Wall clock time and date at job start Sun Mar 29 2020 22:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86794 * 120.00078 * 2 1 4 4 H 1.48499 * 109.47077 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46863 * 120.00184 * 3 2 1 6 6 H 1.48500 * 109.47431 * 240.00224 * 3 2 1 7 7 C 1.40054 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99654 * 179.97438 * 7 2 1 9 9 C 1.46371 * 120.00291 * 359.97438 * 7 2 1 10 10 O 1.21693 * 119.99837 * 353.80290 * 9 7 2 11 11 N 1.34777 * 120.00178 * 173.80580 * 9 7 2 12 12 C 1.46929 * 120.62915 * 5.03546 * 11 9 7 13 13 C 1.52757 * 109.00628 * 233.58723 * 12 11 9 14 14 C 1.53041 * 109.38263 * 305.58583 * 13 12 11 15 15 O 1.42899 * 109.46250 * 301.21856 * 14 13 12 16 16 C 1.53001 * 109.46378 * 181.26087 * 14 13 12 17 17 O 1.42904 * 109.46937 * 59.93168 * 16 14 13 18 18 C 1.53040 * 109.54048 * 61.24364 * 14 13 12 19 19 C 1.46926 * 120.63040 * 185.31356 * 11 9 7 20 20 H 0.96996 * 119.99903 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.58753 * 353.41538 * 12 11 9 22 22 H 1.08994 * 109.58811 * 113.84479 * 12 11 9 23 23 H 1.08996 * 109.56621 * 185.55263 * 13 12 11 24 24 H 1.09007 * 109.36456 * 65.49531 * 13 12 11 25 25 H 0.96700 * 114.00259 * 300.07556 * 15 14 13 26 26 H 1.08997 * 109.47817 * 179.97438 * 16 14 13 27 27 H 1.08998 * 109.47205 * 299.93389 * 16 14 13 28 28 H 0.96696 * 113.99996 * 180.02562 * 17 16 14 29 29 H 1.09001 * 109.50256 * 178.68731 * 18 14 13 30 30 H 1.08996 * 109.50141 * 58.58206 * 18 14 13 31 31 H 1.08995 * 109.58767 * 246.15481 * 19 11 9 32 32 H 1.09000 * 109.58677 * 6.57914 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 1.2758 2.7464 0.0006 5 1 3.0946 1.6963 1.2125 6 1 3.0945 1.6964 -1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0635 -2.4836 0.1137 11 7 1.9429 -3.6443 -0.1270 12 6 3.4118 -3.6652 -0.1551 13 6 3.8749 -4.4115 -1.4050 14 6 3.2254 -5.7969 -1.4391 15 8 3.5861 -6.5210 -0.2611 16 6 3.7124 -6.5580 -2.6738 17 8 5.1335 -6.6977 -2.6174 18 6 1.7036 -5.6475 -1.4999 19 6 1.2159 -4.9156 -0.2454 20 1 -0.4850 0.8400 0.0004 21 1 3.7914 -2.6438 -0.1797 22 1 3.7871 -4.1755 0.7318 23 1 4.9594 -4.5186 -1.3854 24 1 3.5802 -3.8497 -2.2914 25 1 4.5383 -6.6536 -0.1570 26 1 3.2504 -7.5449 -2.6982 27 1 3.4370 -6.0063 -3.5727 28 1 5.5123 -7.1714 -3.3705 29 1 1.2427 -6.6341 -1.5477 30 1 1.4293 -5.0739 -2.3852 31 1 1.4085 -5.5300 0.6341 32 1 0.1471 -4.7189 -0.3294 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306254075.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:38 Heat of formation + Delta-G solvation = -137.956366 kcal Electronic energy + Delta-G solvation = -16790.735199 eV Core-core repulsion = 13944.206088 eV Total energy + Delta-G solvation = -2846.529111 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.43555 -37.26493 -35.85842 -34.19156 -32.49502 -31.32922 -30.38685 -27.18612 -25.87541 -22.68544 -22.46120 -20.28605 -18.87483 -17.46589 -16.72337 -16.06302 -15.69036 -14.93269 -14.60794 -14.20316 -14.16326 -13.87716 -13.41165 -12.59454 -12.54156 -12.22849 -11.76949 -11.64657 -11.28725 -11.13368 -10.93659 -10.65103 -10.62029 -10.29061 -10.21045 -10.16984 -9.87452 -9.38848 -8.82585 -7.53796 -7.13416 -6.17079 -4.61460 3.16495 3.21459 3.23142 4.06146 4.11198 4.42039 4.59496 4.67098 4.99210 5.06779 5.23295 5.46947 5.49787 5.71355 5.77655 5.94114 6.10435 6.18783 6.19428 6.34191 6.55106 6.57350 6.65510 6.88327 7.44021 7.48421 7.69704 7.92113 8.18532 8.41445 9.04773 9.49793 10.61147 10.79913 Molecular weight = 229.11amu Principal moments of inertia in cm(-1) A = 0.040555 B = 0.007463 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.253761 B = 3750.937813 C = 4153.922965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.560 3.440 10 O -0.580 6.580 11 N -0.641 5.641 12 C 0.127 3.873 13 C -0.155 4.155 14 C 0.142 3.858 15 O -0.551 6.551 16 C 0.049 3.951 17 O -0.572 6.572 18 C -0.118 4.118 19 C 0.128 3.872 20 H 0.268 0.732 21 H 0.091 0.909 22 H 0.045 0.955 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.375 0.625 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.378 0.622 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.348 -10.083 -5.631 14.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.206 1.206 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.463 6.463 11 N -0.379 5.379 12 C 0.003 3.997 13 C -0.194 4.194 14 C 0.101 3.899 15 O -0.357 6.357 16 C -0.029 4.029 17 O -0.378 6.378 18 C -0.157 4.157 19 C 0.004 3.996 20 H 0.079 0.921 21 H 0.110 0.890 22 H 0.063 0.937 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.222 0.778 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.224 0.776 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.732 -9.628 -4.911 13.289 hybrid contribution 1.272 0.390 -0.838 1.573 sum 9.004 -9.238 -5.749 14.123 Atomic orbital electron populations 1.70008 1.07057 1.27342 1.35432 1.25726 0.94599 1.00243 0.92600 0.86466 0.79865 0.81174 0.79449 1.20555 1.19235 1.19303 1.20958 0.93538 0.89337 1.54401 0.90978 1.18233 0.86858 0.82243 0.76112 1.90583 1.14579 1.86193 1.54907 1.48142 1.04697 1.05987 1.79090 1.21236 0.82655 1.00865 0.94981 1.22458 1.00215 0.95735 1.00955 1.21185 0.95288 0.90343 0.83088 1.86507 1.28747 1.77030 1.43424 1.23024 0.81060 0.99545 0.99241 1.86401 1.20984 1.80602 1.49772 1.21895 0.91916 1.00835 1.01014 1.20985 0.97946 0.85833 0.94860 0.92076 0.89049 0.93675 0.90988 0.91160 0.77759 0.93198 0.92962 0.77555 0.91364 0.90592 0.93172 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.29 11.85 55.55 0.66 -22.63 16 2 C 0.09 2.47 5.50 -17.36 -0.10 2.38 16 3 Si 0.91 20.23 29.56 -169.99 -5.02 15.21 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.55 -15.53 8.87 -35.63 -0.32 -15.85 16 8 H 0.07 1.87 5.65 -52.48 -0.30 1.57 16 9 C 0.56 16.34 7.61 -12.99 -0.10 16.24 16 10 O -0.58 -19.14 14.48 5.19 0.08 -19.06 16 11 N -0.64 -15.20 2.98 -174.69 -0.52 -15.72 16 12 C 0.13 2.50 6.08 -3.93 -0.02 2.48 16 13 C -0.15 -2.51 4.94 -26.83 -0.13 -2.65 16 14 C 0.14 2.12 0.79 -90.58 -0.07 2.05 16 15 O -0.55 -8.38 11.71 -44.86 -0.53 -8.91 16 16 C 0.05 0.58 6.17 37.16 0.23 0.81 16 17 O -0.57 -6.09 12.45 -44.86 -0.56 -6.65 16 18 C -0.12 -1.96 5.11 -26.61 -0.14 -2.09 16 19 C 0.13 2.68 6.18 -3.71 -0.02 2.65 16 20 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 21 H 0.09 1.87 5.30 -51.93 -0.28 1.60 16 22 H 0.04 0.85 7.81 -51.93 -0.41 0.45 16 23 H 0.07 1.05 7.64 -51.93 -0.40 0.66 16 24 H 0.07 1.20 8.14 -51.92 -0.42 0.77 16 25 H 0.38 4.68 8.57 45.56 0.39 5.07 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.38 2.27 9.12 45.56 0.42 2.68 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.05 1.03 7.81 -51.93 -0.41 0.62 16 32 H 0.08 1.89 7.04 -51.93 -0.37 1.53 16 LS Contribution 263.54 15.07 3.97 3.97 Total: -1.00 -35.43 263.54 -5.18 -40.61 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -2.59 Total: 7.15 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -0.67 Total: 6.02 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.14 Total: -38.35 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.01 Total: -34.61 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -35.43 -5.18 -40.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306254075.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.344 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds