Wall clock time and date at job start Sun Mar 29 2020 22:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 Cl 1.73596 * 119.99892 * 2 1 4 4 C 1.33462 * 120.00068 * 180.02562 * 2 1 3 5 5 C 1.46703 * 119.99710 * 13.93439 * 4 2 1 6 6 O 1.21687 * 120.00392 * 6.98976 * 5 4 2 7 7 N 1.34781 * 119.99760 * 186.99817 * 5 4 2 8 8 C 1.36849 * 120.00158 * 176.82830 * 7 5 4 9 9 H 1.08002 * 120.00509 * 227.74832 * 8 7 5 10 10 C 1.39053 * 120.00069 * 47.74745 * 8 7 5 11 11 N 1.31370 * 120.00062 * 190.82683 * 10 8 7 12 12 Si 1.86797 * 119.99711 * 10.82575 * 10 8 7 13 13 H 1.48494 * 109.47430 * 264.53831 * 12 10 8 14 14 H 1.48498 * 109.47591 * 24.53995 * 12 10 8 15 15 H 1.48501 * 109.47045 * 144.53867 * 12 10 8 16 16 C 1.46498 * 120.00099 * 356.82185 * 7 5 4 17 17 C 1.52997 * 117.50088 * 188.95720 * 16 7 5 18 18 C 1.52995 * 60.00232 * 252.51161 * 17 16 7 19 19 H 1.09001 * 109.47204 * 185.84671 * 1 2 3 20 20 H 1.08998 * 109.47428 * 305.84407 * 1 2 3 21 21 H 1.08998 * 109.47265 * 65.84791 * 1 2 3 22 22 H 1.07994 * 120.00203 * 193.92905 * 4 2 1 23 23 H 0.96999 * 119.99562 * 180.02562 * 11 10 8 24 24 H 1.09006 * 115.54926 * 334.67057 * 16 7 5 25 25 H 1.08999 * 117.49886 * 0.02562 * 17 16 7 26 26 H 1.09002 * 117.50033 * 145.02181 * 17 16 7 27 27 H 1.09004 * 117.50317 * 252.51246 * 18 17 16 28 28 H 1.08999 * 117.50345 * 107.48501 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 17 2.3749 1.5034 0.0000 4 6 2.1743 -1.1558 -0.0005 5 6 1.4731 -2.4074 -0.3070 6 8 0.3165 -2.3803 -0.6843 7 7 2.1099 -3.5874 -0.1706 8 6 1.4370 -4.7580 -0.3937 9 1 1.5097 -5.5669 0.3181 10 6 0.6595 -4.9059 -1.5371 11 7 -0.1507 -5.9336 -1.6520 12 14 0.7673 -3.6434 -2.9095 13 1 -0.3147 -2.6397 -2.7450 14 1 2.0861 -2.9630 -2.8540 15 1 0.6162 -4.3236 -4.2209 16 6 3.5225 -3.6170 0.2165 17 6 4.2447 -4.9642 0.1517 18 6 3.8860 -4.3530 1.5077 19 1 -0.3634 -1.0223 0.1047 20 1 -0.3634 0.6018 0.8330 21 1 -0.3634 0.4205 -0.9377 22 1 3.2304 -1.1697 0.2246 23 1 -0.6928 -6.0369 -2.4497 24 1 4.0971 -2.7250 -0.0331 25 1 3.6690 -5.8285 -0.1793 26 1 5.2948 -4.9588 -0.1407 27 1 4.6999 -3.9455 2.1073 28 1 3.0740 -4.8152 2.0691 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900360993.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:58 Heat of formation + Delta-G solvation = 5.736509 kcal Electronic energy + Delta-G solvation = -14255.726511 eV Core-core repulsion = 11720.304460 eV Total energy + Delta-G solvation = -2535.422050 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.17757 -38.44126 -37.77985 -35.27871 -34.25996 -33.50661 -29.37289 -26.86216 -23.75467 -23.06865 -22.39510 -20.71228 -18.69475 -17.90910 -17.37321 -16.56996 -15.96393 -15.54442 -15.24151 -14.84783 -14.77979 -14.44369 -14.10411 -13.30710 -13.19756 -12.74949 -12.46499 -12.37802 -12.21225 -12.15506 -11.92552 -11.70026 -11.25659 -10.86689 -10.27983 -9.93511 -9.32990 -8.42184 -6.27108 0.07650 0.94573 1.29584 1.38406 1.50979 2.19363 2.45935 2.70047 2.94337 3.22751 3.75187 3.93353 4.12813 4.16265 4.29632 4.42254 4.68383 4.85049 4.88979 4.93714 5.12772 5.23095 5.46290 5.49209 5.68983 5.84587 6.68597 6.84614 7.25830 7.77186 8.63919 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.024591 B = 0.011708 C = 0.008896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.369224 B = 2390.998794 C = 3146.838237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.007 3.993 3 Cl -0.059 7.059 4 C -0.204 4.204 5 C 0.482 3.518 6 O -0.572 6.572 7 N -0.440 5.440 8 C -0.330 4.330 9 H 0.070 0.930 10 C 0.041 3.959 11 N -0.912 5.912 12 Si 0.977 3.023 13 H -0.276 1.276 14 H -0.272 1.272 15 H -0.312 1.312 16 C 0.034 3.966 17 C -0.171 4.171 18 C -0.174 4.174 19 H 0.106 0.894 20 H 0.092 0.908 21 H 0.076 0.924 22 H 0.161 0.839 23 H 0.274 0.726 24 H 0.148 0.852 25 H 0.077 0.923 26 H 0.128 0.872 27 H 0.133 0.867 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.379 11.473 4.045 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 Cl -0.030 7.030 4 C -0.226 4.226 5 C 0.277 3.723 6 O -0.461 6.461 7 N -0.158 5.158 8 C -0.458 4.458 9 H 0.087 0.913 10 C -0.163 4.163 11 N -0.549 5.549 12 Si 0.808 3.192 13 H -0.203 1.203 14 H -0.197 1.197 15 H -0.243 1.243 16 C -0.070 4.070 17 C -0.209 4.209 18 C -0.213 4.213 19 H 0.124 0.876 20 H 0.110 0.890 21 H 0.094 0.906 22 H 0.179 0.821 23 H 0.084 0.916 24 H 0.165 0.835 25 H 0.095 0.905 26 H 0.146 0.854 27 H 0.151 0.849 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.788 11.460 3.788 14.930 hybrid contribution -0.314 0.072 -0.641 0.718 sum 8.474 11.532 3.147 14.652 Atomic orbital electron populations 1.21780 0.88539 1.07367 1.03129 1.24017 0.95506 0.86413 0.96240 1.98360 1.76406 1.32160 1.96119 1.22726 1.02270 0.90677 1.06880 1.18689 0.86340 0.85094 0.82206 1.90395 1.19064 1.86035 1.50620 1.43174 1.08453 1.04273 1.59895 1.18537 1.28011 0.93144 1.06085 0.91279 1.26036 0.93736 0.96872 0.99639 1.69750 1.24159 1.31566 1.29467 0.85193 0.79051 0.78935 0.75974 1.20293 1.19719 1.24259 1.22304 0.83055 0.98626 1.02983 1.23209 1.01118 0.96009 1.00522 1.23301 1.03300 1.03886 0.90778 0.87591 0.88980 0.90568 0.82124 0.91642 0.83465 0.90476 0.85444 0.84946 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 9.50 71.23 0.68 -4.29 15 2 C 0.01 0.23 6.54 24.60 0.16 0.39 15 3 Cl -0.06 -1.47 29.00 -2.72 -0.08 -1.55 15 4 C -0.20 -7.04 9.04 23.40 0.21 -6.83 15 5 C 0.48 22.11 5.59 86.45 0.48 22.60 15 6 O -0.57 -30.15 8.53 -4.31 -0.04 -30.19 15 7 N -0.44 -20.52 2.46 -617.59 -1.52 -22.04 15 8 C -0.33 -18.50 8.12 84.11 0.68 -17.82 15 9 H 0.07 4.16 7.84 -2.91 -0.02 4.14 15 10 C 0.04 2.44 5.07 84.96 0.43 2.87 15 11 N -0.91 -56.63 13.95 21.68 0.30 -56.33 15 12 Si 0.98 51.63 24.44 68.60 1.68 53.31 15 13 H -0.28 -15.25 6.42 99.48 0.64 -14.61 15 14 H -0.27 -13.61 6.97 99.48 0.69 -12.92 15 15 H -0.31 -16.11 7.11 99.48 0.71 -15.40 15 16 C 0.03 1.18 5.92 44.99 0.27 1.45 15 17 C -0.17 -5.47 9.83 30.59 0.30 -5.17 15 18 C -0.17 -5.17 10.26 30.59 0.31 -4.85 15 19 H 0.11 4.37 4.62 -30.37 -0.14 4.23 15 20 H 0.09 2.43 8.14 -2.39 -0.02 2.41 15 21 H 0.08 2.40 8.14 -2.39 -0.02 2.38 15 22 H 0.16 4.40 6.19 -2.91 -0.02 4.39 15 23 H 0.27 16.10 8.31 -92.71 -0.77 15.33 15 24 H 0.15 4.02 6.34 -2.38 -0.02 4.00 15 25 H 0.08 3.06 6.98 -2.39 -0.02 3.04 15 26 H 0.13 3.05 8.14 -2.39 -0.02 3.03 15 27 H 0.13 2.79 8.14 -2.38 -0.02 2.77 15 28 H 0.07 2.46 8.14 -2.39 -0.02 2.44 15 Total: -1.00 -68.05 249.74 4.83 -63.22 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 0.96 Total: 5.24 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 3.53 Total: -11.66 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -1.22 Total: -78.37 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.04 Total: -30.19 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 1.68 Total: 53.31 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -68.05 4.83 -63.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900360993.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.957 kcal (2) G-P(sol) polarization free energy of solvation -68.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds