Wall clock time and date at job start Sun Mar 29 2020 21:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00091 * 2 1 4 4 H 1.48498 * 109.47120 * 240.00255 * 3 2 1 5 5 H 1.48504 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46829 * 120.00144 * 3 2 1 7 7 C 1.37873 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00054 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99635 * 179.97438 * 10 9 7 12 12 O 1.21272 * 120.00185 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99545 * 179.97438 * 11 10 9 14 14 H 1.09001 * 109.39213 * 300.19319 * 13 11 10 15 15 C 1.52585 * 109.38767 * 180.49201 * 13 11 10 16 16 C 1.52583 * 110.72705 * 169.17766 * 15 13 11 17 17 C 1.53099 * 109.95720 * 70.67373 * 16 15 13 18 18 S 1.81795 * 108.93887 * 297.04912 * 17 16 15 19 19 C 1.53098 * 109.39174 * 59.99822 * 13 11 10 20 20 H 0.97004 * 119.99839 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47405 * 59.99523 * 9 7 2 22 22 H 1.09000 * 109.46431 * 299.99609 * 9 7 2 23 23 H 0.96994 * 120.00288 * 359.97438 * 10 9 7 24 24 H 1.09001 * 109.22407 * 289.49777 * 15 13 11 25 25 H 1.09001 * 109.22298 * 48.89693 * 15 13 11 26 26 H 1.08997 * 109.38610 * 190.82550 * 16 15 13 27 27 H 1.09000 * 109.38622 * 310.62345 * 16 15 13 28 28 H 1.08993 * 109.57369 * 56.78326 * 17 16 15 29 29 H 1.08999 * 109.57072 * 177.16961 * 17 16 15 30 30 H 1.09002 * 109.57593 * 302.97925 * 19 13 11 31 31 H 1.09001 * 109.57569 * 63.23829 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7536 -4.8833 -0.0019 12 8 0.5613 -5.1049 -0.0019 13 6 2.7330 -6.0287 -0.0022 14 1 3.3612 -5.9675 -0.8909 15 6 1.9682 -7.3490 -0.0150 16 6 2.9122 -8.5173 -0.2836 17 6 3.8141 -8.7504 0.9313 18 16 4.8480 -7.2776 1.1900 19 6 3.6121 -5.9462 1.2485 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5563 -0.8919 22 1 0.6241 -2.5574 0.8881 23 1 3.1566 -3.4354 -0.0010 24 1 1.4847 -7.4931 0.9513 25 1 1.2079 -7.3158 -0.7953 26 1 2.3283 -9.4167 -0.4789 27 1 3.5297 -8.2910 -1.1528 28 1 3.1994 -8.9224 1.8148 29 1 4.4507 -9.6170 0.7526 30 1 4.1168 -4.9805 1.2771 31 1 2.9932 -6.0613 2.1383 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260171852.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:21 Heat of formation + Delta-G solvation = -63.373413 kcal Electronic energy + Delta-G solvation = -13868.554423 eV Core-core repulsion = 11468.012342 eV Total energy + Delta-G solvation = -2400.542081 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.37044 -36.19704 -34.24659 -32.54009 -31.59262 -27.40897 -27.15475 -24.10981 -22.50209 -20.94619 -19.47826 -17.58807 -16.44750 -15.65039 -15.50447 -15.05972 -14.68470 -14.30746 -13.90646 -13.48412 -13.39247 -12.79843 -12.71409 -11.99738 -11.86489 -11.49851 -11.36871 -11.05358 -11.02354 -10.88480 -10.84164 -10.33823 -9.88157 -9.43859 -9.01053 -8.75981 -7.94050 -7.78037 -6.18749 -4.26090 1.66067 2.37083 3.24336 3.28872 3.29298 3.30687 4.00390 4.34235 4.60856 4.67252 4.77450 4.85104 5.08719 5.17456 5.28887 5.38765 5.48258 5.59641 5.63558 5.80550 5.91354 6.11030 6.26991 7.26216 7.37475 7.47740 7.62716 7.94108 8.56692 8.73822 9.03062 9.40641 10.91380 Molecular weight = 229.09amu Principal moments of inertia in cm(-1) A = 0.048301 B = 0.005566 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.561270 B = 5029.741364 C = 5491.014604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.710 5.710 11 C 0.504 3.496 12 O -0.553 6.553 13 C -0.109 4.109 14 H 0.104 0.896 15 C -0.110 4.110 16 C -0.121 4.121 17 C -0.083 4.083 18 S -0.267 6.267 19 C -0.070 4.070 20 H 0.267 0.733 21 H 0.027 0.973 22 H 0.027 0.973 23 H 0.390 0.610 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.360 -14.522 0.849 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.357 5.357 11 C 0.287 3.713 12 O -0.432 6.432 13 C -0.132 4.132 14 H 0.122 0.878 15 C -0.148 4.148 16 C -0.160 4.160 17 C -0.231 4.231 18 S -0.040 6.040 19 C -0.218 4.218 20 H 0.076 0.924 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.223 0.777 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.458 -14.457 0.974 16.778 hybrid contribution -0.393 1.020 -0.063 1.095 sum 8.065 -13.437 0.911 15.698 Atomic orbital electron populations 1.69964 1.06130 1.27457 1.48749 1.24946 0.94911 0.99461 0.94620 0.86470 0.79421 0.82267 0.78731 1.20031 1.21044 1.20042 1.21183 0.93233 0.90446 1.53455 0.91932 1.19122 0.88310 0.81970 0.97768 1.46498 1.11158 1.06152 1.71937 1.20294 0.89154 0.84275 0.77609 1.90656 1.16769 1.84805 1.50961 1.21554 0.97084 0.95422 0.99142 0.87834 1.21328 0.97859 0.91571 1.04051 1.21758 0.97784 0.99095 0.97337 1.23490 1.00511 0.97452 1.01648 1.86847 1.17212 1.03915 1.95982 1.23441 0.98323 0.99710 1.00333 0.92363 0.95494 0.95501 0.77674 0.91287 0.89816 0.90578 0.90555 0.89835 0.87943 0.87088 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 10 N -0.71 -14.64 5.42 -61.48 -0.33 -14.98 16 11 C 0.50 9.77 7.14 -10.98 -0.08 9.69 16 12 O -0.55 -12.99 15.78 5.56 0.09 -12.90 16 13 C -0.11 -1.52 2.37 -91.93 -0.22 -1.74 16 14 H 0.10 1.33 8.05 -51.93 -0.42 0.92 16 15 C -0.11 -1.40 4.37 -27.16 -0.12 -1.52 16 16 C -0.12 -1.16 5.76 -26.89 -0.15 -1.31 16 17 C -0.08 -0.77 6.45 37.21 0.24 -0.53 16 18 S -0.27 -3.13 22.34 -107.50 -2.40 -5.53 16 19 C -0.07 -0.89 5.65 37.21 0.21 -0.68 16 20 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.39 6.94 7.70 -40.82 -0.31 6.62 16 24 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 25 H 0.08 1.17 7.70 -51.93 -0.40 0.77 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.11 1.38 7.48 -51.93 -0.39 0.99 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 271.42 15.07 4.09 4.09 Total: -1.00 -30.92 271.42 -7.84 -38.75 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.43 Total: 2.98 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.57 Total: -2.90 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.40 Total: -40.24 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.40 Total: -5.53 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.92 -7.84 -38.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260171852.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.622 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds