Wall clock time and date at job start Sun Mar 29 2020 22:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34646 * 116.99941 * 2 1 4 4 O 1.21508 * 119.99880 * 0.02562 * 3 2 1 5 5 N 1.34769 * 120.00030 * 179.97438 * 3 2 1 6 6 C 1.43467 * 118.94228 * 180.02562 * 5 3 2 7 7 C 1.53797 * 107.96572 * 273.63824 * 6 5 3 8 8 C 1.47146 * 111.83771 * 281.66899 * 7 6 5 9 9 N 1.48216 * 110.34150 * 58.29224 * 8 7 6 10 10 C 1.36938 * 119.96494 * 102.46955 * 9 8 7 11 11 H 1.08000 * 120.00542 * 325.93819 * 10 9 8 12 12 C 1.38818 * 119.99686 * 145.94758 * 10 9 8 13 13 N 1.31621 * 119.99750 * 332.06766 * 12 10 9 14 14 Si 1.86795 * 119.99996 * 152.07366 * 12 10 9 15 15 H 1.48496 * 109.47302 * 179.97438 * 14 12 10 16 16 H 1.48499 * 109.47248 * 59.99549 * 14 12 10 17 17 H 1.48500 * 109.47041 * 299.99676 * 14 12 10 18 18 C 1.43619 * 120.05899 * 282.74026 * 9 8 7 19 19 C 1.48859 * 118.94324 * 0.02922 * 5 3 2 20 20 H 1.08997 * 109.46902 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46960 * 299.99271 * 1 2 3 22 22 H 1.08992 * 109.47360 * 59.99380 * 1 2 3 23 23 H 1.08997 * 109.76572 * 154.01688 * 6 5 3 24 24 H 1.09004 * 109.79995 * 33.27380 * 6 5 3 25 25 H 1.08992 * 109.00838 * 161.06092 * 7 6 5 26 26 H 1.08999 * 108.94351 * 42.23137 * 7 6 5 27 27 H 1.09003 * 109.32247 * 298.02939 * 8 7 6 28 28 H 1.08990 * 109.18347 * 178.47278 * 8 7 6 29 29 H 0.96994 * 119.99910 * 354.19814 * 13 12 10 30 30 H 1.09000 * 108.86997 * 211.19948 * 18 9 8 31 31 H 1.09001 * 108.87478 * 329.63494 * 18 9 8 32 32 H 1.09002 * 109.48007 * 260.59910 * 19 5 3 33 33 H 1.09002 * 109.47914 * 20.61987 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0367 2.5604 0.0011 7 6 4.1613 3.0279 -1.4588 8 6 5.2863 2.3765 -2.1481 9 7 5.1236 0.9035 -2.1213 10 6 4.6829 0.2437 -3.2374 11 1 3.9684 0.7146 -3.8963 12 6 5.1542 -1.0307 -3.5217 13 7 6.3498 -1.3969 -3.1108 14 14 4.0918 -2.2256 -4.4874 15 1 4.8192 -3.5091 -4.6571 16 1 3.7869 -1.6498 -5.8219 17 1 2.8249 -2.4677 -3.7516 18 6 5.4222 0.1684 -0.9242 19 6 4.1967 0.0071 0.0004 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8898 23 1 5.0269 2.4884 0.4508 24 1 3.4269 3.2674 0.5637 25 1 4.3125 4.1072 -1.4742 26 1 3.2371 2.7916 -1.9861 27 1 6.2184 2.6455 -1.6510 28 1 5.3180 2.7172 -3.1829 29 1 6.9346 -0.7516 -2.6837 30 1 5.7831 -0.8225 -1.1998 31 1 6.2089 0.6887 -0.3779 32 1 4.5311 -0.2128 1.0143 33 1 3.5730 -0.8101 -0.3620 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338249380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:15 Heat of formation + Delta-G solvation = -49.290398 kcal Electronic energy + Delta-G solvation = -17189.348179 eV Core-core repulsion = 14444.382575 eV Total energy + Delta-G solvation = -2744.965604 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.17248 -37.83564 -35.91783 -34.35875 -32.76489 -30.71203 -28.05796 -26.96828 -25.36323 -23.88026 -21.92625 -19.91500 -19.64285 -17.78741 -17.00463 -16.62691 -16.07261 -15.14917 -14.43054 -14.16026 -13.72993 -13.60186 -13.27347 -12.96451 -12.70746 -12.22527 -12.13008 -11.67334 -11.29028 -10.87496 -10.71374 -10.58663 -10.38455 -10.27455 -10.17694 -10.04386 -9.93940 -9.38391 -8.39771 -8.15210 -6.87420 -6.06383 -3.38365 2.72715 3.32874 3.48243 3.52530 3.69768 4.36873 4.56909 5.15579 5.36164 5.38259 5.43585 5.47975 5.60799 5.69761 5.81961 5.86270 6.00418 6.09495 6.26354 6.38579 6.48124 6.65903 6.73284 6.76139 6.92982 7.04962 7.24464 7.83752 8.05964 8.55925 8.79583 9.09508 9.79568 10.22328 11.10996 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.011930 C = 0.009333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.232843 B = 2346.504811 C = 2999.409175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.367 6.367 3 C 0.645 3.355 4 O -0.592 6.592 5 N -0.567 5.567 6 C 0.143 3.857 7 C -0.153 4.153 8 C 0.141 3.859 9 N -0.582 5.582 10 C -0.347 4.347 11 H 0.048 0.952 12 C -0.019 4.019 13 N -0.902 5.902 14 Si 1.058 2.942 15 H -0.285 1.285 16 H -0.293 1.293 17 H -0.292 1.292 18 C 0.127 3.873 19 C 0.090 3.910 20 H 0.097 0.903 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.027 0.973 28 H 0.056 0.944 29 H 0.269 0.731 30 H 0.091 0.909 31 H 0.028 0.972 32 H 0.053 0.947 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.282 3.170 6.987 9.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.280 6.280 3 C 0.400 3.600 4 O -0.484 6.484 5 N -0.305 5.305 6 C 0.020 3.980 7 C -0.193 4.193 8 C 0.016 3.984 9 N -0.303 5.303 10 C -0.476 4.476 11 H 0.066 0.934 12 C -0.222 4.222 13 N -0.541 5.541 14 Si 0.887 3.113 15 H -0.210 1.210 16 H -0.220 1.220 17 H -0.219 1.219 18 C -0.002 4.002 19 C -0.035 4.035 20 H 0.115 0.885 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.570 1.889 6.373 8.672 hybrid contribution -0.231 1.686 0.501 1.774 sum -5.801 3.575 6.873 9.679 Atomic orbital electron populations 1.23063 0.75670 1.02869 1.02074 1.86294 1.23176 1.31438 1.87123 1.18156 0.83786 0.81721 0.76354 1.90906 1.64766 1.35006 1.57684 1.46529 1.01722 1.08363 1.73852 1.20933 0.97100 0.82784 0.97215 1.21705 1.02130 0.99011 0.96454 1.20157 0.94228 0.85416 0.98611 1.43443 1.77923 1.00852 1.08075 1.19826 1.21887 1.02236 1.03670 0.93420 1.25831 0.96943 0.98899 1.00490 1.70800 1.05162 1.39400 1.38781 0.83633 0.75450 0.76465 0.75739 1.21035 1.21954 1.21892 1.20904 0.92299 1.00337 0.86709 1.23233 0.96651 0.84311 0.99279 0.88477 0.92505 0.92228 0.90610 0.90824 0.92397 0.91798 0.95472 0.92582 0.92020 0.89169 0.95374 0.92848 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.83 10.56 101.05 1.07 1.90 16 2 O -0.37 -6.96 9.18 -40.34 -0.37 -7.33 16 3 C 0.65 13.34 8.10 54.05 0.44 13.78 16 4 O -0.59 -13.04 15.63 -19.28 -0.30 -13.35 16 5 N -0.57 -11.18 2.50 -178.55 -0.45 -11.62 16 6 C 0.14 2.51 5.33 -5.23 -0.03 2.49 16 7 C -0.15 -2.86 5.64 -29.13 -0.16 -3.02 16 8 C 0.14 2.92 5.85 -5.91 -0.03 2.89 16 9 N -0.58 -14.09 2.26 -176.53 -0.40 -14.49 16 10 C -0.35 -9.53 9.35 -15.06 -0.14 -9.67 16 11 H 0.05 1.37 7.97 -52.49 -0.42 0.96 16 12 C -0.02 -0.52 4.80 -17.43 -0.08 -0.60 16 13 N -0.90 -25.91 12.17 55.49 0.68 -25.23 16 14 Si 1.06 25.02 30.00 -169.99 -5.10 19.92 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 C 0.13 2.79 4.73 -4.85 -0.02 2.77 16 19 C 0.09 1.76 6.67 -2.02 -0.01 1.74 16 20 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.08 1.20 7.58 -51.93 -0.39 0.80 16 24 H 0.07 1.25 7.41 -51.93 -0.38 0.87 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.40 7.89 -51.93 -0.41 0.99 16 27 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 28 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 29 H 0.27 7.75 7.22 -40.82 -0.29 7.45 16 30 H 0.09 2.25 5.17 -51.93 -0.27 1.98 16 31 H 0.03 0.56 7.73 -51.93 -0.40 0.16 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.77 7.06 -51.93 -0.37 1.40 16 LS Contribution 268.83 15.07 4.05 4.05 Total: -1.00 -31.39 268.83 -5.55 -36.94 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -4.68 Total: -1.17 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 1.02 Total: 12.27 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.17 Total: -51.34 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.67 Total: -20.68 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.10 Total: 19.92 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.39 -5.55 -36.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338249380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.350 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds