Wall clock time and date at job start Sun Mar 29 2020 22:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35463 * 116.99951 * 2 1 4 4 N 1.32348 * 119.13591 * 359.97438 * 3 2 1 5 5 C 1.32607 * 120.93485 * 180.02562 * 4 3 2 6 6 Cl 1.73596 * 120.38040 * 180.02562 * 5 4 3 7 7 C 1.38376 * 119.23520 * 359.74939 * 5 4 3 8 8 C 1.39577 * 118.42835 * 0.48741 * 7 5 4 9 9 N 1.38525 * 120.49575 * 179.78170 * 8 7 5 10 10 C 1.36945 * 120.00025 * 359.72775 * 9 8 7 11 11 H 1.08005 * 119.99882 * 359.97438 * 10 9 8 12 12 C 1.38842 * 120.00119 * 179.72672 * 10 9 8 13 13 N 1.31537 * 119.99954 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00208 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47040 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47048 * 119.99498 * 14 12 10 17 17 H 1.48496 * 109.47574 * 239.99748 * 14 12 10 18 18 N 1.32218 * 119.14137 * 180.02562 * 3 2 1 19 19 H 1.08997 * 109.47629 * 59.99750 * 1 2 3 20 20 H 1.08995 * 109.47004 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46626 * 299.99215 * 1 2 3 22 22 H 1.07994 * 120.78769 * 180.27428 * 7 5 4 23 23 H 0.97005 * 120.00155 * 179.72559 * 9 8 7 24 24 H 0.97004 * 120.00318 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3065 2.3059 -0.0005 5 6 1.8711 3.5058 -0.0010 6 17 0.8899 4.9378 -0.0010 7 6 3.2514 3.6032 0.0042 8 6 4.0007 2.4255 -0.0005 9 7 5.3851 2.4731 -0.0001 10 6 6.0287 3.6819 -0.0006 11 1 5.4568 4.5982 -0.0018 12 6 7.4163 3.7296 0.0056 13 7 8.1127 2.6138 0.0124 14 14 8.2942 5.3785 0.0041 15 1 7.2910 6.4734 -0.0035 16 1 9.1391 5.4905 1.2202 17 1 9.1503 5.4825 -1.2047 18 7 3.3652 1.2564 -0.0005 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 3.7376 4.5675 0.0084 23 1 5.8987 1.6502 0.0006 24 1 9.0821 2.6471 0.0171 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155531479.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:01 Heat of formation + Delta-G solvation = -9.311709 kcal Electronic energy + Delta-G solvation = -13326.988101 eV Core-core repulsion = 10687.373168 eV Total energy + Delta-G solvation = -2639.614934 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.80317 -39.39627 -37.91375 -37.16003 -34.49371 -33.24741 -30.97599 -28.40157 -27.04082 -24.84855 -23.59189 -20.36755 -19.75538 -18.41597 -17.60262 -17.25510 -16.59039 -16.15751 -15.58151 -15.20748 -15.19771 -15.10499 -13.80415 -13.58823 -13.10580 -12.81698 -12.76687 -12.63609 -12.23737 -12.04223 -11.64737 -11.57854 -11.15231 -10.24361 -10.07365 -9.33764 -8.67062 -6.01578 0.23639 0.45820 0.69136 1.44824 1.50868 1.60169 1.75309 2.23066 2.73388 2.95128 3.20998 3.74877 4.13741 4.40464 4.49474 4.49772 4.65724 4.78739 5.10185 5.21559 5.63366 5.90504 6.29278 6.59771 7.06782 7.14775 7.60126 8.49573 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.030650 B = 0.007852 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.318956 B = 3565.042033 C = 4463.212326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.310 6.310 3 C 0.543 3.457 4 N -0.646 5.646 5 C 0.269 3.731 6 Cl -0.014 7.014 7 C -0.315 4.315 8 C 0.393 3.607 9 N -0.508 5.508 10 C -0.329 4.329 11 H 0.123 0.877 12 C -0.012 4.012 13 N -0.907 5.907 14 Si 1.011 2.989 15 H -0.250 1.250 16 H -0.275 1.275 17 H -0.274 1.274 18 N -0.634 5.634 19 H 0.060 0.940 20 H 0.133 0.867 21 H 0.060 0.940 22 H 0.152 0.848 23 H 0.400 0.600 24 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.259 2.947 -0.019 9.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.212 6.212 3 C 0.237 3.763 4 N -0.389 5.389 5 C 0.105 3.895 6 Cl 0.014 6.986 7 C -0.348 4.348 8 C 0.143 3.857 9 N -0.114 5.114 10 C -0.459 4.459 11 H 0.140 0.860 12 C -0.215 4.215 13 N -0.543 5.543 14 Si 0.832 3.168 15 H -0.173 1.173 16 H -0.200 1.200 17 H -0.200 1.200 18 N -0.378 5.378 19 H 0.078 0.922 20 H 0.150 0.850 21 H 0.078 0.922 22 H 0.170 0.830 23 H 0.235 0.765 24 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.283 2.069 -0.018 9.511 hybrid contribution 0.918 0.923 0.005 1.302 sum -8.366 2.992 -0.013 8.885 Atomic orbital electron populations 1.23168 0.74107 1.04980 1.02713 1.86021 1.25127 1.22387 1.87636 1.19919 0.84678 0.84310 0.87421 1.67209 1.40541 0.97413 1.33727 1.21107 0.87964 0.87852 0.92597 1.98354 1.71334 1.32703 1.96205 1.21401 0.92225 0.99893 1.21272 1.17978 0.85883 0.87528 0.94272 1.40933 1.00333 1.09989 1.60113 1.20320 0.90457 0.85447 1.49652 0.85995 1.26470 0.96804 1.03331 0.94939 1.69792 1.08939 1.29378 1.46145 0.84593 0.78124 0.75984 0.78091 1.17262 1.19988 1.19969 1.66747 1.08688 1.28951 1.33365 0.92157 0.84950 0.92172 0.83039 0.76467 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.16 10.36 113.37 1.17 2.33 14 2 O -0.31 -11.61 10.56 -87.61 -0.92 -12.53 14 3 C 0.54 23.51 8.49 180.59 1.53 25.05 14 4 N -0.65 -26.08 9.21 -304.49 -2.81 -28.89 14 5 C 0.27 10.57 7.33 84.61 0.62 11.19 14 6 Cl -0.01 -0.45 29.15 -2.72 -0.08 -0.53 14 7 C -0.32 -13.44 9.19 22.63 0.21 -13.23 14 8 C 0.39 18.77 7.67 133.13 1.02 19.79 14 9 N -0.51 -25.38 5.43 -188.73 -1.02 -26.41 14 10 C -0.33 -15.92 9.56 84.04 0.80 -15.12 14 11 H 0.12 5.48 5.73 -2.91 -0.02 5.46 14 12 C -0.01 -0.57 5.50 84.88 0.47 -0.10 14 13 N -0.91 -46.17 13.05 21.65 0.28 -45.89 14 14 Si 1.01 36.88 29.55 68.60 2.03 38.91 14 15 H -0.25 -8.48 7.11 99.48 0.71 -7.77 14 16 H -0.27 -9.90 7.11 99.48 0.71 -9.19 14 17 H -0.27 -9.89 7.11 99.48 0.71 -9.18 14 18 N -0.63 -30.49 10.50 -311.08 -3.27 -33.76 14 19 H 0.06 1.52 8.09 -2.39 -0.02 1.50 14 20 H 0.13 2.31 8.14 -2.39 -0.02 2.29 14 21 H 0.06 1.52 8.09 -2.39 -0.02 1.50 14 22 H 0.15 6.07 6.06 -2.91 -0.02 6.06 14 23 H 0.40 20.99 8.02 -92.70 -0.74 20.25 14 24 H 0.29 13.49 8.31 -92.71 -0.77 12.72 14 Total: -1.00 -56.12 239.30 0.55 -55.57 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.51 Total: 23.62 kcal Atomic # 6 Polarization: 24.08 SS G_CDS: 5.83 Total: 29.90 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -6.81 Total: -134.94 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.92 Total: -12.53 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -56.12 0.55 -55.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531479.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.259 kcal (2) G-P(sol) polarization free energy of solvation -56.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds