Wall clock time and date at job start Sun Mar 29 2020 21:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00346 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.01302 * 33.60255 * 11 10 9 13 13 C 1.54267 * 110.03157 * 272.16632 * 11 10 9 14 14 C 1.54887 * 104.19229 * 217.10703 * 13 11 10 15 15 C 1.54882 * 102.75306 * 37.94008 * 14 13 11 16 16 H 1.08999 * 110.48721 * 80.73257 * 15 14 13 17 17 C 1.52999 * 110.48576 * 203.38232 * 15 14 13 18 18 N 1.46499 * 109.47028 * 289.76929 * 17 15 14 19 19 O 1.21803 * 119.99699 * 45.00798 * 18 17 15 20 20 O 1.21793 * 120.00648 * 225.00093 * 18 17 15 21 21 C 1.53870 * 110.03238 * 154.99843 * 11 10 9 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 24 24 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 25 25 H 1.00899 * 110.99658 * 56.03755 * 10 9 7 26 26 H 1.09004 * 110.48603 * 335.78002 * 13 11 10 27 27 H 1.09000 * 110.48382 * 98.42350 * 13 11 10 28 28 H 1.09003 * 110.75389 * 279.61999 * 14 13 11 29 29 H 1.09001 * 110.75679 * 156.25975 * 14 13 11 30 30 H 1.08993 * 109.47634 * 49.77618 * 17 15 14 31 31 H 1.09002 * 109.46891 * 169.77826 * 17 15 14 32 32 H 1.09003 * 110.02994 * 238.57335 * 21 11 10 33 33 H 1.09006 * 110.03208 * 359.94777 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5055 -4.9071 0.0011 12 1 0.5776 -4.8286 -0.5654 13 6 1.2060 -5.3451 1.4497 14 6 1.4053 -6.8810 1.4309 15 6 2.6219 -7.0564 0.4887 16 1 3.5510 -6.8656 1.0258 17 6 2.6312 -8.4609 -0.1180 18 7 2.9560 -9.4400 0.9222 19 8 2.4193 -9.3701 2.0133 20 8 3.7627 -10.3241 0.6960 21 6 2.4058 -5.9951 -0.6098 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6242 -2.5567 0.8904 24 1 0.6248 -2.5571 -0.8896 25 1 2.8407 -3.5485 0.7818 26 1 1.9064 -4.8780 2.1421 27 1 0.1793 -5.0968 1.7187 28 1 0.5259 -7.3796 1.0233 29 1 1.6333 -7.2532 2.4297 30 1 1.6484 -8.6840 -0.5329 31 1 3.3793 -8.5099 -0.9093 32 1 1.9145 -6.4453 -1.4724 33 1 3.3620 -5.5647 -0.9076 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168960011.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:03 Heat of formation + Delta-G solvation = -51.255129 kcal Electronic energy + Delta-G solvation = -15769.828715 eV Core-core repulsion = 13024.777913 eV Total energy + Delta-G solvation = -2745.050801 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.22147 -39.96425 -37.51039 -36.55528 -34.62651 -32.42190 -29.75832 -28.60375 -26.57305 -24.29252 -24.03407 -21.91427 -21.05398 -19.73457 -19.55894 -18.99992 -18.40737 -16.85743 -16.43932 -15.65278 -15.56127 -15.08667 -14.82591 -14.33688 -14.10934 -13.61791 -13.07914 -12.97693 -12.68370 -12.58647 -12.45402 -12.20367 -12.16536 -12.07013 -11.93681 -11.90963 -11.74757 -11.64781 -10.78843 -10.63724 -9.21861 -8.72998 -6.44448 -0.55123 0.78662 1.52989 1.61086 1.80822 2.54364 3.04542 3.11485 3.21032 3.42357 3.53742 3.76139 3.91472 4.16047 4.32142 4.34455 4.37781 4.52514 4.57017 4.76640 4.85504 4.98400 5.00870 5.10276 5.15960 5.20192 5.35777 5.72832 5.99974 6.37239 6.47196 6.52195 6.66779 7.37815 8.66821 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.071838 B = 0.004445 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.673251 B = 6297.036744 C = 6412.782198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.036 4.036 3 Si 1.122 2.878 4 H -0.284 1.284 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.614 4.614 8 H 0.055 0.945 9 C 0.196 3.804 10 N -0.677 5.677 11 C 0.074 3.926 12 H 0.063 0.937 13 C -0.150 4.150 14 C -0.107 4.107 15 C -0.092 4.092 16 H 0.084 0.916 17 C -0.002 4.002 18 N -0.011 5.011 19 O -0.177 6.177 20 O -0.193 6.193 21 C -0.092 4.092 22 H 0.254 0.746 23 H -0.043 1.043 24 H -0.006 1.006 25 H 0.335 0.665 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.165 0.835 31 H 0.157 0.843 32 H 0.093 0.907 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.688 -16.229 -0.536 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.234 4.234 3 Si 0.943 3.057 4 H -0.209 1.209 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.652 4.652 8 H 0.074 0.926 9 C 0.068 3.932 10 N -0.307 5.307 11 C -0.036 4.036 12 H 0.081 0.919 13 C -0.190 4.190 14 C -0.145 4.145 15 C -0.111 4.111 16 H 0.102 0.898 17 C -0.118 4.118 18 N 0.507 4.493 19 O -0.397 6.397 20 O -0.408 6.408 21 C -0.130 4.130 22 H 0.063 0.937 23 H -0.025 1.025 24 H 0.013 0.987 25 H 0.153 0.847 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.183 0.817 31 H 0.175 0.825 32 H 0.112 0.888 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.429 -14.081 -1.812 14.872 hybrid contribution -0.507 -1.739 1.153 2.147 sum 3.923 -15.820 -0.659 16.312 Atomic orbital electron populations 1.70934 1.07971 1.29688 1.48797 1.27450 0.96507 1.06840 0.92588 0.82865 0.74018 0.70786 0.78030 1.20910 1.19474 1.19355 1.22404 0.95051 0.92745 1.54981 0.92628 1.19344 0.91319 0.90202 0.92348 1.60626 1.19626 1.01172 1.49255 1.22332 0.96432 0.89666 0.95208 0.91910 1.23071 1.01231 0.97428 0.97232 1.22594 0.97127 0.94204 1.00532 1.22160 1.00914 0.90283 0.97791 0.89756 1.24980 1.09421 0.87471 0.89888 1.45208 0.98322 1.02145 1.03629 1.94553 1.52464 1.79637 1.13065 1.94558 1.29291 1.30335 1.86654 1.22065 1.01119 0.93027 0.96826 0.93721 1.02533 0.98749 0.84671 0.92358 0.92600 0.89773 0.89964 0.81749 0.82484 0.88822 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.76 13.65 21.45 0.29 -57.47 16 2 C -0.04 -2.09 5.46 84.65 0.46 -1.63 16 3 Si 1.12 49.81 29.90 68.60 2.05 51.86 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.61 -34.92 9.32 25.60 0.24 -34.68 16 8 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.20 10.17 4.58 85.56 0.39 10.56 16 10 N -0.68 -27.43 6.16 -491.84 -3.03 -30.46 16 11 C 0.07 2.28 3.23 45.64 0.15 2.42 16 12 H 0.06 2.08 7.81 -2.39 -0.02 2.07 16 13 C -0.15 -4.17 6.45 31.67 0.20 -3.97 16 14 C -0.11 -2.19 5.30 31.88 0.17 -2.02 16 15 C -0.09 -1.63 2.93 -9.72 -0.03 -1.66 16 16 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 17 C 0.00 -0.03 5.82 86.38 0.50 0.48 16 18 N -0.01 -0.23 4.23 -187.50 -0.79 -1.02 16 19 O -0.18 -4.26 16.63 18.88 0.31 -3.95 16 20 O -0.19 -4.56 19.22 18.90 0.36 -4.20 16 21 C -0.09 -1.94 6.17 31.32 0.19 -1.74 16 22 H 0.25 15.83 7.22 -92.71 -0.67 15.16 16 23 H -0.04 -2.36 8.01 -2.39 -0.02 -2.38 16 24 H -0.01 -0.31 7.93 -2.39 -0.02 -0.33 16 25 H 0.34 13.22 8.09 -89.69 -0.73 12.49 16 26 H 0.06 1.74 7.56 -2.38 -0.02 1.72 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 1.49 7.97 -2.39 -0.02 1.47 16 29 H 0.08 1.76 7.03 -2.39 -0.02 1.75 16 30 H 0.17 1.34 8.02 -2.39 -0.02 1.32 16 31 H 0.16 1.34 8.11 -2.39 -0.02 1.32 16 32 H 0.09 1.52 7.84 -2.39 -0.02 1.50 16 33 H 0.08 1.86 7.92 -2.38 -0.02 1.84 16 Total: -1.00 -67.76 277.98 1.96 -65.81 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.48 Total: 11.66 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 2.28 Total: -32.23 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -3.53 Total: -88.95 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.68 Total: -8.14 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.05 Total: 51.86 kcal Total: -67.76 1.96 -65.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168960011.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.550 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds