Wall clock time and date at job start Sun Mar 29 2020 21:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00346 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.01302 * 33.60255 * 11 10 9 13 13 C 1.54267 * 110.03157 * 272.16632 * 11 10 9 14 14 C 1.54887 * 104.19229 * 217.10703 * 13 11 10 15 15 C 1.54882 * 102.75306 * 37.94008 * 14 13 11 16 16 H 1.08999 * 110.48721 * 80.73257 * 15 14 13 17 17 C 1.52999 * 110.48576 * 203.38232 * 15 14 13 18 18 N 1.46499 * 109.47028 * 289.76929 * 17 15 14 19 19 O 1.21803 * 119.99699 * 45.00798 * 18 17 15 20 20 O 1.21793 * 120.00648 * 225.00093 * 18 17 15 21 21 C 1.53870 * 110.03238 * 154.99843 * 11 10 9 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 24 24 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 25 25 H 1.00899 * 110.99658 * 56.03755 * 10 9 7 26 26 H 1.09004 * 110.48603 * 335.78002 * 13 11 10 27 27 H 1.09000 * 110.48382 * 98.42350 * 13 11 10 28 28 H 1.09003 * 110.75389 * 279.61999 * 14 13 11 29 29 H 1.09001 * 110.75679 * 156.25975 * 14 13 11 30 30 H 1.08993 * 109.47634 * 49.77618 * 17 15 14 31 31 H 1.09002 * 109.46891 * 169.77826 * 17 15 14 32 32 H 1.09003 * 110.02994 * 238.57335 * 21 11 10 33 33 H 1.09006 * 110.03208 * 359.94777 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5055 -4.9071 0.0011 12 1 0.5776 -4.8286 -0.5654 13 6 1.2060 -5.3451 1.4497 14 6 1.4053 -6.8810 1.4309 15 6 2.6219 -7.0564 0.4887 16 1 3.5510 -6.8656 1.0258 17 6 2.6312 -8.4609 -0.1180 18 7 2.9560 -9.4400 0.9222 19 8 2.4193 -9.3701 2.0133 20 8 3.7627 -10.3241 0.6960 21 6 2.4058 -5.9951 -0.6098 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6242 -2.5567 0.8904 24 1 0.6248 -2.5571 -0.8896 25 1 2.8407 -3.5485 0.7818 26 1 1.9064 -4.8780 2.1421 27 1 0.1793 -5.0968 1.7187 28 1 0.5259 -7.3796 1.0233 29 1 1.6333 -7.2532 2.4297 30 1 1.6484 -8.6840 -0.5329 31 1 3.3793 -8.5099 -0.9093 32 1 1.9145 -6.4453 -1.4724 33 1 3.3620 -5.5647 -0.9076 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168960011.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:04 Heat of formation + Delta-G solvation = -31.007827 kcal Electronic energy + Delta-G solvation = -15768.950726 eV Core-core repulsion = 13024.777913 eV Total energy + Delta-G solvation = -2744.172812 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.36893 -38.83226 -36.58848 -34.93792 -32.87864 -31.15140 -28.64412 -27.16679 -24.89442 -23.35770 -22.05852 -20.89757 -19.92493 -18.86838 -18.68732 -17.59116 -16.94343 -15.62395 -15.09300 -14.35950 -13.87455 -13.69209 -13.52948 -12.94216 -12.63770 -12.32319 -11.76977 -11.68465 -11.32412 -11.21359 -11.17303 -11.07339 -10.96533 -10.81431 -10.74177 -10.61078 -10.44086 -10.10460 -8.70879 -8.47848 -7.51272 -6.43998 -4.13606 0.40978 1.56557 3.40942 3.42983 3.61710 3.84810 3.97550 4.32009 4.47608 4.61231 4.64604 4.90247 5.22265 5.33009 5.34006 5.38135 5.54481 5.56144 5.74518 5.90310 6.00911 6.07027 6.18870 6.30838 6.35451 6.86261 7.07522 7.44941 7.69025 8.05438 8.35888 8.49719 8.80023 9.58315 10.95797 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.071838 B = 0.004445 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.673251 B = 6297.036744 C = 6412.782198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.073 2.927 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.598 4.598 8 H 0.055 0.945 9 C 0.184 3.816 10 N -0.677 5.677 11 C 0.082 3.918 12 H 0.075 0.925 13 C -0.152 4.152 14 C -0.116 4.116 15 C -0.103 4.103 16 H 0.090 0.910 17 C -0.007 4.007 18 N -0.016 5.016 19 O -0.154 6.154 20 O -0.178 6.178 21 C -0.104 4.104 22 H 0.267 0.733 23 H -0.022 1.022 24 H 0.017 0.983 25 H 0.333 0.667 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.066 0.934 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.588 -15.397 0.121 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.901 3.099 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.637 4.637 8 H 0.074 0.926 9 C 0.057 3.943 10 N -0.307 5.307 11 C -0.029 4.029 12 H 0.094 0.906 13 C -0.191 4.191 14 C -0.154 4.154 15 C -0.123 4.123 16 H 0.108 0.892 17 C -0.124 4.124 18 N 0.506 4.494 19 O -0.377 6.377 20 O -0.394 6.394 21 C -0.142 4.142 22 H 0.077 0.923 23 H -0.004 1.004 24 H 0.035 0.965 25 H 0.150 0.850 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.323 -13.202 -1.171 13.664 hybrid contribution -0.141 -1.958 0.961 2.186 sum 3.181 -15.160 -0.210 15.491 Atomic orbital electron populations 1.70804 1.06901 1.30408 1.46744 1.25872 0.96469 1.02802 0.93713 0.83479 0.74801 0.75034 0.76571 1.20773 1.21355 1.21433 1.22001 0.94798 0.91320 1.55541 0.92631 1.19677 0.91236 0.88932 0.94477 1.60701 1.20322 1.00620 1.49038 1.22159 0.96202 0.90679 0.93890 0.90649 1.23169 1.02279 0.95003 0.98692 1.22646 0.95909 0.96822 0.99978 1.22356 1.01747 0.89444 0.98720 0.89214 1.24817 1.06970 0.89859 0.90714 1.44823 0.99055 1.02086 1.03468 1.94546 1.52024 1.79210 1.11900 1.94557 1.28882 1.29315 1.86633 1.22224 1.02180 0.94046 0.95797 0.92323 1.00449 0.96507 0.84954 0.91260 0.91402 0.91346 0.89870 0.84568 0.85077 0.91527 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.63 13.65 55.43 0.76 -26.88 16 2 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.05 29.90 -169.99 -5.08 19.96 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.60 -16.85 9.32 -34.44 -0.32 -17.17 16 8 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.18 4.63 4.58 -4.97 -0.02 4.61 16 10 N -0.68 -13.65 6.16 -106.81 -0.66 -14.31 16 11 C 0.08 1.28 3.23 -66.60 -0.22 1.07 16 12 H 0.08 1.25 7.81 -51.93 -0.41 0.85 16 13 C -0.15 -2.13 6.45 -25.07 -0.16 -2.29 16 14 C -0.12 -1.30 5.30 -24.74 -0.13 -1.43 16 15 C -0.10 -1.06 2.93 -88.97 -0.26 -1.32 16 16 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.01 -0.06 5.82 -4.04 -0.02 -0.08 16 18 N -0.02 -0.18 4.23 -10.62 -0.04 -0.22 16 19 O -0.15 -2.00 16.63 -29.46 -0.49 -2.49 16 20 O -0.18 -2.30 19.22 -29.46 -0.57 -2.86 16 21 C -0.10 -1.23 6.17 -25.62 -0.16 -1.38 16 22 H 0.27 8.03 7.22 -40.82 -0.29 7.73 16 23 H -0.02 -0.58 8.01 -51.93 -0.42 -1.00 16 24 H 0.02 0.45 7.93 -51.93 -0.41 0.04 16 25 H 0.33 6.54 8.09 -39.29 -0.32 6.22 16 26 H 0.07 1.02 7.56 -51.93 -0.39 0.63 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.07 0.70 7.97 -51.93 -0.41 0.29 16 29 H 0.08 0.96 7.03 -51.93 -0.37 0.59 16 30 H 0.14 0.89 8.02 -51.93 -0.42 0.47 16 31 H 0.13 0.87 8.11 -51.93 -0.42 0.44 16 32 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 33 H 0.09 1.10 7.92 -51.93 -0.41 0.69 16 LS Contribution 277.98 15.07 4.19 4.19 Total: -1.00 -30.97 277.98 -8.01 -38.98 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.72 Total: 1.28 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -1.39 Total: -17.65 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.05 Total: -41.41 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -1.06 Total: -5.35 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.97 -8.01 -38.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168960011.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.969 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds