Wall clock time and date at job start Sun Mar 29 2020 22:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00031 * 2 1 4 4 C 1.53005 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.50876 * 54.89487 * 4 3 2 6 6 C 1.53291 * 109.51237 * 174.99664 * 4 3 2 7 7 N 1.47144 * 108.38602 * 172.27416 * 6 4 3 8 8 C 1.34780 * 120.98504 * 129.44175 * 7 6 4 9 9 O 1.21687 * 119.99617 * 4.57392 * 8 7 6 10 10 C 1.46365 * 120.00410 * 184.29589 * 8 7 6 11 11 H 1.08008 * 119.99844 * 353.41303 * 10 8 7 12 12 C 1.40051 * 120.00465 * 173.40728 * 10 8 7 13 13 N 1.30675 * 119.99598 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00349 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47176 * 90.00510 * 14 12 10 16 16 H 1.48506 * 109.47134 * 210.00284 * 14 12 10 17 17 H 1.48499 * 109.47081 * 330.00128 * 14 12 10 18 18 C 1.47156 * 118.03747 * 309.72168 * 7 6 4 19 19 C 1.52876 * 108.60901 * 50.21973 * 18 7 6 20 20 O 1.42958 * 109.55052 * 294.77085 * 4 3 2 21 21 H 1.08996 * 109.47297 * 300.00076 * 1 2 3 22 22 H 1.08996 * 109.46771 * 60.00295 * 1 2 3 23 23 H 1.08994 * 109.46797 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47446 * 59.99911 * 3 2 1 25 25 H 1.09007 * 109.46754 * 299.99746 * 3 2 1 26 26 H 1.09006 * 109.67932 * 52.54950 * 6 4 3 27 27 H 1.09004 * 109.71675 * 292.02065 * 6 4 3 28 28 H 0.97000 * 119.99986 * 179.97438 * 13 12 10 29 29 H 1.09001 * 109.68420 * 170.00489 * 18 7 6 30 30 H 1.09003 * 109.67975 * 290.55486 * 18 7 6 31 31 H 1.08995 * 109.58506 * 187.92341 * 19 18 7 32 32 H 1.08998 * 109.40645 * 67.84646 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8514 0.5671 -0.8414 6 6 4.1595 2.5792 -0.1267 7 7 5.6136 2.4557 0.0619 8 6 6.4762 2.9962 -0.8215 9 8 6.0587 3.6675 -1.7466 10 6 7.9154 2.7809 -0.6647 11 1 8.2939 2.2805 0.2145 12 6 8.8017 3.2235 -1.6546 13 7 8.3438 3.8292 -2.7181 14 14 10.6385 2.9492 -1.4541 15 1 11.0124 1.6431 -2.0537 16 1 11.3794 4.0387 -2.1394 17 1 10.9841 2.9480 -0.0099 18 6 6.0983 1.7193 1.2401 19 6 5.3798 0.3713 1.3024 20 8 3.9684 0.5840 1.2223 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.6887 1.8464 0.8899 25 1 1.6886 1.8464 -0.8901 26 1 3.7448 3.2373 0.6370 27 1 3.9509 2.9874 -1.1156 28 1 8.9577 4.1361 -3.4035 29 1 7.1729 1.5577 1.1556 30 1 5.8823 2.2893 2.1437 31 1 5.6201 -0.1278 2.2411 32 1 5.7023 -0.2500 0.4669 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613972738.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:22 Heat of formation + Delta-G solvation = -120.409505 kcal Electronic energy + Delta-G solvation = -16436.297715 eV Core-core repulsion = 13590.529493 eV Total energy + Delta-G solvation = -2845.768222 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.26369 -37.58518 -36.55202 -33.37737 -32.57835 -31.90114 -27.96574 -27.25157 -26.10400 -24.35810 -22.61186 -20.96554 -19.17724 -16.80025 -16.48305 -16.31280 -15.84000 -15.35482 -14.98490 -14.58305 -14.31353 -14.08341 -13.62180 -13.44700 -12.46005 -12.30455 -11.81925 -11.64905 -11.55341 -11.26234 -11.17010 -11.00409 -10.70469 -10.29319 -10.20903 -10.01739 -9.64440 -9.43441 -8.90563 -7.67682 -7.28462 -6.26659 -4.71744 3.10387 3.17444 3.20589 3.72628 3.99422 4.08599 4.47265 4.50277 5.14197 5.26405 5.35590 5.37693 5.44447 5.54194 5.55352 5.61968 5.69685 5.75671 5.95168 5.98560 6.11246 6.34184 6.37567 6.56106 7.18955 7.38858 7.45577 7.57474 8.03370 8.25520 8.95435 9.32819 10.49353 10.67865 Molecular weight = 229.11amu Principal moments of inertia in cm(-1) A = 0.048868 B = 0.006393 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.829819 B = 4378.853452 C = 4723.110442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.073 3.927 4 C 0.081 3.919 5 H 0.066 0.934 6 C 0.097 3.903 7 N -0.644 5.644 8 C 0.560 3.440 9 O -0.576 6.576 10 C -0.544 4.544 11 H 0.074 0.926 12 C 0.088 3.912 13 N -0.768 5.768 14 Si 0.909 3.091 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.264 1.264 18 C 0.087 3.913 19 C 0.048 3.952 20 O -0.379 6.379 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.269 0.731 29 H 0.102 0.898 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.323 -6.052 6.423 12.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.004 4.004 4 C 0.022 3.978 5 H 0.084 0.916 6 C -0.028 4.028 7 N -0.383 5.383 8 C 0.367 3.633 9 O -0.459 6.459 10 C -0.581 4.581 11 H 0.092 0.908 12 C -0.132 4.132 13 N -0.396 5.396 14 Si 0.733 3.267 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.188 1.188 18 C -0.038 4.038 19 C -0.030 4.030 20 O -0.298 6.298 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.101 0.899 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.511 -5.774 5.856 11.835 hybrid contribution 0.859 0.108 -0.012 0.866 sum -7.652 -5.666 5.844 11.172 Atomic orbital electron populations 1.22715 0.81536 1.02481 0.99784 1.87946 1.19181 1.27789 1.95374 1.22512 0.92092 0.84932 1.00885 1.22471 0.91983 0.95257 0.88103 0.91551 1.21650 0.84035 0.94223 1.02843 1.48273 1.03694 1.59669 1.26678 1.18294 0.86466 0.78593 0.79991 1.90591 1.78935 1.42535 1.33805 1.20944 0.89478 1.40687 1.06952 0.90828 1.25737 1.00413 0.92847 0.94252 1.70007 1.35817 1.27394 1.06383 0.86353 0.82511 0.78528 0.79303 1.19669 1.20376 1.18799 1.22039 1.00809 0.91871 0.89055 1.22940 0.81100 0.97138 1.01815 1.87878 1.22727 1.81665 1.37514 0.94213 0.94235 0.89861 0.92448 0.91649 0.93073 0.88923 0.91971 0.88010 0.93165 0.88771 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.83 10.67 -39.66 -0.42 -6.25 16 3 C 0.07 1.07 5.61 37.16 0.21 1.28 16 4 C 0.08 1.45 3.06 -26.58 -0.08 1.37 16 5 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 6 C 0.10 1.96 5.91 -3.54 -0.02 1.94 16 7 N -0.64 -15.01 3.03 -174.20 -0.53 -15.54 16 8 C 0.56 15.99 7.63 -12.99 -0.10 15.90 16 9 O -0.58 -18.60 14.55 5.20 0.08 -18.52 16 10 C -0.54 -15.11 8.86 -35.63 -0.32 -15.43 16 11 H 0.07 1.85 5.72 -52.48 -0.30 1.55 16 12 C 0.09 2.41 5.50 -17.36 -0.10 2.31 16 13 N -0.77 -22.76 11.85 55.55 0.66 -22.11 16 14 Si 0.91 19.77 29.56 -169.99 -5.02 14.74 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 18 C 0.09 1.65 6.52 -3.75 -0.02 1.63 16 19 C 0.05 0.80 6.97 37.09 0.26 1.06 16 20 O -0.38 -6.89 10.36 -39.66 -0.41 -7.31 16 21 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.09 2.01 7.11 -51.93 -0.37 1.64 16 28 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 29 H 0.10 1.96 5.41 -51.93 -0.28 1.67 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 270.35 15.07 4.07 4.07 Total: -1.00 -34.54 270.35 -4.95 -39.49 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.31 Total: -0.09 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 0.94 Total: 11.50 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.13 Total: -37.64 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.76 Total: -32.08 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.54 -4.95 -39.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613972738.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.920 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds