Wall clock time and date at job start Sun Mar 29 2020 22:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47665 * 2 1 4 4 O 1.42904 * 109.47207 * 119.99896 * 2 1 3 5 5 C 1.53004 * 109.47289 * 239.99396 * 2 1 3 6 6 N 1.46898 * 109.47347 * 174.11090 * 5 2 1 7 7 C 1.46902 * 111.00034 * 311.52829 * 6 5 2 8 8 C 1.53241 * 109.33611 * 187.25321 * 7 6 5 9 9 N 1.47075 * 108.51969 * 306.16577 * 8 7 6 10 10 C 1.36947 * 120.88015 * 231.16697 * 9 8 7 11 11 H 1.07998 * 120.00057 * 149.41395 * 10 9 8 12 12 C 1.38814 * 119.99781 * 329.40713 * 10 9 8 13 13 N 1.31617 * 120.00033 * 350.39332 * 12 10 9 14 14 Si 1.86801 * 119.99722 * 170.39335 * 12 10 9 15 15 H 1.48499 * 109.47110 * 60.00020 * 14 12 10 16 16 H 1.48497 * 109.47140 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46911 * 299.99865 * 14 12 10 18 18 C 1.47076 * 118.24197 * 51.18972 * 9 8 7 19 19 H 1.09002 * 109.62594 * 68.52071 * 18 9 8 20 20 C 1.52997 * 109.63304 * 189.10290 * 18 9 8 21 21 C 1.46897 * 110.99573 * 75.82642 * 6 5 2 22 22 H 1.08998 * 109.47208 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46675 * 60.00195 * 1 2 3 24 24 H 1.09000 * 109.46700 * 300.00562 * 1 2 3 25 25 H 0.96699 * 113.99993 * 59.99272 * 4 2 1 26 26 H 1.08998 * 109.47475 * 294.11892 * 5 2 1 27 27 H 1.08997 * 109.46594 * 54.11259 * 5 2 1 28 28 H 1.09002 * 109.49133 * 307.20637 * 7 6 5 29 29 H 1.09000 * 109.49616 * 67.29235 * 7 6 5 30 30 H 1.09004 * 109.62730 * 186.45747 * 8 7 6 31 31 H 1.09000 * 109.63143 * 65.88241 * 8 7 6 32 32 H 0.96995 * 119.99728 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.47313 * 179.02738 * 20 18 9 34 34 H 1.08994 * 109.47180 * 299.03181 * 20 18 9 35 35 H 1.08997 * 109.46924 * 59.03023 * 20 18 9 36 36 H 1.09003 * 109.49592 * 292.70391 * 21 6 5 37 37 H 1.08996 * 109.49544 * 52.76495 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7214 -1.2492 6 7 3.5022 -0.5996 -1.3224 7 6 3.9253 0.7923 -1.1184 8 6 5.4307 0.9086 -1.3807 9 7 6.1281 -0.0820 -0.5467 10 6 7.1776 0.2861 0.2524 11 1 7.3648 -0.2426 1.1753 12 6 8.0007 1.3385 -0.1240 13 7 7.8944 1.8589 -1.3283 14 14 9.2593 2.0160 1.0786 15 1 10.2069 0.9390 1.4626 16 1 10.0065 3.1285 0.4388 17 1 8.5647 2.5196 2.2906 18 6 5.6689 -1.4784 -0.5941 19 1 5.8965 -1.9058 -1.5706 20 6 6.3679 -2.2868 0.5007 21 6 4.1541 -1.5008 -0.3629 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 0.5139 0.8900 25 1 1.7210 -1.5952 1.2330 26 1 1.7653 -1.7749 -1.1981 27 1 1.5932 -0.2721 -2.1360 28 1 3.3849 1.4415 -1.8073 29 1 3.7107 1.0911 -0.0923 30 1 5.7713 1.9109 -1.1207 31 1 5.6354 0.7108 -2.4328 32 1 8.4694 2.5946 -1.5911 33 1 6.0130 -3.3171 0.4744 34 1 7.4449 -2.2692 0.3338 35 1 6.1439 -1.8501 1.4739 36 1 3.9363 -1.1700 0.6527 37 1 3.7793 -2.5146 -0.5035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614695663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:02 Heat of formation + Delta-G solvation = -21.438874 kcal Electronic energy + Delta-G solvation = -17282.553907 eV Core-core repulsion = 14674.629130 eV Total energy + Delta-G solvation = -2607.924777 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.04342 -36.75346 -34.18041 -32.22511 -31.02933 -30.20052 -27.26534 -26.18349 -24.38824 -22.47589 -22.05140 -20.39440 -18.88466 -16.54332 -16.01827 -15.79685 -15.01297 -14.52087 -14.40105 -14.11630 -13.66761 -13.36031 -13.00290 -12.45026 -12.32649 -11.87360 -11.64194 -11.47052 -11.16742 -10.90134 -10.79310 -10.77610 -10.59825 -10.44503 -10.37345 -10.00757 -9.72069 -9.60783 -9.33916 -8.40252 -7.50542 -6.46782 -5.67584 -3.13077 3.43484 3.48461 3.49632 4.40528 4.54599 4.60924 4.86649 5.18861 5.23070 5.43488 5.46498 5.50562 5.67581 5.91696 5.99016 6.00005 6.07013 6.10261 6.27731 6.31400 6.42229 6.45799 6.57709 6.65374 6.86592 7.08713 7.17041 7.43520 7.66885 7.77480 7.79532 7.85455 7.93409 8.57405 9.33289 9.96037 10.56485 11.41055 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.035663 B = 0.007914 C = 0.007564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.949044 B = 3537.188420 C = 3701.013654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.061 3.939 3 H 0.103 0.897 4 O -0.554 6.554 5 C 0.024 3.976 6 N -0.528 5.528 7 C 0.030 3.970 8 C 0.180 3.820 9 N -0.589 5.589 10 C -0.245 4.245 11 H 0.067 0.933 12 C 0.001 3.999 13 N -0.909 5.909 14 Si 0.902 3.098 15 H -0.283 1.283 16 H -0.291 1.291 17 H -0.285 1.285 18 C 0.171 3.829 19 H 0.027 0.973 20 C -0.136 4.136 21 C 0.038 3.962 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.367 0.633 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.033 0.967 30 H 0.089 0.911 31 H 0.023 0.977 32 H 0.253 0.747 33 H 0.037 0.963 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.485 -5.171 1.465 13.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.001 3.999 3 H 0.120 0.880 4 O -0.358 6.358 5 C -0.106 4.106 6 N -0.251 5.251 7 C -0.099 4.099 8 C 0.054 3.946 9 N -0.313 5.313 10 C -0.375 4.375 11 H 0.085 0.915 12 C -0.197 4.197 13 N -0.554 5.554 14 Si 0.732 3.268 15 H -0.210 1.210 16 H -0.217 1.217 17 H -0.212 1.212 18 C 0.064 3.936 19 H 0.044 0.956 20 C -0.194 4.194 21 C -0.091 4.091 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.214 0.786 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.922 -4.587 1.024 12.815 hybrid contribution 0.016 0.163 1.123 1.135 sum -11.906 -4.424 2.146 12.881 Atomic orbital electron populations 1.22463 0.96966 1.02070 1.02412 1.22801 0.92610 0.98310 0.86217 0.87952 1.86682 1.76575 1.28491 1.44089 1.22932 0.90638 1.00156 0.96838 1.62215 1.03550 1.08091 1.51238 1.22965 1.00874 0.87618 0.98474 1.20854 0.84778 0.95386 0.93579 1.44109 1.35486 1.01166 1.50567 1.19149 1.03811 1.14855 0.99638 0.91507 1.25149 0.97778 1.01055 0.95749 1.69959 1.40872 1.27203 1.17333 0.86376 0.81457 0.78452 0.80490 1.20962 1.21697 1.21164 1.20507 0.90239 0.86968 0.95929 0.95554 1.21777 1.01309 0.97092 0.99194 1.22848 0.96688 0.94332 0.95206 0.92616 0.91724 0.92233 0.78631 0.91439 0.90606 0.92673 0.94863 0.89333 0.95901 0.93720 0.94374 0.92007 0.92910 0.92387 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 9.53 37.16 0.35 -1.48 16 2 C 0.06 0.81 3.07 -26.73 -0.08 0.73 16 3 H 0.10 1.57 6.11 -51.93 -0.32 1.25 16 4 O -0.55 -8.08 10.57 -35.23 -0.37 -8.45 16 5 C 0.02 0.33 5.26 -3.82 -0.02 0.31 16 6 N -0.53 -9.74 4.83 -234.31 -1.13 -10.87 16 7 C 0.03 0.61 4.59 -3.70 -0.02 0.59 16 8 C 0.18 4.51 5.36 -3.60 -0.02 4.49 16 9 N -0.59 -15.30 3.03 -164.48 -0.50 -15.80 16 10 C -0.24 -6.82 8.64 -15.05 -0.13 -6.95 16 11 H 0.07 1.82 6.26 -52.49 -0.33 1.49 16 12 C 0.00 0.02 5.09 -17.43 -0.09 -0.07 16 13 N -0.91 -26.89 11.00 55.49 0.61 -26.28 16 14 Si 0.90 22.19 29.56 -169.99 -5.03 17.16 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 C 0.17 3.77 3.66 -67.49 -0.25 3.53 16 19 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 20 C -0.14 -2.68 7.96 37.16 0.30 -2.39 16 21 C 0.04 0.72 4.37 -3.70 -0.02 0.71 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.37 3.97 9.05 45.56 0.41 4.38 16 26 H 0.07 0.84 7.85 -51.93 -0.41 0.44 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 1.02 8.11 -51.93 -0.42 0.59 16 29 H 0.03 0.72 6.56 -51.93 -0.34 0.38 16 30 H 0.09 2.44 6.19 -51.93 -0.32 2.12 16 31 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.30 7.62 -51.93 -0.40 0.91 16 35 H 0.05 1.06 7.51 -51.93 -0.39 0.67 16 36 H 0.06 1.16 5.87 -51.93 -0.30 0.85 16 37 H 0.05 0.83 7.93 -51.93 -0.41 0.42 16 LS Contribution 282.18 15.07 4.25 4.25 Total: -1.00 -30.87 282.18 -7.46 -38.32 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.32 Total: 2.18 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 0.03 Total: -0.53 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -1.02 Total: -52.95 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.37 Total: -8.45 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.87 -7.46 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614695663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.886 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds