Wall clock time and date at job start Sun Mar 29 2020 21:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00337 * 2 1 4 4 H 1.48494 * 109.47230 * 269.99769 * 3 2 1 5 5 H 1.48508 * 109.46914 * 29.99499 * 3 2 1 6 6 H 1.48498 * 109.47250 * 149.99641 * 3 2 1 7 7 C 1.38815 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99960 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00093 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47469 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47279 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99659 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00455 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99989 * 179.97438 * 13 12 11 16 16 H 1.09004 * 110.32925 * 302.75230 * 15 13 12 17 17 C 1.54478 * 110.37139 * 64.99736 * 15 13 12 18 18 C 1.54510 * 104.06500 * 142.81210 * 17 15 13 19 19 C 1.54477 * 104.18108 * 359.93120 * 18 17 15 20 20 O 1.44415 * 110.37723 * 180.37967 * 15 13 12 21 21 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 22 22 H 0.96997 * 120.00123 * 359.97438 * 9 7 2 23 23 H 1.09005 * 109.47059 * 60.00672 * 10 9 7 24 24 H 1.08991 * 109.47378 * 300.00659 * 10 9 7 25 25 H 1.08998 * 109.46868 * 59.99999 * 11 10 9 26 26 H 1.09006 * 109.46794 * 300.00776 * 11 10 9 27 27 H 0.96993 * 120.00475 * 359.97438 * 12 11 10 28 28 H 1.09000 * 110.51268 * 24.16636 * 17 15 13 29 29 H 1.08999 * 110.51553 * 261.45556 * 17 15 13 30 30 H 1.09002 * 110.51305 * 118.64650 * 18 17 15 31 31 H 1.08994 * 110.51141 * 241.21979 * 18 17 15 32 32 H 1.09006 * 110.37498 * 94.92285 * 19 18 17 33 33 H 1.09000 * 110.37254 * 217.25804 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8198 -0.0001 12 7 1.7963 -6.0885 0.0005 13 6 1.1223 -7.2556 -0.0004 14 8 -0.0905 -7.2557 -0.0013 15 6 1.8757 -8.5608 -0.0004 16 1 2.5446 -8.6119 -0.8595 17 6 2.6737 -8.7210 1.3126 18 6 2.5641 -10.2276 1.6372 19 6 1.7116 -10.8021 0.4841 20 8 0.9547 -9.6731 -0.0104 21 1 -0.4850 0.8400 -0.0004 22 1 0.3555 -2.3881 0.0005 23 1 2.6846 -3.7146 0.8906 24 1 2.6847 -3.7145 -0.8893 25 1 0.4375 -4.7618 -0.8903 26 1 0.4367 -4.7621 0.8896 27 1 2.7662 -6.0885 0.0008 28 1 2.2248 -8.1254 2.1075 29 1 3.7155 -8.4373 1.1635 30 1 3.5517 -10.6887 1.6485 31 1 2.0631 -10.3768 2.5936 32 1 2.3543 -11.2005 -0.3010 33 1 1.0419 -11.5770 0.8571 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123145242.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:07 Heat of formation + Delta-G solvation = -100.278461 kcal Electronic energy + Delta-G solvation = -15441.844357 eV Core-core repulsion = 12694.667744 eV Total energy + Delta-G solvation = -2747.176613 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.32001 -39.47009 -37.30231 -35.56418 -33.42138 -32.89046 -31.03041 -29.02589 -25.83251 -24.50713 -23.06682 -22.45511 -21.44831 -19.36450 -18.58594 -17.58668 -17.18930 -16.59535 -16.48915 -16.03407 -15.85818 -15.14192 -15.10735 -14.83504 -14.62627 -14.28130 -13.15685 -13.04521 -12.79388 -12.69939 -12.66027 -12.51900 -12.24695 -12.08235 -11.86243 -11.68122 -11.07557 -10.99187 -10.69814 -10.21976 -9.07120 -7.96773 -5.28563 1.48086 1.48970 1.51611 1.59966 1.81569 2.56957 3.06886 3.37706 3.46011 3.67999 3.93280 3.98993 4.08650 4.16904 4.18414 4.24839 4.38683 4.56931 4.69669 4.82561 4.94452 5.00104 5.03315 5.12253 5.15150 5.31632 5.48839 5.74912 6.23760 6.48454 7.15814 7.29923 8.01666 8.24445 9.27056 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.075477 B = 0.004053 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.883733 B = 6907.448003 C = 7147.889420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.249 4.249 8 H 0.085 0.915 9 N -0.749 5.749 10 C 0.150 3.850 11 C 0.127 3.873 12 N -0.702 5.702 13 C 0.509 3.491 14 O -0.581 6.581 15 C 0.061 3.939 16 H 0.128 0.872 17 C -0.143 4.143 18 C -0.148 4.148 19 C 0.033 3.967 20 O -0.391 6.391 21 H 0.252 0.748 22 H 0.373 0.627 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.420 0.580 28 H 0.064 0.936 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.528 -21.278 1.980 24.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.809 3.191 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.380 4.380 8 H 0.103 0.897 9 N -0.392 5.392 10 C 0.023 3.977 11 C 0.002 3.998 12 N -0.356 5.356 13 C 0.296 3.704 14 O -0.460 6.460 15 C 0.000 4.000 16 H 0.145 0.855 17 C -0.181 4.181 18 C -0.186 4.186 19 C -0.043 4.043 20 O -0.310 6.310 21 H 0.061 0.939 22 H 0.205 0.795 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.258 0.742 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.613 -21.185 1.925 23.773 hybrid contribution -0.041 1.136 0.005 1.137 sum 10.572 -20.049 1.930 22.748 Atomic orbital electron populations 1.69842 1.06925 1.26311 1.59150 1.25692 0.96418 1.01548 1.03313 0.85043 0.77734 0.78870 0.77490 1.21285 1.22397 1.18863 1.19672 0.91801 0.84794 1.41746 0.89697 1.42449 1.05772 1.01181 1.89822 1.20850 0.93457 0.83815 0.99539 1.21170 0.94948 0.82621 1.01037 1.45572 1.11269 1.04182 1.74627 1.21046 0.87788 0.86263 0.75322 1.90714 1.16533 1.88147 1.50633 1.23028 0.90443 0.84351 1.02170 0.85465 1.23004 1.02197 0.98233 0.94638 1.22955 1.02401 0.94009 0.99206 1.23814 0.95333 0.88885 0.96268 1.89281 1.35729 1.19089 1.86891 0.93912 0.79546 0.94093 0.94157 0.93019 0.93002 0.74192 0.91669 0.85891 0.87098 0.90749 0.89735 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 3 Si 0.98 45.58 29.55 68.60 2.03 47.60 16 4 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.25 -13.71 9.99 84.04 0.84 -12.87 16 8 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.75 -38.19 5.60 -343.46 -1.92 -40.11 16 10 C 0.15 5.65 6.37 86.38 0.55 6.20 16 11 C 0.13 4.42 5.79 86.38 0.50 4.92 16 12 N -0.70 -18.31 5.54 -463.06 -2.56 -20.88 16 13 C 0.51 15.23 7.08 87.66 0.62 15.85 16 14 O -0.58 -24.36 16.55 15.34 0.25 -24.10 16 15 C 0.06 1.24 3.71 30.35 0.11 1.35 16 16 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16 17 C -0.14 -1.92 6.61 31.61 0.21 -1.71 16 18 C -0.15 -1.59 7.08 31.61 0.22 -1.36 16 19 C 0.03 0.47 7.65 72.48 0.55 1.03 16 20 O -0.39 -10.07 10.91 -130.60 -1.43 -11.49 16 21 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 22 H 0.37 20.72 7.67 -92.71 -0.71 20.01 16 23 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.42 7.38 8.47 -92.71 -0.79 6.60 16 28 H 0.06 1.12 7.86 -2.39 -0.02 1.10 16 29 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -77.10 283.89 0.35 -76.76 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -0.38 Total: 22.80 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 4.08 Total: 9.42 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -4.21 Total: -120.99 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.17 Total: -35.59 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -77.10 0.35 -76.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123145242.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.522 kcal (2) G-P(sol) polarization free energy of solvation -77.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds