Wall clock time and date at job start Sun Mar 29 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30624 * 125.97067 * 2 1 4 4 N 1.39996 * 108.56698 * 180.27535 * 3 2 1 5 5 H 0.97003 * 125.86471 * 179.77358 * 4 3 2 6 6 C 1.34665 * 108.26929 * 359.73393 * 4 3 2 7 7 C 1.36596 * 107.60392 * 0.02562 * 6 4 3 8 8 C 1.48259 * 126.25429 * 179.97438 * 7 6 4 9 9 C 1.39978 * 119.60968 * 354.53096 * 8 7 6 10 10 C 1.38636 * 119.46388 * 179.97438 * 9 8 7 11 11 C 1.38344 * 118.69694 * 359.74424 * 10 9 8 12 12 C 1.40643 * 119.19347 * 0.51792 * 11 10 9 13 13 C 1.41353 * 119.76647 * 179.75090 * 12 11 10 14 14 H 1.07999 * 119.99908 * 206.87661 * 13 12 11 15 15 C 1.40012 * 120.00150 * 26.86675 * 13 12 11 16 16 N 1.30741 * 120.00639 * 196.84383 * 15 13 12 17 17 Si 1.86802 * 119.99467 * 16.57535 * 15 13 12 18 18 H 1.48506 * 109.47120 * 265.19065 * 17 15 13 19 19 H 1.48503 * 109.47562 * 25.19030 * 17 15 13 20 20 H 1.48501 * 109.47272 * 145.19120 * 17 15 13 21 21 N 1.32225 * 119.61378 * 174.54337 * 8 7 6 22 22 H 1.08999 * 109.47202 * 264.57484 * 1 2 3 23 23 H 1.08999 * 109.47280 * 24.57795 * 1 2 3 24 24 H 1.08998 * 109.46791 * 144.57378 * 1 2 3 25 25 H 1.08000 * 126.20128 * 180.02562 * 6 4 3 26 26 H 1.08000 * 120.26482 * 0.02562 * 9 8 7 27 27 H 1.08001 * 120.65243 * 180.02562 * 10 9 8 28 28 H 1.07998 * 120.40387 * 180.26277 * 11 10 9 29 29 H 0.96993 * 120.00625 * 179.73041 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0572 0.0000 4 7 3.6101 0.6384 -0.0064 5 1 4.3875 1.2186 -0.0109 6 6 3.6304 -0.7081 -0.0043 7 6 2.3349 -1.1408 0.0026 8 6 1.8820 -2.5525 0.0065 9 6 2.8238 -3.5813 -0.1129 10 6 2.3970 -4.9003 -0.1084 11 6 1.0444 -5.1605 0.0204 12 6 0.1463 -4.0838 0.1312 13 6 -1.2389 -4.3357 0.2580 14 1 -1.9545 -3.6014 -0.0815 15 6 -1.6832 -5.5370 0.8234 16 7 -2.9201 -5.9232 0.6500 17 14 -0.5064 -6.5917 1.8195 18 1 0.0895 -7.6317 0.9427 19 1 0.5725 -5.7376 2.3779 20 1 -1.2455 -7.2445 2.9299 21 7 0.5934 -2.8251 0.1226 22 1 -0.3633 -0.0972 1.0230 23 1 -0.3634 0.9345 -0.4274 24 1 -0.3633 -0.8374 -0.5957 25 1 4.5115 -1.3327 -0.0076 26 1 3.8743 -3.3492 -0.2070 27 1 3.1071 -5.7090 -0.1989 28 1 0.6821 -6.1778 0.0315 29 1 -3.2268 -6.7574 1.0384 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240516136.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:59 Heat of formation + Delta-G solvation = 74.558767 kcal Electronic energy + Delta-G solvation = -15021.165638 eV Core-core repulsion = 12523.453546 eV Total energy + Delta-G solvation = -2497.712093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.15968 -40.08656 -35.72817 -34.07117 -33.10025 -32.71454 -30.27462 -28.80548 -27.24310 -24.48485 -23.00329 -21.74505 -20.62547 -19.44142 -18.63728 -17.66630 -16.51479 -16.18888 -15.91240 -15.58562 -14.99895 -14.69350 -14.33250 -13.90068 -13.62618 -13.60057 -13.39959 -13.08961 -12.82165 -12.58595 -12.28769 -11.73393 -11.59316 -11.18819 -10.51648 -10.31056 -10.11584 -9.65200 -8.91142 -8.79656 -6.61355 0.39900 0.81848 1.03764 1.25766 1.43335 1.48300 1.91292 2.02755 2.12638 2.69615 3.53148 3.74208 3.92982 4.20105 4.26838 4.44951 4.55671 4.69387 4.71134 4.88014 4.95439 5.03118 5.17972 5.24375 5.35315 5.60487 5.72219 5.77321 6.02219 6.26873 6.47832 6.55054 6.73926 6.78178 7.85797 8.17723 Molecular weight = 229.09amu Principal moments of inertia in cm(-1) A = 0.039045 B = 0.008035 C = 0.006949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.941876 B = 3484.046835 C = 4028.634837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.097 3.903 3 N -0.329 5.329 4 N -0.458 5.458 5 H 0.459 0.541 6 C 0.111 3.889 7 C -0.226 4.226 8 C 0.220 3.780 9 C -0.278 4.278 10 C -0.043 4.043 11 C -0.313 4.313 12 C 0.246 3.754 13 C -0.461 4.461 14 H 0.056 0.944 15 C 0.053 3.947 16 N -0.839 5.839 17 Si 0.976 3.024 18 H -0.251 1.251 19 H -0.260 1.260 20 H -0.278 1.278 21 N -0.563 5.563 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.227 0.773 26 H 0.151 0.849 27 H 0.146 0.854 28 H 0.107 0.893 29 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.453 4.710 0.327 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.070 4.070 3 N -0.154 5.154 4 N -0.166 5.166 5 H 0.307 0.693 6 C -0.040 4.040 7 C -0.238 4.238 8 C 0.077 3.923 9 C -0.300 4.300 10 C -0.067 4.067 11 C -0.335 4.335 12 C 0.119 3.881 13 C -0.494 4.494 14 H 0.075 0.925 15 C -0.164 4.164 16 N -0.466 5.466 17 Si 0.800 3.200 18 H -0.177 1.177 19 H -0.185 1.185 20 H -0.205 1.205 21 N -0.278 5.278 22 H 0.087 0.913 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.243 0.757 26 H 0.169 0.831 27 H 0.164 0.836 28 H 0.125 0.875 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.593 6.496 0.412 15.071 hybrid contribution 0.509 -1.778 0.206 1.860 sum 14.102 4.718 0.618 14.883 Atomic orbital electron populations 1.20094 0.86536 1.02490 1.02904 1.22629 0.97647 0.90036 0.96681 1.77064 0.88004 1.22477 1.27810 1.46037 1.07035 1.05602 1.57969 0.69337 1.23063 0.98785 0.85387 0.96776 1.18920 0.93265 0.91784 1.19861 1.19378 0.89403 0.91588 0.91911 1.21698 1.00269 0.92115 1.15913 1.21364 0.94445 0.97448 0.93418 1.21937 0.95673 0.98707 1.17151 1.18601 0.93461 0.87581 0.88422 1.19155 0.90861 1.02199 1.37169 0.92530 1.26764 0.97245 0.97313 0.95098 1.69632 1.18682 1.22168 1.36107 0.85370 0.78313 0.78280 0.78055 1.17658 1.18455 1.20484 1.68180 1.16008 1.21872 1.21734 0.91327 0.90647 0.90920 0.75682 0.83116 0.83587 0.87537 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.31 9.62 71.24 0.68 -1.62 15 2 C 0.10 3.57 7.25 43.40 0.31 3.89 15 3 N -0.33 -10.61 12.66 -46.81 -0.59 -11.20 15 4 N -0.46 -10.35 7.32 -56.98 -0.42 -10.76 15 5 H 0.46 5.97 8.96 -213.38 -1.91 4.06 15 6 C 0.11 2.67 11.37 83.87 0.95 3.62 15 7 C -0.23 -8.08 6.06 -20.33 -0.12 -8.21 15 8 C 0.22 9.39 6.76 42.17 0.29 9.67 15 9 C -0.28 -10.11 9.62 22.79 0.22 -9.89 15 10 C -0.04 -1.65 10.15 22.39 0.23 -1.42 15 11 C -0.31 -14.80 7.07 22.88 0.16 -14.63 15 12 C 0.25 13.19 6.04 40.23 0.24 13.43 15 13 C -0.46 -26.86 9.81 23.47 0.23 -26.63 15 14 H 0.06 3.60 8.06 -2.91 -0.02 3.58 15 15 C 0.05 2.84 5.44 85.29 0.46 3.30 15 16 N -0.84 -45.96 13.92 21.83 0.30 -45.66 15 17 Si 0.98 42.86 24.38 68.60 1.67 44.53 15 18 H -0.25 -10.14 6.67 99.48 0.66 -9.47 15 19 H -0.26 -11.88 6.68 99.48 0.66 -11.22 15 20 H -0.28 -11.41 7.11 99.48 0.71 -10.70 15 21 N -0.56 -28.66 7.96 -178.20 -1.42 -30.08 15 22 H 0.07 2.61 8.14 -2.39 -0.02 2.59 15 23 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15 24 H 0.07 3.13 6.77 -2.39 -0.02 3.11 15 25 H 0.23 3.06 7.28 -2.91 -0.02 3.04 15 26 H 0.15 3.90 7.01 -2.91 -0.02 3.88 15 27 H 0.15 4.36 8.06 -2.91 -0.02 4.34 15 28 H 0.11 4.93 4.16 -2.91 -0.01 4.92 15 29 H 0.30 14.46 8.29 -92.71 -0.77 13.69 15 Total: -1.00 -69.84 250.77 2.41 -67.43 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -0.80 Total: 14.23 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 3.66 Total: -28.49 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -2.12 Total: -97.70 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.67 Total: 44.53 kcal Total: -69.84 2.41 -67.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240516136.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.993 kcal (2) G-P(sol) polarization free energy of solvation -69.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds