Wall clock time and date at job start Sun Mar 29 2020 22:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99690 * 2 1 4 4 O 1.20834 * 120.00069 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00118 * 180.27442 * 3 2 1 6 6 N 1.46896 * 109.47283 * 179.72335 * 5 3 2 7 7 C 1.47441 * 110.99947 * 69.87446 * 6 5 3 8 8 C 1.54313 * 107.23271 * 123.25866 * 7 6 5 9 9 C 1.55144 * 103.02100 * 22.27977 * 8 7 6 10 10 O 1.42903 * 110.98477 * 82.47871 * 9 8 7 11 11 C 1.50705 * 110.99020 * 206.25422 * 9 8 7 12 12 H 1.07996 * 119.99248 * 116.91388 * 11 9 8 13 13 C 1.37872 * 120.00186 * 296.90579 * 11 9 8 14 14 N 1.31512 * 120.00021 * 5.06449 * 13 11 9 15 15 Si 1.86800 * 120.00107 * 185.06103 * 13 11 9 16 16 H 1.48493 * 109.46970 * 84.99867 * 15 13 11 17 17 H 1.48498 * 109.47455 * 205.00281 * 15 13 11 18 18 H 1.48507 * 109.46839 * 325.00073 * 15 13 11 19 19 C 1.47844 * 110.99909 * 190.71778 * 6 5 3 20 20 H 1.09005 * 109.46797 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47648 * 300.00032 * 1 2 3 22 22 H 1.09006 * 109.47179 * 60.00478 * 1 2 3 23 23 H 1.09002 * 109.46770 * 299.72776 * 5 3 2 24 24 H 1.08997 * 109.46600 * 59.72251 * 5 3 2 25 25 H 1.08999 * 109.88829 * 242.66285 * 7 6 5 26 26 H 1.08993 * 109.88836 * 3.85222 * 7 6 5 27 27 H 1.09004 * 110.70879 * 140.66681 * 8 7 6 28 28 H 1.09007 * 110.70568 * 263.89757 * 8 7 6 29 29 H 0.96694 * 114.00232 * 54.62256 * 10 9 8 30 30 H 0.97006 * 120.00319 * 180.02562 * 14 13 11 31 31 H 1.09004 * 110.37178 * 332.46457 * 19 6 5 32 32 H 1.09000 * 110.37369 * 94.80972 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0063 6 7 3.9827 2.6837 -0.0117 7 6 3.6835 3.3281 1.2803 8 6 5.0105 3.8956 1.8263 9 6 5.8808 4.0389 0.5500 10 8 5.5812 5.2540 -0.1399 11 6 7.3479 3.9594 0.8853 12 1 7.9493 3.1545 0.4894 13 6 7.9223 4.9143 1.6971 14 7 7.1723 5.8367 2.2595 15 14 9.7657 4.8979 1.9985 16 1 10.4533 5.6230 0.9001 17 1 10.0618 5.5636 3.2925 18 1 10.2476 3.4939 2.0425 19 6 5.4324 2.8066 -0.2745 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8901 23 1 3.9595 0.7832 0.8835 24 1 3.9524 0.7785 -0.8965 25 1 2.9667 4.1362 1.1344 26 1 3.2801 2.5930 1.9767 27 1 4.8506 4.8667 2.2948 28 1 5.4679 3.1985 2.5284 29 1 5.6555 6.0466 0.4089 30 1 7.5764 6.5089 2.8304 31 1 5.9565 1.9127 0.0637 32 1 5.6126 2.9745 -1.3363 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:46 Heat of formation + Delta-G solvation = -123.693121 kcal Electronic energy + Delta-G solvation = -16515.310876 eV Core-core repulsion = 13669.400266 eV Total energy + Delta-G solvation = -2845.910611 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.29264 -38.29299 -36.24805 -34.58068 -32.14698 -30.56963 -28.24248 -28.01628 -26.08739 -24.11581 -21.20944 -19.89958 -19.63484 -17.33914 -17.07388 -16.43733 -16.22088 -15.21323 -14.86397 -14.57168 -13.98474 -13.51573 -13.42418 -12.54498 -12.36488 -12.34601 -11.99504 -11.70285 -11.29643 -11.21268 -11.07466 -10.80565 -10.69134 -10.40620 -10.32631 -10.12587 -9.86066 -9.21965 -8.61112 -8.08174 -7.71022 -6.20262 -4.28263 2.44344 2.76511 3.23631 3.30345 3.32425 4.29790 4.60567 4.98194 5.07438 5.08042 5.13920 5.37430 5.45648 5.51376 5.67473 5.89428 6.04761 6.14486 6.44542 6.50322 6.63799 6.86717 7.05246 7.35369 7.47560 7.55451 7.55667 7.81491 8.02223 8.17154 8.73224 9.40271 9.48788 10.86836 Molecular weight = 229.11amu Principal moments of inertia in cm(-1) A = 0.062281 B = 0.006075 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.468569 B = 4608.191481 C = 4729.688954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.458 3.542 4 O -0.485 6.485 5 C 0.059 3.941 6 N -0.516 5.516 7 C 0.049 3.951 8 C -0.146 4.146 9 C 0.253 3.747 10 O -0.576 6.576 11 C -0.537 4.537 12 H 0.061 0.939 13 C 0.073 3.927 14 N -0.893 5.893 15 Si 0.899 3.101 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.059 3.941 20 H 0.097 0.903 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.375 0.625 30 H 0.266 0.734 31 H 0.052 0.948 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 -9.556 -1.376 12.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.299 3.701 4 O -0.370 6.370 5 C -0.071 4.071 6 N -0.241 5.241 7 C -0.078 4.078 8 C -0.185 4.185 9 C 0.212 3.788 10 O -0.383 6.383 11 C -0.575 4.575 12 H 0.079 0.921 13 C -0.129 4.129 14 N -0.531 5.531 15 Si 0.727 3.273 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.067 4.067 20 H 0.115 0.885 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.129 0.871 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.223 0.777 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.493 -9.275 -2.149 12.758 hybrid contribution 1.243 0.006 1.411 1.880 sum -7.250 -9.269 -0.739 11.790 Atomic orbital electron populations 1.23180 0.76885 1.03183 1.02434 1.86497 1.23053 1.34163 1.84842 1.23926 0.92272 0.81136 0.72790 1.90666 1.66707 1.36139 1.43467 1.21780 0.87361 0.93907 1.04051 1.63383 1.18303 1.09457 1.32972 1.22864 0.99208 0.97937 0.87789 1.23343 0.93485 1.01493 1.00225 1.19513 0.91838 0.81645 0.85759 1.86172 1.92491 1.17096 1.42560 1.21489 0.94235 1.11509 1.30283 0.92051 1.24982 0.98518 0.95077 0.94359 1.69784 1.35386 1.16401 1.31563 0.86497 0.84976 0.78298 0.77527 1.20333 1.21208 1.19903 1.23069 0.83948 0.98448 1.01231 0.88459 0.92137 0.92054 0.90864 0.87142 0.90986 0.95007 0.90164 0.92448 0.77670 0.92403 0.93025 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -4.99 10.57 -39.24 -0.41 -5.40 16 3 C 0.46 7.41 7.60 36.01 0.27 7.69 16 4 O -0.49 -9.37 15.30 -18.76 -0.29 -9.65 16 5 C 0.06 0.93 5.14 -4.98 -0.03 0.90 16 6 N -0.52 -10.35 4.85 -232.70 -1.13 -11.48 16 7 C 0.05 1.03 5.65 -2.84 -0.02 1.01 16 8 C -0.15 -3.40 5.34 -24.91 -0.13 -3.53 16 9 C 0.25 6.27 0.86 -89.63 -0.08 6.20 16 10 O -0.58 -15.22 13.14 -35.23 -0.46 -15.68 16 11 C -0.54 -14.25 8.25 -34.44 -0.28 -14.53 16 12 H 0.06 1.60 7.79 -52.49 -0.41 1.19 16 13 C 0.07 1.93 5.32 -17.82 -0.09 1.84 16 14 N -0.89 -23.83 10.85 55.43 0.60 -23.23 16 15 Si 0.90 20.52 29.54 -169.99 -5.02 15.49 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.06 1.27 5.86 -2.30 -0.01 1.26 16 20 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 22 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 23 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 24 H 0.11 1.48 8.07 -51.93 -0.42 1.07 16 25 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 26 H 0.03 0.60 7.31 -51.93 -0.38 0.22 16 27 H 0.08 1.98 7.47 -51.93 -0.39 1.59 16 28 H 0.06 1.34 8.03 -51.92 -0.42 0.92 16 29 H 0.37 9.86 7.71 45.56 0.35 10.21 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.05 1.02 7.70 -51.93 -0.40 0.62 16 32 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 271.19 15.07 4.09 4.09 Total: -1.00 -29.77 271.19 -5.65 -35.42 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -3.72 Total: 8.17 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 0.70 Total: 2.27 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: -0.53 Total: -34.70 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.16 Total: -30.74 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.77 -5.65 -35.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.272 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds