Wall clock time and date at job start Sun Mar 29 2020 22:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86794 * 120.00078 * 2 1 4 4 H 1.48499 * 109.47077 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46863 * 120.00184 * 3 2 1 6 6 H 1.48500 * 109.47431 * 240.00224 * 3 2 1 7 7 C 1.40054 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99654 * 179.97438 * 7 2 1 9 9 C 1.46371 * 120.00291 * 359.97438 * 7 2 1 10 10 O 1.21693 * 119.99837 * 353.80290 * 9 7 2 11 11 N 1.34777 * 120.00178 * 173.80580 * 9 7 2 12 12 C 1.46929 * 120.62915 * 5.03546 * 11 9 7 13 13 C 1.52757 * 109.00628 * 233.58723 * 12 11 9 14 14 C 1.53041 * 109.38263 * 305.58583 * 13 12 11 15 15 O 1.42899 * 109.46250 * 301.21856 * 14 13 12 16 16 C 1.53001 * 109.46378 * 181.26087 * 14 13 12 17 17 O 1.42904 * 109.46937 * 59.93168 * 16 14 13 18 18 C 1.53040 * 109.54048 * 61.24364 * 14 13 12 19 19 C 1.46926 * 120.63040 * 185.31356 * 11 9 7 20 20 H 0.96996 * 119.99903 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.58753 * 353.41538 * 12 11 9 22 22 H 1.08994 * 109.58811 * 113.84479 * 12 11 9 23 23 H 1.08996 * 109.56621 * 185.55263 * 13 12 11 24 24 H 1.09007 * 109.36456 * 65.49531 * 13 12 11 25 25 H 0.96700 * 114.00259 * 300.07556 * 15 14 13 26 26 H 1.08997 * 109.47817 * 179.97438 * 16 14 13 27 27 H 1.08998 * 109.47205 * 299.93389 * 16 14 13 28 28 H 0.96696 * 113.99996 * 180.02562 * 17 16 14 29 29 H 1.09001 * 109.50256 * 178.68731 * 18 14 13 30 30 H 1.08996 * 109.50141 * 58.58206 * 18 14 13 31 31 H 1.08995 * 109.58767 * 246.15481 * 19 11 9 32 32 H 1.09000 * 109.58677 * 6.57914 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 1.2758 2.7464 0.0006 5 1 3.0946 1.6963 1.2125 6 1 3.0945 1.6964 -1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0635 -2.4836 0.1137 11 7 1.9429 -3.6443 -0.1270 12 6 3.4118 -3.6652 -0.1551 13 6 3.8749 -4.4115 -1.4050 14 6 3.2254 -5.7969 -1.4391 15 8 3.5861 -6.5210 -0.2611 16 6 3.7124 -6.5580 -2.6738 17 8 5.1335 -6.6977 -2.6174 18 6 1.7036 -5.6475 -1.4999 19 6 1.2159 -4.9156 -0.2454 20 1 -0.4850 0.8400 0.0004 21 1 3.7914 -2.6438 -0.1797 22 1 3.7871 -4.1755 0.7318 23 1 4.9594 -4.5186 -1.3854 24 1 3.5802 -3.8497 -2.2914 25 1 4.5383 -6.6536 -0.1570 26 1 3.2504 -7.5449 -2.6982 27 1 3.4370 -6.0063 -3.5727 28 1 5.5123 -7.1714 -3.3705 29 1 1.2427 -6.6341 -1.5477 30 1 1.4293 -5.0739 -2.3852 31 1 1.4085 -5.5300 0.6341 32 1 0.1471 -4.7189 -0.3294 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306254075.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:38 Heat of formation + Delta-G solvation = -168.434532 kcal Electronic energy + Delta-G solvation = -16792.056831 eV Core-core repulsion = 13944.206088 eV Total energy + Delta-G solvation = -2847.850744 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85059 -38.98542 -37.00123 -35.80347 -34.65560 -32.82006 -31.90648 -28.89882 -27.57178 -24.23306 -23.96483 -21.85821 -20.54799 -18.58385 -18.31709 -17.78336 -17.26132 -16.37969 -16.07375 -15.75232 -15.62728 -15.50740 -14.77082 -14.35093 -14.04485 -13.69428 -13.38237 -13.24702 -12.93711 -12.80743 -12.67183 -12.27950 -12.15330 -12.00503 -11.96686 -11.42632 -10.93087 -10.91780 -10.67155 -9.78159 -9.07432 -8.29248 -6.84190 1.39250 1.43052 1.54545 2.23861 2.45678 2.84431 3.18452 3.33410 3.60300 3.80154 3.88658 4.13602 4.25470 4.45615 4.46080 4.52873 4.66182 4.76607 4.84777 4.92999 4.99248 5.05402 5.15160 5.37388 5.40239 5.78098 6.14345 6.41874 6.83860 6.87482 6.95596 7.43327 8.46547 8.67244 Molecular weight = 229.11amu Principal moments of inertia in cm(-1) A = 0.040555 B = 0.007463 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.253761 B = 3750.937813 C = 4153.922965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.274 1.274 5 H -0.255 1.255 6 H -0.251 1.251 7 C -0.571 4.571 8 H 0.093 0.907 9 C 0.539 3.461 10 O -0.635 6.635 11 N -0.643 5.643 12 C 0.123 3.877 13 C -0.145 4.145 14 C 0.142 3.858 15 O -0.563 6.563 16 C 0.061 3.939 17 O -0.582 6.582 18 C -0.111 4.111 19 C 0.125 3.875 20 H 0.274 0.726 21 H 0.080 0.920 22 H 0.054 0.946 23 H 0.096 0.904 24 H 0.061 0.939 25 H 0.388 0.612 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.400 0.600 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.006 -10.447 -6.625 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.179 1.179 6 H -0.175 1.175 7 C -0.607 4.607 8 H 0.111 0.889 9 C 0.345 3.655 10 O -0.522 6.522 11 N -0.380 5.380 12 C 0.000 4.000 13 C -0.183 4.183 14 C 0.102 3.898 15 O -0.371 6.371 16 C -0.017 4.017 17 O -0.391 6.391 18 C -0.150 4.150 19 C 0.002 3.998 20 H 0.084 0.916 21 H 0.098 0.902 22 H 0.073 0.927 23 H 0.114 0.886 24 H 0.080 0.920 25 H 0.238 0.762 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.251 0.749 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.464 -10.060 -5.927 15.679 hybrid contribution 0.468 0.397 -0.484 0.782 sum 10.932 -9.662 -6.411 15.936 Atomic orbital electron populations 1.70189 1.09597 1.28987 1.36596 1.27015 0.95505 1.04965 0.91152 0.85101 0.78269 0.74741 0.80394 1.19894 1.17888 1.17504 1.21486 0.94772 0.89820 1.54640 0.88878 1.18692 0.86547 0.84235 0.75980 1.90529 1.16812 1.87466 1.57420 1.48040 1.06534 1.05539 1.77842 1.21404 0.80042 1.01105 0.97479 1.22363 1.01618 0.96028 0.98311 1.21082 0.93729 0.90141 0.84895 1.86479 1.30121 1.76833 1.43663 1.22732 0.81945 0.99757 0.97265 1.86333 1.20090 1.81222 1.51407 1.21797 0.93850 1.01247 0.98064 1.21062 0.96168 0.85126 0.97492 0.91592 0.90160 0.92730 0.88596 0.92031 0.76234 0.91752 0.92155 0.74930 0.88838 0.90995 0.92952 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.47 11.85 21.84 0.26 -51.22 16 2 C 0.03 1.61 5.50 85.31 0.47 2.08 16 3 Si 1.00 41.34 29.56 68.60 2.03 43.37 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.57 -33.05 8.87 24.83 0.22 -32.83 16 8 H 0.09 4.81 5.65 -2.91 -0.02 4.79 16 9 C 0.54 32.69 7.61 86.36 0.66 33.35 16 10 O -0.63 -44.20 14.48 -4.33 -0.06 -44.26 16 11 N -0.64 -31.14 2.98 -824.82 -2.46 -33.60 16 12 C 0.12 4.75 6.08 86.22 0.52 5.27 16 13 C -0.14 -4.39 4.94 30.53 0.15 -4.24 16 14 C 0.14 3.90 0.79 -10.77 -0.01 3.89 16 15 O -0.56 -15.58 11.71 -139.77 -1.64 -17.22 16 16 C 0.06 1.21 6.17 71.98 0.44 1.65 16 17 O -0.58 -9.93 12.45 -139.77 -1.74 -11.67 16 18 C -0.11 -3.56 5.11 30.67 0.16 -3.40 16 19 C 0.13 5.35 6.18 86.36 0.53 5.88 16 20 H 0.27 15.51 8.29 -92.71 -0.77 14.74 16 21 H 0.08 3.25 5.30 -2.39 -0.01 3.24 16 22 H 0.05 2.00 7.81 -2.39 -0.02 1.98 16 23 H 0.10 2.48 7.64 -2.39 -0.02 2.46 16 24 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 25 H 0.39 8.41 8.57 -74.06 -0.63 7.77 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.40 3.07 9.12 -74.06 -0.68 2.39 16 29 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.05 2.18 7.81 -2.39 -0.02 2.16 16 32 H 0.05 2.44 7.04 -2.39 -0.02 2.43 16 Total: -1.00 -79.87 263.54 -0.62 -80.49 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -0.16 Total: 22.44 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 3.15 Total: 11.67 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.20 Total: -84.81 kcal Atomic # 8 Polarization: -69.71 SS G_CDS: -3.44 Total: -73.15 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -79.87 -0.62 -80.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306254075.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.944 kcal (2) G-P(sol) polarization free energy of solvation -79.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds