Wall clock time and date at job start Sun Mar 29 2020 21:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21272 * 119.99937 * 2 1 4 4 N 1.34774 * 119.99697 * 179.73172 * 2 1 3 5 5 C 1.46500 * 119.99963 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.45524 * 324.96853 * 5 4 2 7 7 C 1.53036 * 109.46148 * 84.92313 * 5 4 2 8 8 C 1.53201 * 109.31145 * 181.38606 * 7 5 4 9 9 N 1.46920 * 108.77575 * 305.36866 * 8 7 5 10 10 C 1.36938 * 120.62893 * 233.59043 * 9 8 7 11 11 H 1.07997 * 120.00427 * 27.69352 * 10 9 8 12 12 C 1.38818 * 119.99909 * 207.69990 * 10 9 8 13 13 N 1.31620 * 119.99684 * 17.34916 * 12 10 9 14 14 Si 1.86797 * 120.00298 * 197.35256 * 12 10 9 15 15 H 1.48499 * 109.46839 * 59.99628 * 14 12 10 16 16 H 1.48498 * 109.47385 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47100 * 299.99825 * 14 12 10 18 18 C 1.46925 * 118.74068 * 53.60438 * 9 8 7 19 19 C 1.53035 * 109.46003 * 204.99578 * 5 4 2 20 20 H 1.08997 * 109.50195 * 298.56334 * 19 5 4 21 21 O 1.42902 * 109.49811 * 58.66102 * 19 5 4 22 22 H 1.08997 * 109.47544 * 180.27420 * 1 2 3 23 23 H 1.09003 * 109.47048 * 300.27632 * 1 2 3 24 24 H 1.09003 * 109.47222 * 60.26912 * 1 2 3 25 25 H 0.97001 * 119.99942 * 359.97438 * 4 2 1 26 26 H 1.08999 * 109.50335 * 301.34254 * 7 5 4 27 27 H 1.08995 * 109.49754 * 61.43969 * 7 5 4 28 28 H 1.09008 * 109.58366 * 185.57829 * 8 7 5 29 29 H 1.09000 * 109.58418 * 65.15885 * 8 7 5 30 30 H 0.97007 * 119.99987 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.58557 * 186.60230 * 18 9 8 32 32 H 1.09002 * 109.69926 * 66.25057 * 18 9 8 33 33 H 0.96703 * 113.99848 * 180.02562 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0055 5 6 3.6458 -1.1673 0.0060 6 1 4.0091 -0.3283 -0.5875 7 6 4.1551 -1.0332 1.4429 8 6 5.6868 -0.9988 1.4364 9 7 6.1834 -2.1865 0.7284 10 6 7.0917 -3.0228 1.3208 11 1 7.1245 -3.1094 2.3968 12 6 7.9704 -3.7592 0.5382 13 7 8.1765 -3.4201 -0.7168 14 14 8.8603 -5.2316 1.2660 15 1 7.8654 -6.2327 1.7274 16 1 9.7339 -5.8426 0.2323 17 1 9.6886 -4.7901 2.4167 18 6 5.6873 -2.4598 -0.6273 19 6 4.1558 -2.4778 -0.5976 20 1 3.8136 -3.3157 0.0097 21 8 3.6547 -2.6167 -1.9287 22 1 -0.3634 -1.0276 0.0049 23 1 -0.3633 0.5181 0.8875 24 1 -0.3634 0.5097 -0.8924 25 1 1.6958 -2.0072 0.0098 26 1 3.7724 -0.1110 1.8801 27 1 3.8129 -1.8846 2.0311 28 1 6.0567 -1.0032 2.4618 29 1 6.0298 -0.0989 0.9259 30 1 8.7903 -3.9349 -1.2638 31 1 6.0578 -3.4281 -0.9636 32 1 6.0305 -1.6807 -1.3081 33 1 3.9384 -3.4272 -2.3732 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089977484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:55 Heat of formation + Delta-G solvation = -71.553706 kcal Electronic energy + Delta-G solvation = -16586.762287 eV Core-core repulsion = 13840.831274 eV Total energy + Delta-G solvation = -2745.931014 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.61989 -37.79911 -35.26884 -34.27415 -32.24974 -30.34979 -29.01458 -28.44150 -24.98163 -22.47852 -21.79602 -20.20813 -19.41722 -17.17009 -16.60839 -16.37434 -15.96907 -14.98439 -14.82364 -13.94688 -13.73942 -13.48890 -13.28546 -12.86803 -12.51897 -12.29188 -12.15231 -11.79776 -11.67095 -11.20518 -10.81887 -10.79573 -10.40355 -10.22525 -10.01567 -9.83170 -9.51087 -9.32416 -8.72024 -8.52521 -6.78808 -5.87571 -3.31041 2.88663 3.33177 3.39514 3.40280 3.52223 4.40753 4.59546 4.99805 5.18419 5.29679 5.39093 5.41339 5.48655 5.61857 5.78523 5.91990 6.01544 6.10024 6.25577 6.45586 6.49923 6.70768 6.88203 6.91390 7.11779 7.45469 7.70951 7.80986 8.09591 8.35495 8.49705 9.10705 9.73627 10.30026 11.20876 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.049212 B = 0.006980 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.831630 B = 4010.252319 C = 4249.492513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.506 3.494 3 O -0.555 6.555 4 N -0.716 5.716 5 C 0.159 3.841 6 H 0.086 0.914 7 C -0.139 4.139 8 C 0.145 3.855 9 N -0.589 5.589 10 C -0.257 4.257 11 H 0.068 0.932 12 C 0.003 3.997 13 N -0.902 5.902 14 Si 0.905 3.095 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.281 1.281 18 C 0.148 3.852 19 C 0.072 3.928 20 H 0.051 0.949 21 O -0.573 6.573 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.397 0.603 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.024 0.976 30 H 0.256 0.744 31 H 0.094 0.906 32 H 0.029 0.971 33 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.626 0.325 0.903 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.293 3.707 3 O -0.433 6.433 4 N -0.365 5.365 5 C 0.055 3.945 6 H 0.104 0.896 7 C -0.179 4.179 8 C 0.018 3.982 9 N -0.313 5.313 10 C -0.386 4.386 11 H 0.086 0.914 12 C -0.196 4.196 13 N -0.546 5.546 14 Si 0.734 3.266 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.207 1.207 18 C 0.021 3.979 19 C 0.011 3.989 20 H 0.069 0.931 21 O -0.378 6.378 22 H 0.091 0.909 23 H 0.108 0.892 24 H 0.109 0.891 25 H 0.230 0.770 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -12.335 1.579 0.920 12.470 hybrid contribution 0.529 -1.770 0.160 1.855 sum -11.806 -0.192 1.079 11.857 Atomic orbital electron populations 1.21833 0.92462 1.03819 1.04806 1.20724 0.90326 0.83853 0.75832 1.90705 1.70741 1.31468 1.50380 1.46236 1.07847 1.08249 1.74213 1.20982 0.78254 0.98403 0.96840 0.89550 1.22406 0.99246 1.01234 0.95022 1.20947 0.90140 0.90195 0.96944 1.44000 1.48406 1.24523 1.14371 1.19175 1.10006 1.17925 0.91516 0.91386 1.25079 0.97091 1.00843 0.96588 1.70026 1.37631 1.39391 1.07595 0.86337 0.79254 0.82814 0.78185 1.21006 1.21567 1.20747 1.21413 0.86716 1.02691 0.87101 1.22972 0.98098 0.95477 0.82328 0.93077 1.86415 1.75720 1.46831 1.28812 0.90857 0.89160 0.89112 0.76966 0.91854 0.92060 0.92108 0.95835 0.93419 0.88827 0.95255 0.77776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.39 36.01 0.37 -1.29 16 2 C 0.51 7.76 7.90 -10.99 -0.09 7.67 16 3 O -0.55 -11.05 16.76 5.56 0.09 -10.95 16 4 N -0.72 -10.79 4.92 -53.77 -0.26 -11.05 16 5 C 0.16 2.94 2.11 -67.89 -0.14 2.79 16 6 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 7 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 8 C 0.14 3.09 6.52 -3.71 -0.02 3.06 16 9 N -0.59 -14.51 2.99 -172.31 -0.52 -15.03 16 10 C -0.26 -6.87 9.59 -15.06 -0.14 -7.02 16 11 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 12 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 13 N -0.90 -25.56 11.19 55.49 0.62 -24.94 16 14 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.15 3.44 4.94 -3.71 -0.02 3.42 16 19 C 0.07 1.35 3.14 -26.61 -0.08 1.27 16 20 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 21 O -0.57 -9.83 13.16 -35.23 -0.46 -10.29 16 22 H 0.07 0.54 7.91 -51.93 -0.41 0.13 16 23 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.40 4.90 8.44 -40.82 -0.34 4.55 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.25 7.93 -51.92 -0.41 0.84 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 31 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.38 5.13 9.08 45.56 0.41 5.54 16 LS Contribution 275.26 15.07 4.15 4.15 Total: -1.00 -32.06 275.26 -5.74 -37.80 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -3.97 Total: 7.08 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.36 Total: 7.20 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.16 Total: -51.02 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.37 Total: -21.25 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.06 -5.74 -37.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089977484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.755 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds