Wall clock time and date at job start Sun Mar 29 2020 22:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47665 * 2 1 4 4 O 1.42904 * 109.47207 * 119.99896 * 2 1 3 5 5 C 1.53004 * 109.47289 * 239.99396 * 2 1 3 6 6 N 1.46898 * 109.47347 * 174.11090 * 5 2 1 7 7 C 1.46902 * 111.00034 * 311.52829 * 6 5 2 8 8 C 1.53241 * 109.33611 * 187.25321 * 7 6 5 9 9 N 1.47075 * 108.51969 * 306.16577 * 8 7 6 10 10 C 1.36947 * 120.88015 * 231.16697 * 9 8 7 11 11 H 1.07998 * 120.00057 * 149.41395 * 10 9 8 12 12 C 1.38814 * 119.99781 * 329.40713 * 10 9 8 13 13 N 1.31617 * 120.00033 * 350.39332 * 12 10 9 14 14 Si 1.86801 * 119.99722 * 170.39335 * 12 10 9 15 15 H 1.48499 * 109.47110 * 60.00020 * 14 12 10 16 16 H 1.48497 * 109.47140 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46911 * 299.99865 * 14 12 10 18 18 C 1.47076 * 118.24197 * 51.18972 * 9 8 7 19 19 H 1.09002 * 109.62594 * 68.52071 * 18 9 8 20 20 C 1.52997 * 109.63304 * 189.10290 * 18 9 8 21 21 C 1.46897 * 110.99573 * 75.82642 * 6 5 2 22 22 H 1.08998 * 109.47208 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46675 * 60.00195 * 1 2 3 24 24 H 1.09000 * 109.46700 * 300.00562 * 1 2 3 25 25 H 0.96699 * 113.99993 * 59.99272 * 4 2 1 26 26 H 1.08998 * 109.47475 * 294.11892 * 5 2 1 27 27 H 1.08997 * 109.46594 * 54.11259 * 5 2 1 28 28 H 1.09002 * 109.49133 * 307.20637 * 7 6 5 29 29 H 1.09000 * 109.49616 * 67.29235 * 7 6 5 30 30 H 1.09004 * 109.62730 * 186.45747 * 8 7 6 31 31 H 1.09000 * 109.63143 * 65.88241 * 8 7 6 32 32 H 0.96995 * 119.99728 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.47313 * 179.02738 * 20 18 9 34 34 H 1.08994 * 109.47180 * 299.03181 * 20 18 9 35 35 H 1.08997 * 109.46924 * 59.03023 * 20 18 9 36 36 H 1.09003 * 109.49592 * 292.70391 * 21 6 5 37 37 H 1.08996 * 109.49544 * 52.76495 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7214 -1.2492 6 7 3.5022 -0.5996 -1.3224 7 6 3.9253 0.7923 -1.1184 8 6 5.4307 0.9086 -1.3807 9 7 6.1281 -0.0820 -0.5467 10 6 7.1776 0.2861 0.2524 11 1 7.3648 -0.2426 1.1753 12 6 8.0007 1.3385 -0.1240 13 7 7.8944 1.8589 -1.3283 14 14 9.2593 2.0160 1.0786 15 1 10.2069 0.9390 1.4626 16 1 10.0065 3.1285 0.4388 17 1 8.5647 2.5196 2.2906 18 6 5.6689 -1.4784 -0.5941 19 1 5.8965 -1.9058 -1.5706 20 6 6.3679 -2.2868 0.5007 21 6 4.1541 -1.5008 -0.3629 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 0.5139 0.8900 25 1 1.7210 -1.5952 1.2330 26 1 1.7653 -1.7749 -1.1981 27 1 1.5932 -0.2721 -2.1360 28 1 3.3849 1.4415 -1.8073 29 1 3.7107 1.0911 -0.0923 30 1 5.7713 1.9109 -1.1207 31 1 5.6354 0.7108 -2.4328 32 1 8.4694 2.5946 -1.5911 33 1 6.0130 -3.3171 0.4744 34 1 7.4449 -2.2692 0.3338 35 1 6.1439 -1.8501 1.4739 36 1 3.9363 -1.1700 0.6527 37 1 3.7793 -2.5146 -0.5035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614695663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:02 Heat of formation + Delta-G solvation = -45.216103 kcal Electronic energy + Delta-G solvation = -17283.584965 eV Core-core repulsion = 14674.629130 eV Total energy + Delta-G solvation = -2608.955835 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43675 -38.21151 -35.77299 -34.07153 -32.39674 -31.83366 -28.97735 -27.66364 -26.09163 -24.07711 -23.50372 -21.87752 -20.65394 -18.28174 -17.49009 -17.13912 -16.63269 -16.02462 -15.76713 -15.62885 -15.45804 -15.01074 -14.79699 -13.78294 -13.39826 -13.33165 -13.09165 -12.85775 -12.80114 -12.61409 -12.55351 -12.35166 -12.16575 -11.99962 -11.91348 -11.69901 -11.47489 -11.26561 -11.06238 -10.53601 -8.96807 -8.51849 -7.81519 -5.30539 1.45789 1.48187 1.54576 2.52403 3.11966 3.34969 3.50741 3.66680 3.86382 4.18810 4.25297 4.34742 4.41709 4.45560 4.65607 4.66169 4.71688 4.81299 4.86797 4.90993 4.95380 5.05733 5.14720 5.17979 5.28178 5.34375 5.45677 5.57697 5.69817 5.74610 6.25538 6.37748 6.46074 6.88172 7.19869 7.91174 8.46661 9.24955 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.035663 B = 0.007914 C = 0.007564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.949044 B = 3537.188420 C = 3701.013654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.064 3.936 3 H 0.076 0.924 4 O -0.576 6.576 5 C 0.026 3.974 6 N -0.541 5.541 7 C 0.051 3.949 8 C 0.186 3.814 9 N -0.608 5.608 10 C -0.251 4.251 11 H 0.071 0.929 12 C -0.056 4.056 13 N -0.941 5.941 14 Si 0.966 3.034 15 H -0.275 1.275 16 H -0.294 1.294 17 H -0.280 1.280 18 C 0.158 3.842 19 H 0.008 0.992 20 C -0.125 4.125 21 C 0.052 3.948 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.384 0.616 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.021 0.979 30 H 0.055 0.945 31 H -0.008 1.008 32 H 0.248 0.752 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.051 0.949 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 -6.622 2.266 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 H 0.094 0.906 4 O -0.384 6.384 5 C -0.102 4.102 6 N -0.264 5.264 7 C -0.079 4.079 8 C 0.060 3.940 9 N -0.332 5.332 10 C -0.382 4.382 11 H 0.089 0.911 12 C -0.250 4.250 13 N -0.588 5.588 14 Si 0.795 3.205 15 H -0.200 1.200 16 H -0.220 1.220 17 H -0.206 1.206 18 C 0.052 3.948 19 H 0.026 0.974 20 C -0.183 4.183 21 C -0.077 4.077 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.075 0.925 25 H 0.233 0.767 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.011 0.989 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.748 -6.077 1.836 15.143 hybrid contribution 0.535 0.540 0.840 1.133 sum -13.213 -5.538 2.677 14.574 Atomic orbital electron populations 1.22347 0.94123 1.03517 1.02858 1.22675 0.94714 0.96705 0.85507 0.90609 1.86643 1.77221 1.29978 1.44525 1.23040 0.87296 1.02059 0.97789 1.62126 1.06681 1.06367 1.51245 1.22560 0.97422 0.89751 0.98132 1.20601 0.88059 0.93690 0.91676 1.44405 1.35456 1.03077 1.50271 1.19484 1.04013 1.14656 1.00004 0.91117 1.25917 0.99978 1.01770 0.97363 1.70145 1.41850 1.27675 1.19132 0.85355 0.79150 0.77662 0.78366 1.20024 1.22048 1.20630 1.20792 0.93079 0.85042 0.95864 0.97391 1.21671 0.99827 0.99005 0.97821 1.22659 0.94074 0.96124 0.94843 0.90643 0.90609 0.92505 0.76711 0.88907 0.89267 0.90848 0.96067 0.92699 0.98946 0.94319 0.90341 0.94097 0.93472 0.93121 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.53 71.98 0.69 -2.18 16 2 C 0.06 1.55 3.07 30.60 0.09 1.64 16 3 H 0.08 2.24 6.11 -2.39 -0.01 2.23 16 4 O -0.58 -15.38 10.57 -148.98 -1.57 -16.96 16 5 C 0.03 0.65 5.26 86.30 0.45 1.10 16 6 N -0.54 -18.97 4.83 -895.24 -4.32 -23.30 16 7 C 0.05 2.07 4.59 86.38 0.40 2.47 16 8 C 0.19 9.66 5.36 86.35 0.46 10.12 16 9 N -0.61 -32.20 3.03 -674.29 -2.04 -34.24 16 10 C -0.25 -14.26 8.64 84.03 0.73 -13.53 16 11 H 0.07 3.88 6.26 -2.91 -0.02 3.86 16 12 C -0.06 -3.23 5.09 84.86 0.43 -2.80 16 13 N -0.94 -57.77 11.00 21.65 0.24 -57.54 16 14 Si 0.97 46.45 29.56 68.60 2.03 48.47 16 15 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 16 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 C 0.16 6.92 3.66 44.96 0.16 7.08 16 19 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 20 C -0.13 -4.79 7.96 71.98 0.57 -4.21 16 21 C 0.05 1.84 4.37 86.39 0.38 2.22 16 22 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.38 6.97 9.05 -74.06 -0.67 6.30 16 26 H 0.09 1.87 7.85 -2.39 -0.02 1.85 16 27 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 2.68 8.11 -2.39 -0.02 2.66 16 29 H 0.02 0.92 6.56 -2.39 -0.02 0.90 16 30 H 0.05 3.19 6.19 -2.38 -0.01 3.17 16 31 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.04 1.70 7.62 -2.39 -0.02 1.68 16 35 H 0.05 1.83 7.51 -2.39 -0.02 1.81 16 36 H 0.05 1.91 5.87 -2.39 -0.01 1.90 16 37 H 0.08 2.43 7.93 -2.39 -0.02 2.41 16 Total: -1.00 -68.54 282.18 -0.94 -69.48 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.37 Total: 12.17 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.36 Total: 1.91 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -6.13 Total: -115.08 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -1.57 Total: -16.96 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -68.54 -0.94 -69.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614695663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.264 kcal (2) G-P(sol) polarization free energy of solvation -68.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds