Wall clock time and date at job start Sun Mar 29 2020 22:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99690 * 2 1 4 4 O 1.20834 * 120.00069 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00118 * 180.27442 * 3 2 1 6 6 N 1.46896 * 109.47283 * 179.72335 * 5 3 2 7 7 C 1.47441 * 110.99947 * 69.87446 * 6 5 3 8 8 C 1.54313 * 107.23271 * 123.25866 * 7 6 5 9 9 C 1.55144 * 103.02100 * 22.27977 * 8 7 6 10 10 O 1.42903 * 110.98477 * 82.47871 * 9 8 7 11 11 C 1.50705 * 110.99020 * 206.25422 * 9 8 7 12 12 H 1.07996 * 119.99248 * 116.91388 * 11 9 8 13 13 C 1.37872 * 120.00186 * 296.90579 * 11 9 8 14 14 N 1.31512 * 120.00021 * 5.06449 * 13 11 9 15 15 Si 1.86800 * 120.00107 * 185.06103 * 13 11 9 16 16 H 1.48493 * 109.46970 * 84.99867 * 15 13 11 17 17 H 1.48498 * 109.47455 * 205.00281 * 15 13 11 18 18 H 1.48507 * 109.46839 * 325.00073 * 15 13 11 19 19 C 1.47844 * 110.99909 * 190.71778 * 6 5 3 20 20 H 1.09005 * 109.46797 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47648 * 300.00032 * 1 2 3 22 22 H 1.09006 * 109.47179 * 60.00478 * 1 2 3 23 23 H 1.09002 * 109.46770 * 299.72776 * 5 3 2 24 24 H 1.08997 * 109.46600 * 59.72251 * 5 3 2 25 25 H 1.08999 * 109.88829 * 242.66285 * 7 6 5 26 26 H 1.08993 * 109.88836 * 3.85222 * 7 6 5 27 27 H 1.09004 * 110.70879 * 140.66681 * 8 7 6 28 28 H 1.09007 * 110.70568 * 263.89757 * 8 7 6 29 29 H 0.96694 * 114.00232 * 54.62256 * 10 9 8 30 30 H 0.97006 * 120.00319 * 180.02562 * 14 13 11 31 31 H 1.09004 * 110.37178 * 332.46457 * 19 6 5 32 32 H 1.09000 * 110.37369 * 94.80972 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0063 6 7 3.9827 2.6837 -0.0117 7 6 3.6835 3.3281 1.2803 8 6 5.0105 3.8956 1.8263 9 6 5.8808 4.0389 0.5500 10 8 5.5812 5.2540 -0.1399 11 6 7.3479 3.9594 0.8853 12 1 7.9493 3.1545 0.4894 13 6 7.9223 4.9143 1.6971 14 7 7.1723 5.8367 2.2595 15 14 9.7657 4.8979 1.9985 16 1 10.4533 5.6230 0.9001 17 1 10.0618 5.5636 3.2925 18 1 10.2476 3.4939 2.0425 19 6 5.4324 2.8066 -0.2745 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8901 23 1 3.9595 0.7832 0.8835 24 1 3.9524 0.7785 -0.8965 25 1 2.9667 4.1362 1.1344 26 1 3.2801 2.5930 1.9767 27 1 4.8506 4.8667 2.2948 28 1 5.4679 3.1985 2.5284 29 1 5.6555 6.0466 0.4089 30 1 7.5764 6.5089 2.8304 31 1 5.9565 1.9127 0.0637 32 1 5.6126 2.9745 -1.3363 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:46 Heat of formation + Delta-G solvation = -146.353241 kcal Electronic energy + Delta-G solvation = -16516.293493 eV Core-core repulsion = 13669.400266 eV Total energy + Delta-G solvation = -2846.893227 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.53959 -39.94325 -37.52324 -36.35722 -34.17821 -32.17685 -29.95048 -29.30474 -27.49720 -25.86426 -22.62365 -21.49305 -21.36239 -19.00036 -18.56466 -17.65604 -17.48962 -16.88354 -16.79793 -16.13443 -15.75997 -14.81703 -14.67239 -14.29213 -13.94114 -13.80132 -13.48376 -13.12131 -12.94115 -12.88262 -12.81754 -12.57403 -12.21271 -12.20789 -11.77515 -11.72064 -11.43690 -11.10209 -10.60188 -10.07341 -9.26185 -8.18842 -6.34205 1.21133 1.43270 1.45923 1.53649 1.65809 2.40851 3.03758 3.13415 3.82084 3.95767 4.06805 4.12322 4.32418 4.34642 4.36012 4.37335 4.45213 4.71483 4.72371 4.88698 5.07650 5.23646 5.36046 5.44716 5.55489 5.79600 5.89090 6.05264 6.22213 6.71551 6.82151 7.37105 7.43357 8.86702 Molecular weight = 229.11amu Principal moments of inertia in cm(-1) A = 0.062281 B = 0.006075 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.468569 B = 4608.191481 C = 4729.688954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.363 6.363 3 C 0.463 3.537 4 O -0.524 6.524 5 C 0.055 3.945 6 N -0.530 5.530 7 C 0.063 3.937 8 C -0.136 4.136 9 C 0.232 3.768 10 O -0.588 6.588 11 C -0.559 4.559 12 H 0.061 0.939 13 C 0.030 3.970 14 N -0.912 5.912 15 Si 0.960 3.040 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.267 1.267 19 C 0.069 3.931 20 H 0.136 0.864 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.095 0.905 24 H 0.139 0.861 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.370 0.630 30 H 0.267 0.733 31 H 0.070 0.930 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.754 -11.451 -1.460 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.412 6.412 5 C -0.074 4.074 6 N -0.256 5.256 7 C -0.065 4.065 8 C -0.175 4.175 9 C 0.192 3.808 10 O -0.395 6.395 11 C -0.597 4.597 12 H 0.079 0.921 13 C -0.170 4.170 14 N -0.551 5.551 15 Si 0.786 3.214 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.057 4.057 20 H 0.154 0.846 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.113 0.887 24 H 0.157 0.843 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.217 0.783 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.388 -11.209 -2.239 14.178 hybrid contribution 1.136 0.544 1.423 1.900 sum -7.252 -10.665 -0.817 12.923 Atomic orbital electron populations 1.23526 0.74851 1.05682 1.02300 1.86479 1.24949 1.32444 1.84097 1.23933 0.92366 0.81284 0.71782 1.90664 1.67515 1.37508 1.45505 1.21920 0.87496 0.91551 1.06431 1.63223 1.17408 1.12544 1.32387 1.22643 0.97254 0.97973 0.88612 1.23140 0.94635 1.00281 0.99471 1.19819 0.91686 0.82095 0.87151 1.86166 1.92578 1.17636 1.43080 1.21794 0.95388 1.11877 1.30629 0.92051 1.25699 1.02379 0.94811 0.94158 1.69886 1.36768 1.16696 1.31726 0.85547 0.80201 0.78476 0.77210 1.20419 1.20936 1.19124 1.22922 0.84930 0.97468 1.00429 0.84640 0.92357 0.92214 0.88731 0.84316 0.92846 0.93098 0.92472 0.92911 0.78285 0.92384 0.91192 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.72 16 2 O -0.36 -8.84 10.57 -51.37 -0.54 -9.38 16 3 C 0.46 14.05 7.60 71.24 0.54 14.59 16 4 O -0.52 -19.72 15.30 21.94 0.34 -19.38 16 5 C 0.05 1.58 5.14 85.56 0.44 2.02 16 6 N -0.53 -20.52 4.85 -890.14 -4.32 -24.84 16 7 C 0.06 2.58 5.65 86.64 0.49 3.07 16 8 C -0.14 -6.35 5.34 31.77 0.17 -6.18 16 9 C 0.23 11.53 0.86 -10.15 -0.01 11.52 16 10 O -0.59 -31.59 13.14 -148.98 -1.96 -33.55 16 11 C -0.56 -29.49 8.25 25.60 0.21 -29.28 16 12 H 0.06 3.15 7.79 -2.91 -0.02 3.13 16 13 C 0.03 1.59 5.32 84.65 0.45 2.04 16 14 N -0.91 -49.08 10.85 21.44 0.23 -48.85 16 15 Si 0.96 41.72 29.54 68.60 2.03 43.74 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 C 0.07 2.86 5.86 86.77 0.51 3.37 16 20 H 0.14 1.37 8.14 -2.38 -0.02 1.35 16 21 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 22 H 0.06 1.10 8.13 -2.38 -0.02 1.09 16 23 H 0.10 2.40 7.96 -2.39 -0.02 2.38 16 24 H 0.14 3.23 8.07 -2.39 -0.02 3.21 16 25 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.05 1.87 7.31 -2.39 -0.02 1.85 16 27 H 0.06 2.89 7.47 -2.38 -0.02 2.87 16 28 H 0.05 2.46 8.03 -2.38 -0.02 2.44 16 29 H 0.37 20.06 7.71 -74.06 -0.57 19.49 16 30 H 0.27 13.74 8.31 -92.70 -0.77 12.97 16 31 H 0.07 2.61 7.70 -2.39 -0.02 2.59 16 32 H 0.07 3.02 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -63.15 271.19 0.32 -62.83 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.55 Total: 26.56 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 4.00 Total: 2.87 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -4.09 Total: -73.69 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -2.16 Total: -62.31 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -63.15 0.32 -62.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.523 kcal (2) G-P(sol) polarization free energy of solvation -63.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds