Wall clock time and date at job start Sun Mar 29 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30624 * 125.97067 * 2 1 4 4 N 1.39996 * 108.56698 * 180.27535 * 3 2 1 5 5 H 0.97003 * 125.86471 * 179.77358 * 4 3 2 6 6 C 1.34665 * 108.26929 * 359.73393 * 4 3 2 7 7 C 1.36596 * 107.60392 * 0.02562 * 6 4 3 8 8 C 1.48259 * 126.25429 * 179.97438 * 7 6 4 9 9 C 1.39978 * 119.60968 * 354.53096 * 8 7 6 10 10 C 1.38636 * 119.46388 * 179.97438 * 9 8 7 11 11 C 1.38344 * 118.69694 * 359.74424 * 10 9 8 12 12 C 1.40643 * 119.19347 * 0.51792 * 11 10 9 13 13 C 1.41353 * 119.76647 * 179.75090 * 12 11 10 14 14 H 1.07999 * 119.99908 * 206.87661 * 13 12 11 15 15 C 1.40012 * 120.00150 * 26.86675 * 13 12 11 16 16 N 1.30741 * 120.00639 * 196.84383 * 15 13 12 17 17 Si 1.86802 * 119.99467 * 16.57535 * 15 13 12 18 18 H 1.48506 * 109.47120 * 265.19065 * 17 15 13 19 19 H 1.48503 * 109.47562 * 25.19030 * 17 15 13 20 20 H 1.48501 * 109.47272 * 145.19120 * 17 15 13 21 21 N 1.32225 * 119.61378 * 174.54337 * 8 7 6 22 22 H 1.08999 * 109.47202 * 264.57484 * 1 2 3 23 23 H 1.08999 * 109.47280 * 24.57795 * 1 2 3 24 24 H 1.08998 * 109.46791 * 144.57378 * 1 2 3 25 25 H 1.08000 * 126.20128 * 180.02562 * 6 4 3 26 26 H 1.08000 * 120.26482 * 0.02562 * 9 8 7 27 27 H 1.08001 * 120.65243 * 180.02562 * 10 9 8 28 28 H 1.07998 * 120.40387 * 180.26277 * 11 10 9 29 29 H 0.96993 * 120.00625 * 179.73041 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0572 0.0000 4 7 3.6101 0.6384 -0.0064 5 1 4.3875 1.2186 -0.0109 6 6 3.6304 -0.7081 -0.0043 7 6 2.3349 -1.1408 0.0026 8 6 1.8820 -2.5525 0.0065 9 6 2.8238 -3.5813 -0.1129 10 6 2.3970 -4.9003 -0.1084 11 6 1.0444 -5.1605 0.0204 12 6 0.1463 -4.0838 0.1312 13 6 -1.2389 -4.3357 0.2580 14 1 -1.9545 -3.6014 -0.0815 15 6 -1.6832 -5.5370 0.8234 16 7 -2.9201 -5.9232 0.6500 17 14 -0.5064 -6.5917 1.8195 18 1 0.0895 -7.6317 0.9427 19 1 0.5725 -5.7376 2.3779 20 1 -1.2455 -7.2445 2.9299 21 7 0.5934 -2.8251 0.1226 22 1 -0.3633 -0.0972 1.0230 23 1 -0.3634 0.9345 -0.4274 24 1 -0.3633 -0.8374 -0.5957 25 1 4.5115 -1.3327 -0.0076 26 1 3.8743 -3.3492 -0.2070 27 1 3.1071 -5.7090 -0.1989 28 1 0.6821 -6.1778 0.0315 29 1 -3.2268 -6.7574 1.0384 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240516136.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:59 Heat of formation + Delta-G solvation = 95.507520 kcal Electronic energy + Delta-G solvation = -15020.257232 eV Core-core repulsion = 12523.453546 eV Total energy + Delta-G solvation = -2496.803687 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.84733 -38.34241 -33.87746 -32.66209 -31.47572 -31.01057 -28.71201 -27.39881 -25.45830 -22.91910 -21.27547 -20.24485 -19.22741 -17.91997 -17.05555 -15.89722 -14.75532 -14.58440 -14.50867 -13.97534 -13.63636 -12.90040 -12.55206 -12.36565 -12.20792 -12.02585 -11.81854 -11.48541 -11.22491 -10.82643 -10.47650 -10.16185 -9.92411 -9.39534 -9.01983 -8.90849 -8.38815 -7.90181 -7.21721 -7.00966 -4.63963 1.87568 2.44113 2.57701 3.05180 3.12375 3.19013 3.25615 3.46988 3.92418 4.53734 4.97546 5.09711 5.55227 5.64619 5.70124 5.80077 6.08708 6.23445 6.32515 6.38994 6.43264 6.62433 6.69241 6.89910 7.08702 7.14862 7.43973 7.47304 7.52609 7.78985 8.01921 8.28736 8.45219 8.69394 9.63266 10.00836 Molecular weight = 229.09amu Principal moments of inertia in cm(-1) A = 0.039045 B = 0.008035 C = 0.006949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.941876 B = 3484.046835 C = 4028.634837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.117 3.883 3 N -0.314 5.314 4 N -0.483 5.483 5 H 0.436 0.564 6 C 0.068 3.932 7 C -0.174 4.174 8 C 0.235 3.765 9 C -0.296 4.296 10 C -0.043 4.043 11 C -0.290 4.290 12 C 0.261 3.739 13 C -0.418 4.418 14 H 0.099 0.901 15 C 0.087 3.913 16 N -0.798 5.798 17 Si 0.917 3.083 18 H -0.270 1.270 19 H -0.246 1.246 20 H -0.291 1.291 21 N -0.536 5.536 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.101 0.899 25 H 0.177 0.823 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.911 4.713 0.089 10.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.051 4.051 3 N -0.138 5.138 4 N -0.190 5.190 5 H 0.279 0.721 6 C -0.081 4.081 7 C -0.186 4.186 8 C 0.091 3.909 9 C -0.319 4.319 10 C -0.067 4.067 11 C -0.312 4.312 12 C 0.136 3.864 13 C -0.449 4.449 14 H 0.117 0.883 15 C -0.134 4.134 16 N -0.422 5.422 17 Si 0.744 3.256 18 H -0.197 1.197 19 H -0.170 1.170 20 H -0.219 1.219 21 N -0.250 5.250 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.119 0.881 25 H 0.194 0.806 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.030 6.453 0.187 11.100 hybrid contribution 1.658 -2.041 0.357 2.654 sum 10.689 4.411 0.544 11.576 Atomic orbital electron populations 1.20258 0.85690 1.02761 1.03873 1.22615 0.97521 0.89229 0.95693 1.77114 0.86515 1.22846 1.27343 1.45971 1.07360 1.05208 1.60441 0.72114 1.22498 0.99143 0.85089 1.01364 1.18821 0.91140 0.93157 1.15483 1.18756 0.90011 0.89250 0.92920 1.21105 0.98135 0.93041 1.19668 1.20847 0.95078 0.95588 0.95221 1.21844 0.94298 0.99323 1.15754 1.18515 0.93596 0.86274 0.88035 1.19215 0.90386 1.01652 1.33675 0.88271 1.26099 0.95797 0.96714 0.94786 1.69606 1.17285 1.20956 1.34403 0.86269 0.80571 0.79723 0.79028 1.19701 1.16979 1.21891 1.68195 1.13767 1.22061 1.20977 0.90439 0.92528 0.88083 0.80620 0.88169 0.87920 0.87586 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 9.62 36.00 0.35 -0.86 15 2 C 0.12 2.21 7.25 -82.08 -0.60 1.61 15 3 N -0.31 -5.44 12.66 33.85 0.43 -5.01 15 4 N -0.48 -6.58 7.32 30.64 0.22 -6.36 15 5 H 0.44 4.02 8.96 -182.67 -1.64 2.38 15 6 C 0.07 1.00 11.37 -16.90 -0.19 0.81 15 7 C -0.17 -3.33 6.06 -105.34 -0.64 -3.97 15 8 C 0.24 5.20 6.76 -82.93 -0.56 4.64 15 9 C -0.30 -6.06 9.62 -38.78 -0.37 -6.43 15 10 C -0.04 -0.92 10.15 -39.40 -0.40 -1.32 15 11 C -0.29 -6.98 7.07 -38.64 -0.27 -7.25 15 12 C 0.26 6.78 6.04 -85.01 -0.51 6.26 15 13 C -0.42 -11.31 9.81 -37.73 -0.37 -11.68 15 14 H 0.10 2.83 8.06 -52.49 -0.42 2.41 15 15 C 0.09 2.25 5.44 -17.35 -0.09 2.15 15 16 N -0.80 -20.74 13.92 55.55 0.77 -19.97 15 17 Si 0.92 20.54 24.38 -169.99 -4.14 16.40 15 18 H -0.27 -5.82 6.67 56.52 0.38 -5.44 15 19 H -0.25 -5.75 6.68 56.52 0.38 -5.37 15 20 H -0.29 -6.27 7.11 56.52 0.40 -5.87 15 21 N -0.54 -13.26 7.96 -7.68 -0.06 -13.32 15 22 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 23 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 24 H 0.10 2.01 6.77 -51.93 -0.35 1.66 15 25 H 0.18 1.93 7.28 -52.49 -0.38 1.55 15 26 H 0.10 1.68 7.01 -52.49 -0.37 1.31 15 27 H 0.10 1.84 8.06 -52.49 -0.42 1.41 15 28 H 0.11 2.50 4.16 -52.49 -0.22 2.29 15 29 H 0.29 6.73 8.29 -40.82 -0.34 6.39 15 LS Contribution 250.77 15.07 3.78 3.78 Total: -1.00 -29.89 250.77 -6.50 -36.38 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.83 Total: 4.13 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -3.66 Total: -16.03 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 1.37 Total: -44.66 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.14 Total: 16.40 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.89 -6.50 -36.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240516136.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.890 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds