Wall clock time and date at job start Sun Mar 29 2020 21:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 120.00395 * 2 1 4 4 O 1.21275 * 119.99937 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99520 * 359.97438 * 3 2 1 6 6 S 1.81000 * 109.47003 * 179.97438 * 5 3 2 7 7 C 1.76195 * 100.00278 * 180.02562 * 6 5 3 8 8 H 1.08003 * 119.99914 * 0.02562 * 7 6 5 9 9 C 1.38802 * 120.00163 * 179.97438 * 7 6 5 10 10 N 1.31630 * 119.99832 * 180.02562 * 9 7 6 11 11 Si 1.86791 * 119.99947 * 359.97438 * 9 7 6 12 12 H 1.48511 * 109.47084 * 90.00105 * 11 9 7 13 13 H 1.48502 * 109.47486 * 209.99565 * 11 9 7 14 14 H 1.48496 * 109.47490 * 330.00368 * 11 9 7 15 15 C 1.46508 * 119.99823 * 179.97438 * 2 1 3 16 16 C 1.53779 * 113.61245 * 60.00172 * 15 2 1 17 17 C 1.53787 * 87.07963 * 219.93163 * 16 15 2 18 18 C 1.53779 * 113.69115 * 322.46366 * 15 2 1 19 19 H 1.08996 * 109.47118 * 269.99830 * 1 2 3 20 20 H 1.09001 * 109.46788 * 30.00123 * 1 2 3 21 21 H 1.09002 * 109.46803 * 150.00054 * 1 2 3 22 22 H 1.08996 * 109.47293 * 299.99655 * 5 3 2 23 23 H 1.09003 * 109.46879 * 60.00400 * 5 3 2 24 24 H 0.96998 * 120.00250 * 179.97438 * 10 9 7 25 25 H 1.09006 * 112.85122 * 191.19534 * 15 2 1 26 26 H 1.08997 * 113.61646 * 105.38794 * 16 15 2 27 27 H 1.09000 * 113.61527 * 334.48065 * 16 15 2 28 28 H 1.09004 * 113.61202 * 139.98084 * 17 16 15 29 29 H 1.08994 * 113.61447 * 270.88515 * 17 16 15 30 30 H 1.09002 * 113.61557 * 25.44454 * 18 15 2 31 31 H 1.09004 * 113.61501 * 254.53874 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4722 -0.0006 6 16 2.5617 3.8480 0.0003 7 6 1.4417 5.2082 0.0002 8 1 0.3764 5.0305 0.0001 9 6 1.9285 6.5080 0.0014 10 7 1.0917 7.5241 0.0018 11 14 3.7709 6.8153 0.0037 12 1 4.2609 6.8974 -1.3959 13 1 4.0589 8.0925 0.7045 14 1 4.4579 5.7005 0.7040 15 6 2.1975 -1.2688 0.0006 16 6 1.8953 -2.1550 -1.2193 17 6 1.9151 -3.3530 -0.2552 18 6 1.5394 -2.3618 0.8590 19 1 -0.3633 0.0000 1.0276 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8900 -0.5138 22 1 0.7592 2.5298 -0.8908 23 1 0.7585 2.5302 0.8892 24 1 1.4318 8.4325 0.0030 25 1 3.2625 -1.1427 0.1955 26 1 2.6991 -2.1737 -1.9553 27 1 0.9176 -1.9681 -1.6634 28 1 1.1410 -4.0922 -0.4614 29 1 2.9029 -3.7965 -0.1301 30 1 0.4643 -2.2314 0.9831 31 1 2.0558 -2.5474 1.8009 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308254885.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:20 Heat of formation + Delta-G solvation = -39.034139 kcal Electronic energy + Delta-G solvation = -13745.685047 eV Core-core repulsion = 11346.198396 eV Total energy + Delta-G solvation = -2399.486651 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27016 -39.09048 -35.53200 -34.68208 -30.95319 -28.08705 -27.87607 -26.53924 -25.53162 -21.25117 -20.00256 -19.62715 -18.34979 -17.34692 -17.07078 -16.85163 -16.20391 -15.76824 -15.03251 -14.76840 -14.58462 -13.77216 -13.59733 -13.38535 -13.35235 -13.18776 -13.04648 -12.93371 -12.75963 -12.13258 -11.85361 -11.48560 -11.31033 -11.18044 -10.89536 -10.54099 -9.63744 -9.02090 -8.52604 -6.23904 0.96972 1.30416 1.45495 1.49647 1.53950 2.10301 2.24528 2.67741 2.85708 3.51091 3.70641 3.72749 3.96614 3.98262 4.13236 4.25947 4.41222 4.64574 4.70528 4.78780 4.80763 4.91925 5.06310 5.07380 5.11091 5.40342 5.64915 5.69934 6.10071 6.27128 6.92687 7.07982 8.59867 Molecular weight = 229.09amu Principal moments of inertia in cm(-1) A = 0.064592 B = 0.005756 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.383954 B = 4863.418356 C = 5151.899596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.599 5.599 3 C 0.529 3.471 4 O -0.567 6.567 5 C -0.105 4.105 6 S -0.180 6.180 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.048 3.952 10 N -0.916 5.916 11 Si 0.913 3.087 12 H -0.262 1.262 13 H -0.257 1.257 14 H -0.239 1.239 15 C 0.100 3.900 16 C -0.149 4.149 17 C -0.125 4.125 18 C -0.140 4.140 19 H 0.072 0.928 20 H 0.075 0.925 21 H 0.101 0.899 22 H 0.112 0.888 23 H 0.111 0.889 24 H 0.277 0.723 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 -21.280 -0.153 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.331 5.331 3 C 0.316 3.684 4 O -0.446 6.446 5 C -0.256 4.256 6 S 0.047 5.953 7 C -0.676 4.676 8 H 0.081 0.919 9 C -0.158 4.158 10 N -0.554 5.554 11 Si 0.735 3.265 12 H -0.187 1.187 13 H -0.182 1.182 14 H -0.163 1.163 15 C -0.003 4.003 16 C -0.188 4.188 17 C -0.163 4.163 18 C -0.178 4.178 19 H 0.091 0.909 20 H 0.094 0.906 21 H 0.120 0.880 22 H 0.130 0.870 23 H 0.129 0.871 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.855 -21.096 -0.144 21.114 hybrid contribution -0.885 0.923 -0.039 1.280 sum -1.740 -20.173 -0.183 20.249 Atomic orbital electron populations 1.22083 0.77170 1.04764 1.03455 1.47882 1.08302 1.04501 1.72455 1.20125 0.87328 0.85547 0.75391 1.90655 1.15504 1.87528 1.50946 1.23292 1.01705 0.93555 1.07014 1.84731 1.13990 0.99057 1.97570 1.22440 0.94357 0.92450 1.58363 0.91891 1.25532 1.02693 0.94714 0.92820 1.70009 1.36765 0.99542 1.49100 0.85882 0.80260 0.80078 0.80243 1.18665 1.18157 1.16274 1.22910 0.97117 0.81027 0.99251 1.23425 1.02853 0.95824 0.96682 1.22647 1.03047 0.95817 0.94770 1.23392 1.02158 0.94096 0.98184 0.90934 0.90649 0.88048 0.87008 0.87101 0.91312 0.89174 0.91847 0.88570 0.88834 0.89593 0.87946 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 8.85 127.77 1.13 2.30 16 2 N -0.60 -15.76 3.08 -819.63 -2.53 -18.28 16 3 C 0.53 19.52 7.69 87.66 0.67 20.20 16 4 O -0.57 -25.69 15.34 -3.01 -0.05 -25.73 16 5 C -0.10 -4.12 4.71 71.24 0.34 -3.79 16 6 S -0.18 -9.34 18.55 -56.49 -1.05 -10.39 16 7 C -0.53 -31.13 10.04 67.95 0.68 -30.44 16 8 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 9 C 0.05 2.83 5.50 84.86 0.47 3.30 16 10 N -0.92 -56.02 13.97 21.65 0.30 -55.72 16 11 Si 0.91 45.47 27.74 68.60 1.90 47.38 16 12 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 14 H -0.24 -11.95 6.74 99.48 0.67 -11.28 16 15 C 0.10 2.28 4.20 45.51 0.19 2.47 16 16 C -0.15 -2.55 7.62 31.12 0.24 -2.31 16 17 C -0.13 -1.56 8.08 31.12 0.25 -1.31 16 18 C -0.14 -2.13 7.51 31.12 0.23 -1.90 16 19 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 20 H 0.07 1.38 6.44 -2.39 -0.02 1.37 16 21 H 0.10 1.18 6.34 -2.39 -0.02 1.16 16 22 H 0.11 4.03 7.40 -2.40 -0.02 4.01 16 23 H 0.11 4.02 8.11 -2.39 -0.02 4.00 16 24 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 25 H 0.09 2.57 7.23 -2.38 -0.02 2.56 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.10 1.41 6.92 -2.39 -0.02 1.39 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.25 6.73 -2.39 -0.02 1.23 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -72.96 270.06 3.86 -69.09 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.08 Total: 5.12 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 4.20 Total: -11.46 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -2.23 Total: -74.00 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.05 Total: -10.39 kcal Total: -72.96 3.86 -69.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308254885.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.060 kcal (2) G-P(sol) polarization free energy of solvation -72.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds