Wall clock time and date at job start Sun Mar 29 2020 22:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.50702 * 109.47060 * 179.97438 * 15 13 12 17 17 O 1.20828 * 120.00319 * 0.02562 * 16 15 13 18 18 O 1.34232 * 119.99653 * 179.97438 * 16 15 13 19 19 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 22 22 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 23 23 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 24 24 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 25 25 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 26 26 H 0.96705 * 116.99808 * 179.97438 * 18 16 15 27 27 H 1.09001 * 113.77016 * 221.05654 * 19 12 11 28 28 H 1.09005 * 113.86980 * 89.67729 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3442 -7.2458 2.6615 17 8 0.2911 -8.0448 2.0150 18 8 -1.2224 -7.6739 3.5820 19 6 2.1615 -3.7405 -0.0011 20 1 -0.4850 0.8401 0.0004 21 1 -0.3764 -1.7802 -0.9678 22 1 1.3966 -2.5373 2.2104 23 1 -0.2731 -2.8605 1.5670 24 1 0.1879 -5.3004 3.3596 25 1 -1.0946 -5.3215 2.1255 26 1 -1.3127 -8.6305 3.6911 27 1 2.1758 -4.2745 -0.9513 28 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062963.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:04 Heat of formation + Delta-G solvation = -161.092546 kcal Electronic energy + Delta-G solvation = -15983.863349 eV Core-core repulsion = 13000.497883 eV Total energy + Delta-G solvation = -2983.365466 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.65772 -40.73084 -38.91280 -36.95777 -35.77382 -34.10037 -32.42483 -29.88184 -27.06306 -26.95822 -23.48657 -21.64146 -19.86787 -19.31822 -18.99358 -17.88007 -17.35389 -17.29545 -17.00968 -16.35806 -16.11374 -15.80900 -14.92376 -14.42898 -14.09662 -13.90574 -13.76442 -13.36740 -13.16137 -12.81356 -12.72272 -12.48994 -12.23722 -12.17294 -11.69965 -11.33195 -10.84424 -10.59721 -10.20454 -9.54692 -8.24379 -6.40495 1.21675 1.48452 1.52299 1.57353 1.60322 1.63750 2.36433 2.44493 2.98655 3.29841 3.80011 4.17924 4.21553 4.26166 4.40244 4.52790 4.64176 4.85559 4.95909 4.98803 5.28610 5.63378 5.76043 5.96431 6.64597 6.84508 6.99863 7.17901 7.33141 7.51286 8.81458 Molecular weight = 229.08amu Principal moments of inertia in cm(-1) A = 0.056798 B = 0.006076 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.854391 B = 4607.506967 C = 4769.979348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.036 3.964 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.285 1.285 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.216 3.784 10 O -0.588 6.588 11 C 0.091 3.909 12 N -0.633 5.633 13 C 0.517 3.483 14 O -0.573 6.573 15 C -0.122 4.122 16 C 0.486 3.514 17 O -0.525 6.525 18 O -0.505 6.505 19 C 0.111 3.889 20 H 0.276 0.724 21 H 0.389 0.611 22 H 0.099 0.901 23 H 0.079 0.921 24 H 0.166 0.834 25 H 0.156 0.844 26 H 0.430 0.570 27 H 0.054 0.946 28 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 -3.919 8.599 9.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.165 4.165 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.210 1.210 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.175 3.825 10 O -0.401 6.401 11 C -0.031 4.031 12 N -0.368 5.368 13 C 0.307 3.693 14 O -0.452 6.452 15 C -0.162 4.162 16 C 0.328 3.672 17 O -0.413 6.413 18 O -0.319 6.319 19 C -0.012 4.012 20 H 0.086 0.914 21 H 0.244 0.756 22 H 0.117 0.883 23 H 0.098 0.902 24 H 0.184 0.816 25 H 0.174 0.826 26 H 0.292 0.708 27 H 0.072 0.928 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.533 -4.875 8.008 9.711 hybrid contribution 0.070 0.643 -0.049 0.649 sum -2.463 -4.232 7.959 9.344 Atomic orbital electron populations 1.69365 1.06962 1.28893 1.50290 1.25689 0.95755 1.02373 0.92711 0.85422 0.78407 0.78524 0.78450 1.19531 1.19896 1.21035 1.21730 0.94127 0.90862 1.52682 0.91156 1.20139 0.85624 0.91514 0.85252 1.86055 1.45647 1.50340 1.58011 1.24193 1.00850 0.76935 1.01095 1.50142 1.42021 1.04786 1.39817 1.20276 0.83893 0.81202 0.83956 1.90789 1.56649 1.40651 1.57157 1.21107 1.02218 0.91338 1.01500 1.22793 0.76116 0.91928 0.76411 1.90865 1.46049 1.57525 1.46858 1.84452 1.57922 1.34276 1.55278 1.23469 0.94669 0.91776 0.91265 0.91402 0.75606 0.88271 0.90228 0.81644 0.82619 0.70821 0.92782 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -43.94 11.09 21.45 0.24 -43.70 15 2 C 0.04 1.67 5.40 84.66 0.46 2.13 15 3 Si 0.97 38.03 29.54 68.60 2.03 40.06 15 4 H -0.27 -10.26 7.11 99.48 0.71 -9.55 15 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 6 H -0.28 -11.18 7.11 99.48 0.71 -10.47 15 7 C -0.56 -26.67 8.62 25.60 0.22 -26.45 15 8 H 0.07 3.30 7.81 -2.91 -0.02 3.28 15 9 C 0.22 9.89 1.44 -10.88 -0.02 9.87 15 10 O -0.59 -29.56 13.48 -148.98 -2.01 -31.57 15 11 C 0.09 3.49 8.01 86.48 0.69 4.18 15 12 N -0.63 -25.07 3.61 -840.23 -3.03 -28.10 15 13 C 0.52 20.09 8.05 87.66 0.71 20.79 15 14 O -0.57 -27.71 14.91 20.40 0.30 -27.41 15 15 C -0.12 -3.18 6.05 29.10 0.18 -3.01 15 16 C 0.49 13.56 8.32 71.24 0.59 14.16 15 17 O -0.53 -20.33 14.94 29.71 0.44 -19.89 15 18 O -0.50 -9.29 13.42 -51.44 -0.69 -9.98 15 19 C 0.11 4.73 8.22 86.48 0.71 5.44 15 20 H 0.28 12.59 8.31 -92.71 -0.77 11.82 15 21 H 0.39 19.65 6.46 -74.06 -0.48 19.17 15 22 H 0.10 3.48 8.09 -2.39 -0.02 3.46 15 23 H 0.08 2.88 8.14 -2.39 -0.02 2.86 15 24 H 0.17 3.09 8.14 -2.39 -0.02 3.07 15 25 H 0.16 3.32 8.14 -2.39 -0.02 3.30 15 26 H 0.43 4.25 9.10 -74.05 -0.67 3.57 15 27 H 0.05 2.45 8.14 -2.39 -0.02 2.43 15 28 H 0.10 3.97 8.09 -2.38 -0.02 3.95 15 Total: -1.00 -67.59 256.85 0.88 -66.71 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.06 Total: 26.76 kcal Atomic # 6 Polarization: 23.58 SS G_CDS: 3.54 Total: 27.12 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -2.79 Total: -71.80 kcal Atomic # 8 Polarization: -86.90 SS G_CDS: -1.95 Total: -88.86 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -67.59 0.88 -66.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062963.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.380 kcal (2) G-P(sol) polarization free energy of solvation -67.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds