total: -47.27 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.78 Total: -23.53 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.13 -6.29 -39.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610257708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.394 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds