Wall clock time and date at job start Sun Mar 29 2020 21:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00337 * 2 1 4 4 H 1.48494 * 109.47230 * 269.99769 * 3 2 1 5 5 H 1.48508 * 109.46914 * 29.99499 * 3 2 1 6 6 H 1.48498 * 109.47250 * 149.99641 * 3 2 1 7 7 C 1.38815 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99960 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00093 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47469 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47279 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99659 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00455 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99989 * 179.97438 * 13 12 11 16 16 H 1.09004 * 110.32925 * 302.75230 * 15 13 12 17 17 C 1.54478 * 110.37139 * 64.99736 * 15 13 12 18 18 C 1.54510 * 104.06500 * 142.81210 * 17 15 13 19 19 C 1.54477 * 104.18108 * 359.93120 * 18 17 15 20 20 O 1.44415 * 110.37723 * 180.37967 * 15 13 12 21 21 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 22 22 H 0.96997 * 120.00123 * 359.97438 * 9 7 2 23 23 H 1.09005 * 109.47059 * 60.00672 * 10 9 7 24 24 H 1.08991 * 109.47378 * 300.00659 * 10 9 7 25 25 H 1.08998 * 109.46868 * 59.99999 * 11 10 9 26 26 H 1.09006 * 109.46794 * 300.00776 * 11 10 9 27 27 H 0.96993 * 120.00475 * 359.97438 * 12 11 10 28 28 H 1.09000 * 110.51268 * 24.16636 * 17 15 13 29 29 H 1.08999 * 110.51553 * 261.45556 * 17 15 13 30 30 H 1.09002 * 110.51305 * 118.64650 * 18 17 15 31 31 H 1.08994 * 110.51141 * 241.21979 * 18 17 15 32 32 H 1.09006 * 110.37498 * 94.92285 * 19 18 17 33 33 H 1.09000 * 110.37254 * 217.25804 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8198 -0.0001 12 7 1.7963 -6.0885 0.0005 13 6 1.1223 -7.2556 -0.0004 14 8 -0.0905 -7.2557 -0.0013 15 6 1.8757 -8.5608 -0.0004 16 1 2.5446 -8.6119 -0.8595 17 6 2.6737 -8.7210 1.3126 18 6 2.5641 -10.2276 1.6372 19 6 1.7116 -10.8021 0.4841 20 8 0.9547 -9.6731 -0.0104 21 1 -0.4850 0.8400 -0.0004 22 1 0.3555 -2.3881 0.0005 23 1 2.6846 -3.7146 0.8906 24 1 2.6847 -3.7145 -0.8893 25 1 0.4375 -4.7618 -0.8903 26 1 0.4367 -4.7621 0.8896 27 1 2.7662 -6.0885 0.0008 28 1 2.2248 -8.1254 2.1075 29 1 3.7155 -8.4373 1.1635 30 1 3.5517 -10.6887 1.6485 31 1 2.0631 -10.3768 2.5936 32 1 2.3543 -11.2005 -0.3010 33 1 1.0419 -11.5770 0.8571 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123145242.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:07 Heat of formation + Delta-G solvation = -73.376456 kcal Electronic energy + Delta-G solvation = -15440.677798 eV Core-core repulsion = 12694.667744 eV Total energy + Delta-G solvation = -2746.010054 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29786 -38.43874 -35.65544 -33.89783 -32.39491 -31.32327 -29.97577 -27.50066 -24.33553 -23.16887 -21.80154 -21.48267 -20.30512 -17.70607 -17.20879 -16.70096 -16.05258 -15.35147 -15.01473 -14.77522 -14.49452 -14.07719 -13.64375 -13.35951 -13.17811 -12.85715 -12.12393 -12.00336 -11.66388 -11.41812 -11.11927 -11.07165 -10.83365 -10.81162 -10.22925 -10.12164 -9.82221 -9.55794 -9.00083 -8.84347 -7.00393 -5.80128 -3.11099 2.65403 2.91098 3.41988 3.46562 3.48859 3.85512 4.22805 4.45294 4.55606 4.59812 4.77236 4.84662 5.05487 5.25501 5.36092 5.46737 5.49511 5.51796 5.61391 5.69531 5.77099 5.95036 6.13769 6.42466 6.46687 6.69043 6.73886 7.58200 7.65014 8.30066 8.37458 9.48612 10.03338 10.38042 11.42446 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.075477 B = 0.004053 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.883733 B = 6907.448003 C = 7147.889420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.111 3.889 12 N -0.720 5.720 13 C 0.514 3.486 14 O -0.521 6.521 15 C 0.058 3.942 16 H 0.095 0.905 17 C -0.146 4.146 18 C -0.154 4.154 19 C 0.041 3.959 20 O -0.346 6.346 21 H 0.257 0.743 22 H 0.386 0.614 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.399 0.601 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.514 -20.236 1.858 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.012 4.012 12 N -0.374 5.374 13 C 0.298 3.702 14 O -0.395 6.395 15 C -0.004 4.004 16 H 0.113 0.887 17 C -0.184 4.184 18 C -0.191 4.191 19 C -0.036 4.036 20 O -0.263 6.263 21 H 0.067 0.933 22 H 0.220 0.780 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.233 0.767 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.502 -20.098 1.798 21.528 hybrid contribution 0.878 0.924 0.046 1.276 sum 8.380 -19.174 1.844 21.006 Atomic orbital electron populations 1.69667 1.05168 1.25878 1.57108 1.24785 0.95560 0.97833 1.02621 0.86145 0.78599 0.83583 0.77554 1.21613 1.21678 1.20698 1.19190 0.91033 0.83852 1.43546 0.91021 1.42192 1.06035 0.99559 1.89709 1.20751 0.93463 0.85657 0.98429 1.21600 0.95469 0.81405 1.02715 1.45822 1.10382 1.05704 1.75448 1.20132 0.88225 0.84736 0.77094 1.90744 1.13704 1.87249 1.47848 1.22869 0.90996 0.87278 0.99216 0.88742 1.22938 1.01038 0.97448 0.96989 1.22939 1.01126 0.94989 1.00091 1.23535 0.94954 0.90044 0.95069 1.89319 1.33445 1.17339 1.86232 0.93331 0.77975 0.95774 0.95764 0.91163 0.91200 0.76679 0.89884 0.89394 0.90138 0.90316 0.91947 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.61 5.60 -59.91 -0.34 -18.94 16 10 C 0.15 2.83 6.37 -4.04 -0.03 2.80 16 11 C 0.11 1.94 5.79 -4.04 -0.02 1.91 16 12 N -0.72 -9.85 5.54 -60.29 -0.33 -10.18 16 13 C 0.51 7.80 7.08 -10.98 -0.08 7.72 16 14 O -0.52 -10.55 16.55 -13.66 -0.23 -10.77 16 15 C 0.06 0.65 3.71 -27.11 -0.10 0.55 16 16 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 17 C -0.15 -1.20 6.61 -25.16 -0.17 -1.37 16 18 C -0.15 -1.06 7.08 -25.16 -0.18 -1.24 16 19 C 0.04 0.34 7.65 37.93 0.29 0.63 16 20 O -0.35 -4.60 10.91 -54.45 -0.59 -5.19 16 21 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.39 10.46 7.67 -40.82 -0.31 10.14 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.40 4.08 8.47 -40.82 -0.35 3.74 16 28 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 283.89 15.07 4.28 4.28 Total: -1.00 -34.75 283.89 -6.88 -41.63 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.84 Total: 5.99 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -0.53 Total: 3.57 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.05 Total: -56.74 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.82 Total: -15.97 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.75 -6.88 -41.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123145242.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.746 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds