Wall clock time and date at job start Sun Mar 29 2020 21:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00091 * 2 1 4 4 H 1.48498 * 109.47120 * 240.00255 * 3 2 1 5 5 H 1.48504 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46829 * 120.00144 * 3 2 1 7 7 C 1.37873 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00054 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99635 * 179.97438 * 10 9 7 12 12 O 1.21272 * 120.00185 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99545 * 179.97438 * 11 10 9 14 14 H 1.09001 * 109.39213 * 300.19319 * 13 11 10 15 15 C 1.52585 * 109.38767 * 180.49201 * 13 11 10 16 16 C 1.52583 * 110.72705 * 169.17766 * 15 13 11 17 17 C 1.53099 * 109.95720 * 70.67373 * 16 15 13 18 18 S 1.81795 * 108.93887 * 297.04912 * 17 16 15 19 19 C 1.53098 * 109.39174 * 59.99822 * 13 11 10 20 20 H 0.97004 * 119.99839 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47405 * 59.99523 * 9 7 2 22 22 H 1.09000 * 109.46431 * 299.99609 * 9 7 2 23 23 H 0.96994 * 120.00288 * 359.97438 * 10 9 7 24 24 H 1.09001 * 109.22407 * 289.49777 * 15 13 11 25 25 H 1.09001 * 109.22298 * 48.89693 * 15 13 11 26 26 H 1.08997 * 109.38610 * 190.82550 * 16 15 13 27 27 H 1.09000 * 109.38622 * 310.62345 * 16 15 13 28 28 H 1.08993 * 109.57369 * 56.78326 * 17 16 15 29 29 H 1.08999 * 109.57072 * 177.16961 * 17 16 15 30 30 H 1.09002 * 109.57593 * 302.97925 * 19 13 11 31 31 H 1.09001 * 109.57569 * 63.23829 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7536 -4.8833 -0.0019 12 8 0.5613 -5.1049 -0.0019 13 6 2.7330 -6.0287 -0.0022 14 1 3.3612 -5.9675 -0.8909 15 6 1.9682 -7.3490 -0.0150 16 6 2.9122 -8.5173 -0.2836 17 6 3.8141 -8.7504 0.9313 18 16 4.8480 -7.2776 1.1900 19 6 3.6121 -5.9462 1.2485 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5563 -0.8919 22 1 0.6241 -2.5574 0.8881 23 1 3.1566 -3.4354 -0.0010 24 1 1.4847 -7.4931 0.9513 25 1 1.2079 -7.3158 -0.7953 26 1 2.3283 -9.4167 -0.4789 27 1 3.5297 -8.2910 -1.1528 28 1 3.1994 -8.9224 1.8148 29 1 4.4507 -9.6170 0.7526 30 1 4.1168 -4.9805 1.2771 31 1 2.9932 -6.0613 2.1383 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260171852.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:20 Heat of formation + Delta-G solvation = -84.124389 kcal Electronic energy + Delta-G solvation = -13869.454253 eV Core-core repulsion = 11468.012342 eV Total energy + Delta-G solvation = -2401.441911 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.94225 -37.36500 -36.16790 -34.44506 -32.75337 -29.30550 -28.20882 -25.61903 -24.10095 -22.14045 -21.03194 -19.12104 -17.98223 -17.18748 -17.05623 -16.59080 -16.00975 -15.64708 -15.31760 -14.77112 -14.49329 -14.15009 -13.97717 -13.82714 -13.62381 -12.95133 -12.70143 -12.55208 -12.40820 -12.24014 -11.99904 -11.87792 -11.52766 -10.89358 -10.80828 -10.51126 -9.87593 -8.70285 -8.30374 -6.47264 0.74094 1.42077 1.43120 1.46676 1.54859 1.75626 2.30828 2.55271 3.04584 3.59789 3.62186 3.75872 3.91345 4.10343 4.24751 4.36931 4.52644 4.63333 4.80461 4.86541 5.00733 5.11338 5.12517 5.21556 5.29867 5.45642 5.64982 5.82807 6.62936 6.84024 7.21487 7.42019 8.81535 Molecular weight = 229.09amu Principal moments of inertia in cm(-1) A = 0.048301 B = 0.005566 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.561270 B = 5029.741364 C = 5491.014604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.265 3.735 10 N -0.704 5.704 11 C 0.502 3.498 12 O -0.598 6.598 13 C -0.093 4.093 14 H 0.123 0.877 15 C -0.110 4.110 16 C -0.111 4.111 17 C -0.078 4.078 18 S -0.272 6.272 19 C -0.069 4.069 20 H 0.269 0.731 21 H -0.012 1.012 22 H -0.012 1.012 23 H 0.407 0.593 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.113 0.887 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.853 -15.263 0.759 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.101 0.899 9 C 0.142 3.858 10 N -0.354 5.354 11 C 0.287 3.713 12 O -0.480 6.480 13 C -0.115 4.115 14 H 0.141 0.859 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.226 4.226 18 S -0.044 6.044 19 C -0.217 4.217 20 H 0.078 0.922 21 H 0.006 0.994 22 H 0.006 0.994 23 H 0.243 0.757 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.117 0.883 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.145 0.855 30 H 0.131 0.869 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.002 -15.232 0.887 18.811 hybrid contribution -1.215 1.149 -0.032 1.672 sum 9.788 -14.083 0.855 17.171 Atomic orbital electron populations 1.70127 1.08267 1.28656 1.49863 1.26047 0.95751 1.03860 0.93774 0.85220 0.77933 0.76655 0.79502 1.18666 1.21051 1.18688 1.21580 0.94280 0.90594 1.53101 0.89875 1.18562 0.88700 0.84328 0.94164 1.46239 1.11173 1.05601 1.72349 1.21307 0.89554 0.84887 0.75533 1.90632 1.19296 1.85475 1.52552 1.21522 0.95953 0.93269 1.00796 0.85917 1.21345 0.98198 0.92211 1.03037 1.21705 0.97338 0.98287 0.97673 1.23617 1.00465 0.96801 1.01710 1.86914 1.17067 1.04431 1.96032 1.23334 0.98440 1.00931 0.99043 0.92219 0.99375 0.99364 0.75687 0.92217 0.91479 0.88337 0.89851 0.89323 0.85472 0.86868 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.98 42.20 29.54 68.60 2.03 44.23 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.56 -30.28 9.28 25.60 0.24 -30.05 16 8 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 9 C 0.27 14.55 5.43 85.63 0.46 15.01 16 10 N -0.70 -29.59 5.42 -466.80 -2.53 -32.12 16 11 C 0.50 19.83 7.14 87.66 0.63 20.46 16 12 O -0.60 -29.31 15.78 -3.00 -0.05 -29.36 16 13 C -0.09 -2.50 2.37 -11.64 -0.03 -2.52 16 14 H 0.12 2.90 8.05 -2.39 -0.02 2.88 16 15 C -0.11 -2.67 4.37 30.32 0.13 -2.54 16 16 C -0.11 -1.79 5.76 30.49 0.18 -1.62 16 17 C -0.08 -1.19 6.45 72.02 0.46 -0.73 16 18 S -0.27 -5.66 22.34 -56.49 -1.26 -6.92 16 19 C -0.07 -1.66 5.65 72.01 0.41 -1.25 16 20 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 21 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 22 H -0.01 -0.72 8.14 -2.39 -0.02 -0.73 16 23 H 0.41 14.23 7.70 -92.71 -0.71 13.52 16 24 H 0.06 1.55 8.08 -2.39 -0.02 1.53 16 25 H 0.07 1.86 7.70 -2.39 -0.02 1.85 16 26 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.28 8.05 -2.39 -0.02 1.26 16 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 2.65 7.48 -2.39 -0.02 2.63 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -68.99 271.42 1.82 -67.17 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.40 Total: 15.28 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 2.94 Total: -2.47 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -2.25 Total: -87.94 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.05 Total: -29.36 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: -5.66 SS G_CDS: -1.26 Total: -6.92 kcal Total: -68.99 1.82 -67.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260171852.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.953 kcal (2) G-P(sol) polarization free energy of solvation -68.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds