Wall clock time and date at job start Sun Mar 29 2020 21:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21272 * 119.99937 * 2 1 4 4 N 1.34774 * 119.99697 * 179.73172 * 2 1 3 5 5 C 1.46500 * 119.99963 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.45524 * 324.96853 * 5 4 2 7 7 C 1.53036 * 109.46148 * 84.92313 * 5 4 2 8 8 C 1.53201 * 109.31145 * 181.38606 * 7 5 4 9 9 N 1.46920 * 108.77575 * 305.36866 * 8 7 5 10 10 C 1.36938 * 120.62893 * 233.59043 * 9 8 7 11 11 H 1.07997 * 120.00427 * 27.69352 * 10 9 8 12 12 C 1.38818 * 119.99909 * 207.69990 * 10 9 8 13 13 N 1.31620 * 119.99684 * 17.34916 * 12 10 9 14 14 Si 1.86797 * 120.00298 * 197.35256 * 12 10 9 15 15 H 1.48499 * 109.46839 * 59.99628 * 14 12 10 16 16 H 1.48498 * 109.47385 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47100 * 299.99825 * 14 12 10 18 18 C 1.46925 * 118.74068 * 53.60438 * 9 8 7 19 19 C 1.53035 * 109.46003 * 204.99578 * 5 4 2 20 20 H 1.08997 * 109.50195 * 298.56334 * 19 5 4 21 21 O 1.42902 * 109.49811 * 58.66102 * 19 5 4 22 22 H 1.08997 * 109.47544 * 180.27420 * 1 2 3 23 23 H 1.09003 * 109.47048 * 300.27632 * 1 2 3 24 24 H 1.09003 * 109.47222 * 60.26912 * 1 2 3 25 25 H 0.97001 * 119.99942 * 359.97438 * 4 2 1 26 26 H 1.08999 * 109.50335 * 301.34254 * 7 5 4 27 27 H 1.08995 * 109.49754 * 61.43969 * 7 5 4 28 28 H 1.09008 * 109.58366 * 185.57829 * 8 7 5 29 29 H 1.09000 * 109.58418 * 65.15885 * 8 7 5 30 30 H 0.97007 * 119.99987 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.58557 * 186.60230 * 18 9 8 32 32 H 1.09002 * 109.69926 * 66.25057 * 18 9 8 33 33 H 0.96703 * 113.99848 * 180.02562 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0055 5 6 3.6458 -1.1673 0.0060 6 1 4.0091 -0.3283 -0.5875 7 6 4.1551 -1.0332 1.4429 8 6 5.6868 -0.9988 1.4364 9 7 6.1834 -2.1865 0.7284 10 6 7.0917 -3.0228 1.3208 11 1 7.1245 -3.1094 2.3968 12 6 7.9704 -3.7592 0.5382 13 7 8.1765 -3.4201 -0.7168 14 14 8.8603 -5.2316 1.2660 15 1 7.8654 -6.2327 1.7274 16 1 9.7339 -5.8426 0.2323 17 1 9.6886 -4.7901 2.4167 18 6 5.6873 -2.4598 -0.6273 19 6 4.1558 -2.4778 -0.5976 20 1 3.8136 -3.3157 0.0097 21 8 3.6547 -2.6167 -1.9287 22 1 -0.3634 -1.0276 0.0049 23 1 -0.3633 0.5181 0.8875 24 1 -0.3634 0.5097 -0.8924 25 1 1.6958 -2.0072 0.0098 26 1 3.7724 -0.1110 1.8801 27 1 3.8129 -1.8846 2.0311 28 1 6.0567 -1.0032 2.4618 29 1 6.0298 -0.0989 0.9259 30 1 8.7903 -3.9349 -1.2638 31 1 6.0578 -3.4281 -0.9636 32 1 6.0305 -1.6807 -1.3081 33 1 3.9384 -3.4272 -2.3732 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089977484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:55 Heat of formation + Delta-G solvation = -97.532630 kcal Electronic energy + Delta-G solvation = -16587.888818 eV Core-core repulsion = 13840.831274 eV Total energy + Delta-G solvation = -2747.057544 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.99038 -39.33568 -36.90265 -35.78618 -34.00069 -31.80996 -30.64883 -29.79638 -26.82285 -24.16641 -23.47584 -21.51808 -21.06981 -18.95552 -18.12618 -17.68656 -17.46577 -16.68436 -16.16300 -15.64823 -15.46903 -15.07976 -14.74170 -14.42554 -13.88276 -13.65590 -13.43371 -13.25781 -13.01497 -12.94252 -12.61725 -12.56109 -12.10075 -12.04508 -11.88885 -11.41099 -11.02913 -10.81275 -10.60316 -10.03669 -8.78239 -7.91681 -5.39211 1.49561 1.50624 1.58292 1.70167 2.30774 2.49412 3.10647 3.26297 3.62241 3.87030 4.02704 4.05887 4.29603 4.40545 4.44323 4.53394 4.69247 4.71141 4.87510 4.92784 5.02396 5.11295 5.14717 5.31331 5.51686 5.54967 5.62499 6.31904 6.65343 6.81603 7.08718 7.33428 7.76098 8.29464 9.15031 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.049212 B = 0.006980 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.831630 B = 4010.252319 C = 4249.492513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.499 3.501 3 O -0.607 6.607 4 N -0.705 5.705 5 C 0.165 3.835 6 H 0.050 0.950 7 C -0.122 4.122 8 C 0.141 3.859 9 N -0.604 5.604 10 C -0.269 4.269 11 H 0.073 0.927 12 C -0.048 4.048 13 N -0.936 5.936 14 Si 0.972 3.028 15 H -0.273 1.273 16 H -0.295 1.295 17 H -0.277 1.277 18 C 0.156 3.844 19 C 0.093 3.907 20 H 0.068 0.932 21 O -0.574 6.574 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.100 0.900 25 H 0.414 0.586 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.006 0.994 30 H 0.252 0.748 31 H 0.072 0.928 32 H -0.007 1.007 33 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.683 -0.862 1.869 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.288 3.712 3 O -0.489 6.489 4 N -0.356 5.356 5 C 0.059 3.941 6 H 0.068 0.932 7 C -0.162 4.162 8 C 0.015 3.985 9 N -0.329 5.329 10 C -0.399 4.399 11 H 0.091 0.909 12 C -0.243 4.243 13 N -0.582 5.582 14 Si 0.799 3.201 15 H -0.199 1.199 16 H -0.221 1.221 17 H -0.203 1.203 18 C 0.029 3.971 19 C 0.032 3.968 20 H 0.086 0.914 21 O -0.380 6.380 22 H 0.124 0.876 23 H 0.123 0.877 24 H 0.119 0.881 25 H 0.251 0.749 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.024 0.976 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.011 0.989 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -14.442 0.363 1.892 14.570 hybrid contribution 1.182 -1.340 -0.176 1.795 sum -13.260 -0.977 1.717 13.407 Atomic orbital electron populations 1.21847 0.87483 1.06377 1.05957 1.21786 0.92591 0.82718 0.74106 1.90688 1.72301 1.33291 1.52647 1.46072 1.06191 1.09454 1.73888 1.20635 0.80642 0.96651 0.96149 0.93209 1.22190 0.96601 1.02132 0.95285 1.21050 0.92386 0.88452 0.96659 1.44250 1.48565 1.25364 1.14724 1.19540 1.10250 1.18096 0.91976 0.90901 1.25858 0.98129 1.03365 0.96965 1.70192 1.38537 1.40489 1.08934 0.85279 0.78068 0.79520 0.77187 1.19887 1.22107 1.20268 1.21233 0.89934 1.00009 0.85963 1.22539 0.94571 0.96229 0.83465 0.91423 1.86391 1.75234 1.48259 1.28155 0.87645 0.87664 0.88106 0.74896 0.91257 0.90513 0.91404 0.97581 0.93871 0.90996 0.98928 0.75846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.39 71.24 0.74 -1.76 16 2 C 0.50 14.30 7.90 87.66 0.69 15.00 16 3 O -0.61 -23.99 16.76 -3.01 -0.05 -24.04 16 4 N -0.71 -19.67 4.92 -442.43 -2.18 -21.84 16 5 C 0.16 5.97 2.11 45.02 0.10 6.06 16 6 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 7 C -0.12 -4.36 5.65 30.67 0.17 -4.19 16 8 C 0.14 6.06 6.52 86.37 0.56 6.62 16 9 N -0.60 -30.14 2.99 -699.08 -2.09 -32.23 16 10 C -0.27 -14.41 9.59 84.03 0.81 -13.60 16 11 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 12 C -0.05 -2.58 4.91 84.86 0.42 -2.16 16 13 N -0.94 -54.21 11.19 21.65 0.24 -53.97 16 14 Si 0.97 43.25 29.59 68.60 2.03 45.28 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 18 C 0.16 7.40 4.94 86.36 0.43 7.83 16 19 C 0.09 3.41 3.14 30.67 0.10 3.51 16 20 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 21 O -0.57 -18.92 13.16 -148.98 -1.96 -20.88 16 22 H 0.10 1.01 7.91 -2.39 -0.02 1.00 16 23 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.41 8.74 8.44 -92.71 -0.78 7.95 16 26 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.07 2.77 7.93 -2.38 -0.02 2.75 16 29 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16 30 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 31 H 0.07 3.72 6.04 -2.39 -0.01 3.70 16 32 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.39 10.14 9.08 -74.06 -0.67 9.47 16 Total: -1.00 -70.74 275.26 -0.33 -71.07 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.33 Total: 19.31 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 4.01 Total: 17.30 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -4.03 Total: -108.04 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -2.01 Total: -44.92 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -70.74 -0.33 -71.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089977484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.463 kcal (2) G-P(sol) polarization free energy of solvation -70.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds