Wall clock time and date at job start Sun Mar 29 2020 22:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 O 1.42898 * 109.47420 * 179.97438 * 12 11 10 14 14 C 1.42901 * 114.00328 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47084 * 180.02562 * 14 13 12 16 16 H 1.08997 * 112.84982 * 45.33419 * 15 14 13 17 17 C 1.53779 * 113.61491 * 176.52905 * 15 14 13 18 18 C 1.53779 * 87.08303 * 139.97583 * 17 15 14 19 19 H 1.09005 * 113.61115 * 89.19939 * 18 17 15 20 20 O 1.42891 * 113.61589 * 220.01654 * 18 17 15 21 21 C 1.53782 * 113.61256 * 274.13533 * 15 14 13 22 22 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 28 28 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 29 29 H 1.09000 * 109.47380 * 300.00763 * 12 11 10 30 30 H 1.09001 * 109.46997 * 60.00426 * 12 11 10 31 31 H 1.08999 * 109.46695 * 300.00370 * 14 13 12 32 32 H 1.08991 * 109.46869 * 59.99914 * 14 13 12 33 33 H 1.08999 * 113.61665 * 254.53271 * 17 15 14 34 34 H 1.09001 * 113.61076 * 25.34828 * 17 15 14 35 35 H 0.96708 * 113.99917 * 179.97438 * 20 18 17 36 36 H 1.09002 * 113.61484 * 334.57197 * 21 15 14 37 37 H 1.09000 * 113.61567 * 105.47005 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 8 1.7603 -7.3875 -0.0018 14 6 2.6003 -8.5436 -0.0018 15 6 1.7331 -9.8041 -0.0025 16 1 0.9117 -9.7524 -0.7171 17 6 2.5426 -11.1088 -0.0878 18 6 1.5521 -11.6978 0.9304 19 1 0.6810 -12.1657 0.4717 20 8 2.1705 -12.5247 1.9181 21 6 1.2997 -10.2544 1.4027 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -3.6042 -0.8905 26 1 2.8721 -3.6043 0.8895 27 1 0.8535 -5.0450 0.8885 28 1 0.8542 -5.0446 -0.8914 29 1 3.1014 -6.0917 -0.8917 30 1 3.1014 -6.0927 0.8882 31 1 3.2296 -8.5354 -0.8918 32 1 3.2295 -8.5355 0.8881 33 1 2.4988 -11.5866 -1.0665 34 1 3.5597 -11.0172 0.2933 35 1 1.5526 -12.8978 2.5617 36 1 1.9759 -9.9291 2.1933 37 1 0.2538 -10.0435 1.6255 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217922882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:45 Heat of formation + Delta-G solvation = -128.393472 kcal Electronic energy + Delta-G solvation = -15146.244558 eV Core-core repulsion = 12501.389130 eV Total energy + Delta-G solvation = -2644.855428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.46218 -38.75084 -36.50532 -35.83446 -34.28724 -30.81115 -28.68527 -26.71219 -26.38030 -23.38624 -23.28783 -21.76742 -20.46582 -18.52116 -18.37188 -17.44401 -17.23955 -16.52603 -16.31996 -15.88717 -15.65742 -14.79350 -14.51258 -14.20070 -13.75449 -13.58078 -13.41224 -12.93846 -12.83375 -12.56893 -12.41552 -12.31973 -12.28312 -11.94970 -11.76933 -11.45691 -11.33599 -11.22873 -11.09267 -10.70563 -10.55598 -10.48638 -8.20081 -6.31994 1.39932 1.43563 1.51509 2.40527 2.62770 3.12681 3.37841 3.58121 3.64986 3.88808 3.98516 4.05872 4.17099 4.37906 4.43148 4.50140 4.52384 4.60422 4.67153 4.77693 4.80755 4.83835 4.88024 5.03175 5.15888 5.20268 5.24730 5.28267 5.44411 5.52561 5.74886 5.85317 6.23961 6.29954 6.85338 6.90671 7.37424 8.91895 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.089263 B = 0.003078 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.602844 B = 9093.873720 C = 9183.485454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.095 4.095 11 C -0.110 4.110 12 C 0.071 3.929 13 O -0.408 6.408 14 C 0.067 3.933 15 C -0.110 4.110 16 H 0.101 0.899 17 C -0.119 4.119 18 C 0.080 3.920 19 H 0.101 0.899 20 O -0.580 6.580 21 C -0.164 4.164 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.010 1.010 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.395 0.605 36 H 0.079 0.921 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.729 -23.176 1.004 23.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.015 4.015 10 C -0.132 4.132 11 C -0.147 4.147 12 C -0.005 4.005 13 O -0.328 6.328 14 C -0.009 4.009 15 C -0.128 4.128 16 H 0.119 0.881 17 C -0.156 4.156 18 C 0.021 3.979 19 H 0.119 0.881 20 O -0.388 6.388 21 C -0.202 4.202 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.008 0.992 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.245 0.755 36 H 0.097 0.903 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.918 -22.927 0.675 23.459 hybrid contribution -0.264 1.037 0.357 1.128 sum 4.654 -21.891 1.032 22.404 Atomic orbital electron populations 1.70099 1.07924 1.27903 1.51643 1.26044 0.95807 1.03575 0.94683 0.85461 0.78234 0.77837 0.79272 1.19022 1.20831 1.19066 1.21714 0.93667 0.92389 1.50649 0.91934 1.19020 0.94517 0.93221 0.94749 1.21362 0.98048 0.92810 1.01023 1.21459 0.98324 0.92999 1.01947 1.22483 0.94322 0.82925 1.00801 1.87848 1.35190 1.14228 1.95564 1.22608 0.92958 0.84622 1.00692 1.22305 0.99420 0.92288 0.98781 0.88064 1.23048 0.99015 0.93893 0.99644 1.23404 0.96296 0.88491 0.89704 0.88092 1.86469 1.40037 1.67917 1.44363 1.23752 1.02165 0.97433 0.96871 0.92733 0.99127 0.99196 0.92467 0.92564 0.92624 0.92478 0.92357 0.92656 0.92302 0.93021 0.89122 0.89593 0.75513 0.90287 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.27 13.29 21.45 0.28 -57.98 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.55 -31.82 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.09 -3.97 5.15 30.60 0.16 -3.82 16 11 C -0.11 -3.97 5.58 30.59 0.17 -3.79 16 12 C 0.07 2.08 5.94 71.98 0.43 2.50 16 13 O -0.41 -11.89 10.34 -148.98 -1.54 -13.43 16 14 C 0.07 1.47 5.76 71.98 0.41 1.88 16 15 C -0.11 -1.99 4.00 -10.27 -0.04 -2.03 16 16 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 17 C -0.12 -1.77 7.48 31.12 0.23 -1.54 16 18 C 0.08 1.14 5.21 31.18 0.16 1.30 16 19 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 20 O -0.58 -8.93 13.67 -148.98 -2.04 -10.97 16 21 C -0.16 -2.87 7.48 31.18 0.23 -2.63 16 22 H 0.26 15.41 8.31 -92.71 -0.77 14.63 16 23 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 25 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.08 7.88 -2.39 -0.02 1.06 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.38 8.10 -2.39 -0.02 1.36 16 35 H 0.39 2.69 9.12 -74.05 -0.68 2.02 16 36 H 0.08 1.53 7.92 -2.39 -0.02 1.51 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -68.75 309.22 1.68 -67.07 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.34 Total: 6.62 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 2.60 Total: -38.11 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.28 Total: -57.98 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -3.58 Total: -24.40 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.75 1.68 -67.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217922882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.325 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds