Wall clock time and date at job start Sun Mar 29 2020 22:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 O 1.42898 * 109.47420 * 179.97438 * 12 11 10 14 14 C 1.42901 * 114.00328 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47084 * 180.02562 * 14 13 12 16 16 H 1.08997 * 112.84982 * 45.33419 * 15 14 13 17 17 C 1.53779 * 113.61491 * 176.52905 * 15 14 13 18 18 C 1.53779 * 87.08303 * 139.97583 * 17 15 14 19 19 H 1.09005 * 113.61115 * 89.19939 * 18 17 15 20 20 O 1.42891 * 113.61589 * 220.01654 * 18 17 15 21 21 C 1.53782 * 113.61256 * 274.13533 * 15 14 13 22 22 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 28 28 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 29 29 H 1.09000 * 109.47380 * 300.00763 * 12 11 10 30 30 H 1.09001 * 109.46997 * 60.00426 * 12 11 10 31 31 H 1.08999 * 109.46695 * 300.00370 * 14 13 12 32 32 H 1.08991 * 109.46869 * 59.99914 * 14 13 12 33 33 H 1.08999 * 113.61665 * 254.53271 * 17 15 14 34 34 H 1.09001 * 113.61076 * 25.34828 * 17 15 14 35 35 H 0.96708 * 113.99917 * 179.97438 * 20 18 17 36 36 H 1.09002 * 113.61484 * 334.57197 * 21 15 14 37 37 H 1.09000 * 113.61567 * 105.47005 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 8 1.7603 -7.3875 -0.0018 14 6 2.6003 -8.5436 -0.0018 15 6 1.7331 -9.8041 -0.0025 16 1 0.9117 -9.7524 -0.7171 17 6 2.5426 -11.1088 -0.0878 18 6 1.5521 -11.6978 0.9304 19 1 0.6810 -12.1657 0.4717 20 8 2.1705 -12.5247 1.9181 21 6 1.2997 -10.2544 1.4027 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -3.6042 -0.8905 26 1 2.8721 -3.6043 0.8895 27 1 0.8535 -5.0450 0.8885 28 1 0.8542 -5.0446 -0.8914 29 1 3.1014 -6.0917 -0.8917 30 1 3.1014 -6.0927 0.8882 31 1 3.2296 -8.5354 -0.8918 32 1 3.2295 -8.5355 0.8881 33 1 2.4988 -11.5866 -1.0665 34 1 3.5597 -11.0172 0.2933 35 1 1.5526 -12.8978 2.5617 36 1 1.9759 -9.9291 2.1933 37 1 0.2538 -10.0435 1.6255 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217922882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:45 Heat of formation + Delta-G solvation = -106.597910 kcal Electronic energy + Delta-G solvation = -15145.299431 eV Core-core repulsion = 12501.389130 eV Total energy + Delta-G solvation = -2643.910301 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.73276 -37.66570 -35.37763 -34.44216 -32.30369 -29.20014 -27.50628 -26.00590 -24.58895 -22.51097 -21.69690 -20.05479 -19.72907 -17.81520 -16.39998 -16.20392 -16.09594 -15.53680 -14.99537 -14.44132 -14.42752 -13.73509 -13.24078 -12.72308 -12.45567 -12.31163 -11.97000 -11.72865 -11.52175 -11.22076 -11.09538 -10.95224 -10.69268 -10.55164 -10.46561 -10.36372 -10.05706 -9.64885 -9.41695 -9.28651 -9.03297 -8.31709 -5.96813 -3.99338 3.34988 3.39135 3.41607 3.59088 4.00821 4.29090 4.34047 4.48288 4.59793 4.64412 5.11391 5.21684 5.35327 5.38512 5.41205 5.44427 5.48358 5.52377 5.62741 5.72522 5.79905 5.89134 6.10937 6.14172 6.21648 6.50435 6.81008 6.94576 7.12687 7.31994 7.40885 7.71372 7.86886 8.03894 8.46120 9.07832 9.64391 11.14587 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.089263 B = 0.003078 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.602844 B = 9093.873720 C = 9183.485454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.063 3.937 13 O -0.389 6.389 14 C 0.073 3.927 15 C -0.107 4.107 16 H 0.101 0.899 17 C -0.122 4.122 18 C 0.074 3.926 19 H 0.082 0.918 20 O -0.562 6.562 21 C -0.161 4.161 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.377 0.623 36 H 0.089 0.911 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.371 -22.529 1.165 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.154 4.154 12 C -0.013 4.013 13 O -0.309 6.309 14 C -0.004 4.004 15 C -0.126 4.126 16 H 0.119 0.881 17 C -0.159 4.159 18 C 0.015 3.985 19 H 0.100 0.900 20 O -0.368 6.368 21 C -0.198 4.198 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.225 0.775 36 H 0.108 0.892 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.554 -22.253 0.826 22.550 hybrid contribution 0.203 0.887 0.286 0.953 sum 3.757 -21.366 1.112 21.722 Atomic orbital electron populations 1.69955 1.06058 1.26678 1.50857 1.25033 0.94854 0.99245 0.95388 0.86657 0.79574 0.83157 0.78589 1.20257 1.21287 1.20263 1.21243 0.92994 0.91177 1.50580 0.92774 1.19086 0.93993 0.91168 0.97316 1.21581 0.99189 0.93496 1.00287 1.21634 0.98096 0.92936 1.02713 1.22685 0.95391 0.83606 0.99625 1.87888 1.33989 1.13589 1.95386 1.22380 0.92703 0.85293 0.99983 1.22286 0.99288 0.92528 0.98457 0.88057 1.23061 0.99416 0.94742 0.98685 1.23397 0.95939 0.89177 0.90003 0.90010 1.86516 1.38696 1.67869 1.43678 1.23744 1.02526 0.96165 0.97400 0.92957 0.96535 0.96547 0.93349 0.93348 0.91729 0.91726 0.93679 0.93718 0.93402 0.93409 0.90562 0.89069 0.77534 0.89234 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.12 -2.11 5.58 -26.73 -0.15 -2.26 16 12 C 0.06 0.97 5.94 37.16 0.22 1.19 16 13 O -0.39 -5.88 10.34 -35.23 -0.36 -6.24 16 14 C 0.07 0.85 5.76 37.16 0.21 1.06 16 15 C -0.11 -1.05 4.00 -89.81 -0.36 -1.41 16 16 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.12 -1.02 7.48 -25.92 -0.19 -1.22 16 18 C 0.07 0.59 5.21 -25.83 -0.13 0.46 16 19 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 20 O -0.56 -4.83 13.67 -35.23 -0.48 -5.31 16 21 C -0.16 -1.49 7.48 -25.83 -0.19 -1.68 16 22 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.53 7.88 -51.93 -0.41 0.12 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.81 8.10 -51.93 -0.42 0.38 16 35 H 0.38 1.62 9.12 45.56 0.42 2.03 16 36 H 0.09 0.89 7.92 -51.93 -0.41 0.48 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 309.22 15.07 4.66 4.66 Total: -1.00 -32.27 309.22 -7.62 -39.89 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -5.86 Total: -3.48 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -1.28 Total: -19.72 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.74 Total: -26.73 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.85 Total: -11.55 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.27 -7.62 -39.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217922882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.712 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds