Wall clock time and date at job start Sun Mar 29 2020 22:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34646 * 116.99941 * 2 1 4 4 O 1.21508 * 119.99880 * 0.02562 * 3 2 1 5 5 N 1.34769 * 120.00030 * 179.97438 * 3 2 1 6 6 C 1.43467 * 118.94228 * 180.02562 * 5 3 2 7 7 C 1.53797 * 107.96572 * 273.63824 * 6 5 3 8 8 C 1.47146 * 111.83771 * 281.66899 * 7 6 5 9 9 N 1.48216 * 110.34150 * 58.29224 * 8 7 6 10 10 C 1.36938 * 119.96494 * 102.46955 * 9 8 7 11 11 H 1.08000 * 120.00542 * 325.93819 * 10 9 8 12 12 C 1.38818 * 119.99686 * 145.94758 * 10 9 8 13 13 N 1.31621 * 119.99750 * 332.06766 * 12 10 9 14 14 Si 1.86795 * 119.99996 * 152.07366 * 12 10 9 15 15 H 1.48496 * 109.47302 * 179.97438 * 14 12 10 16 16 H 1.48499 * 109.47248 * 59.99549 * 14 12 10 17 17 H 1.48500 * 109.47041 * 299.99676 * 14 12 10 18 18 C 1.43619 * 120.05899 * 282.74026 * 9 8 7 19 19 C 1.48859 * 118.94324 * 0.02922 * 5 3 2 20 20 H 1.08997 * 109.46902 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46960 * 299.99271 * 1 2 3 22 22 H 1.08992 * 109.47360 * 59.99380 * 1 2 3 23 23 H 1.08997 * 109.76572 * 154.01688 * 6 5 3 24 24 H 1.09004 * 109.79995 * 33.27380 * 6 5 3 25 25 H 1.08992 * 109.00838 * 161.06092 * 7 6 5 26 26 H 1.08999 * 108.94351 * 42.23137 * 7 6 5 27 27 H 1.09003 * 109.32247 * 298.02939 * 8 7 6 28 28 H 1.08990 * 109.18347 * 178.47278 * 8 7 6 29 29 H 0.96994 * 119.99910 * 354.19814 * 13 12 10 30 30 H 1.09000 * 108.86997 * 211.19948 * 18 9 8 31 31 H 1.09001 * 108.87478 * 329.63494 * 18 9 8 32 32 H 1.09002 * 109.48007 * 260.59910 * 19 5 3 33 33 H 1.09002 * 109.47914 * 20.61987 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0367 2.5604 0.0011 7 6 4.1613 3.0279 -1.4588 8 6 5.2863 2.3765 -2.1481 9 7 5.1236 0.9035 -2.1213 10 6 4.6829 0.2437 -3.2374 11 1 3.9684 0.7146 -3.8963 12 6 5.1542 -1.0307 -3.5217 13 7 6.3498 -1.3969 -3.1108 14 14 4.0918 -2.2256 -4.4874 15 1 4.8192 -3.5091 -4.6571 16 1 3.7869 -1.6498 -5.8219 17 1 2.8249 -2.4677 -3.7516 18 6 5.4222 0.1684 -0.9242 19 6 4.1967 0.0071 0.0004 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8898 23 1 5.0269 2.4884 0.4508 24 1 3.4269 3.2674 0.5637 25 1 4.3125 4.1072 -1.4742 26 1 3.2371 2.7916 -1.9861 27 1 6.2184 2.6455 -1.6510 28 1 5.3180 2.7172 -3.1829 29 1 6.9346 -0.7516 -2.6837 30 1 5.7831 -0.8225 -1.1998 31 1 6.2089 0.6887 -0.3779 32 1 4.5311 -0.2128 1.0143 33 1 3.5730 -0.8101 -0.3620 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338249380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:15 Heat of formation + Delta-G solvation = -69.251470 kcal Electronic energy + Delta-G solvation = -17190.213756 eV Core-core repulsion = 14444.382575 eV Total energy + Delta-G solvation = -2745.831181 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.69656 -39.43632 -37.50248 -36.09532 -34.43825 -32.58848 -29.59571 -28.47793 -26.85850 -25.79842 -23.50243 -21.72427 -21.12453 -19.55452 -18.72872 -18.17783 -17.54539 -16.75491 -16.23902 -15.70346 -15.50733 -15.07705 -15.01929 -14.47688 -14.32455 -13.77026 -13.70959 -13.09109 -12.93538 -12.66092 -12.43968 -12.16906 -12.05151 -11.92019 -11.83256 -11.76198 -11.53647 -11.31067 -10.43869 -9.69211 -8.87901 -8.14867 -5.49296 1.31660 1.57257 1.62539 1.77164 1.82662 2.62684 2.93441 3.17059 3.58501 3.96445 4.16266 4.19805 4.30540 4.33238 4.36639 4.42102 4.61645 4.63475 4.69514 4.84967 4.96193 5.06956 5.07371 5.24128 5.32730 5.37315 5.68966 5.89389 6.29120 6.42928 7.12474 7.26348 7.80329 8.20204 8.95726 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.011930 C = 0.009333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.232843 B = 2346.504811 C = 2999.409175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.380 6.380 3 C 0.638 3.362 4 O -0.612 6.612 5 N -0.570 5.570 6 C 0.141 3.859 7 C -0.142 4.142 8 C 0.140 3.860 9 N -0.599 5.599 10 C -0.353 4.353 11 H 0.024 0.976 12 C -0.058 4.058 13 N -0.920 5.920 14 Si 1.099 2.901 15 H -0.285 1.285 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.128 3.872 19 C 0.100 3.900 20 H 0.132 0.868 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.102 0.898 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.025 0.975 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.259 0.741 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.566 3.380 8.079 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.294 6.294 3 C 0.393 3.607 4 O -0.505 6.505 5 N -0.307 5.307 6 C 0.019 3.981 7 C -0.182 4.182 8 C 0.016 3.984 9 N -0.320 5.320 10 C -0.483 4.483 11 H 0.042 0.958 12 C -0.257 4.257 13 N -0.560 5.560 14 Si 0.925 3.075 15 H -0.211 1.211 16 H -0.209 1.209 17 H -0.211 1.211 18 C 0.000 4.000 19 C -0.024 4.024 20 H 0.150 0.850 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.120 0.880 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.858 2.116 7.480 9.734 hybrid contribution -0.165 1.670 0.172 1.687 sum -6.023 3.785 7.652 10.448 Atomic orbital electron populations 1.23426 0.73321 1.05312 1.02286 1.86292 1.25588 1.30680 1.86809 1.18380 0.84131 0.81981 0.76237 1.90879 1.65216 1.35725 1.58709 1.46669 1.01619 1.08985 1.73462 1.21100 0.98495 0.82101 0.96413 1.21559 0.99127 1.00884 0.96650 1.20252 0.96127 0.83627 0.98375 1.43635 1.78102 1.02272 1.08018 1.19835 1.21178 1.02818 1.04491 0.95776 1.26865 0.97269 1.00332 1.01241 1.70896 1.05765 1.39097 1.40267 0.83061 0.74369 0.74815 0.75292 1.21075 1.20877 1.21082 1.20876 0.93825 0.98814 0.86514 1.23066 0.95037 0.83871 1.00461 0.84984 0.91342 0.92994 0.88029 0.89860 0.89088 0.95643 0.93047 0.94231 0.93093 0.92087 0.93127 0.89209 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.35 10.56 113.37 1.20 2.55 16 2 O -0.38 -14.00 9.18 -55.56 -0.51 -14.51 16 3 C 0.64 25.68 8.10 129.79 1.05 26.73 16 4 O -0.61 -26.40 15.63 19.81 0.31 -26.09 16 5 N -0.57 -21.46 2.50 -949.21 -2.38 -23.84 16 6 C 0.14 4.60 5.33 87.21 0.47 5.07 16 7 C -0.14 -5.08 5.64 29.04 0.16 -4.92 16 8 C 0.14 5.66 5.85 84.23 0.49 6.15 16 9 N -0.60 -28.72 2.26 -712.42 -1.61 -30.33 16 10 C -0.35 -19.60 9.35 84.03 0.79 -18.82 16 11 H 0.02 1.44 7.97 -2.91 -0.02 1.41 16 12 C -0.06 -3.23 4.80 84.86 0.41 -2.82 16 13 N -0.92 -53.14 12.17 21.65 0.26 -52.88 16 14 Si 1.10 50.68 30.00 68.60 2.06 52.74 16 15 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 C 0.13 5.50 4.73 87.38 0.41 5.91 16 19 C 0.10 3.74 6.67 86.39 0.58 4.32 16 20 H 0.13 2.54 8.14 -2.39 -0.02 2.53 16 21 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.10 2.80 7.58 -2.39 -0.02 2.78 16 24 H 0.08 2.59 7.41 -2.38 -0.02 2.58 16 25 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.02 1.09 7.89 -2.39 -0.02 1.08 16 27 H 0.05 1.83 8.06 -2.39 -0.02 1.81 16 28 H 0.04 1.69 7.96 -2.39 -0.02 1.67 16 29 H 0.26 15.07 7.22 -92.71 -0.67 14.40 16 30 H 0.06 3.04 5.17 -2.39 -0.01 3.02 16 31 H 0.05 1.91 7.73 -2.39 -0.02 1.89 16 32 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.06 2.60 7.06 -2.39 -0.02 2.58 16 Total: -1.00 -67.52 268.83 4.88 -62.64 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.19 Total: 8.10 kcal Atomic # 6 Polarization: 18.61 SS G_CDS: 5.55 Total: 24.17 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -3.72 Total: -107.04 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -0.20 Total: -40.60 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.06 Total: 52.74 kcal Total: -67.52 4.88 -62.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338249380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.611 kcal (2) G-P(sol) polarization free energy of solvation -67.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds