Wall clock time and date at job start Sun Mar 29 2020 22:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30533 * 125.94809 * 2 1 4 4 N 1.39951 * 108.86094 * 179.97438 * 3 2 1 5 5 H 0.97001 * 125.80179 * 179.97438 * 4 3 2 6 6 C 1.34616 * 108.39774 * 359.97438 * 4 3 2 7 7 C 1.37911 * 107.39093 * 0.02562 * 6 4 3 8 8 C 1.47912 * 126.37455 * 179.73803 * 7 6 4 9 9 C 1.39955 * 119.45365 * 359.74616 * 8 7 6 10 10 C 1.36551 * 119.46424 * 179.76395 * 9 8 7 11 11 C 1.41333 * 118.42163 * 0.50428 * 10 9 8 12 12 C 1.41058 * 120.54503 * 179.76907 * 11 10 9 13 13 H 1.08005 * 119.99853 * 155.65271 * 12 11 10 14 14 C 1.39952 * 120.00184 * 335.64043 * 12 11 10 15 15 N 1.30840 * 120.00017 * 343.21098 * 14 12 11 16 16 Si 1.86805 * 120.00021 * 163.20763 * 14 12 11 17 17 H 1.48503 * 109.46994 * 60.00316 * 16 14 12 18 18 H 1.48495 * 109.47053 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47020 * 300.00640 * 16 14 12 20 20 C 1.40911 * 118.90485 * 359.73988 * 11 10 9 21 21 N 1.31299 * 120.40154 * 0.02562 * 20 11 10 22 22 H 1.08997 * 109.47778 * 270.02893 * 1 2 3 23 23 H 1.09003 * 109.47179 * 30.03156 * 1 2 3 24 24 H 1.09005 * 109.47043 * 150.03143 * 1 2 3 25 25 H 1.07994 * 126.30133 * 180.02562 * 6 4 3 26 26 H 1.07999 * 120.27298 * 0.02732 * 9 8 7 27 27 H 1.07996 * 120.78972 * 180.24298 * 10 9 8 28 28 H 0.96998 * 119.99922 * 179.97438 * 15 14 12 29 29 H 1.07997 * 119.79920 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0567 0.0000 4 7 3.6110 0.6455 0.0006 5 1 4.3846 1.2308 0.0004 6 6 3.6418 -0.7003 0.0015 7 6 2.3355 -1.1425 0.0009 8 6 1.8865 -2.5518 -0.0038 9 6 2.8387 -3.5774 -0.0137 10 6 2.4244 -4.8786 -0.0133 11 6 1.0359 -5.1425 -0.0136 12 6 0.5585 -6.4698 -0.0181 13 1 -0.4260 -6.6908 0.3672 14 6 1.3603 -7.5002 -0.5219 15 7 2.3909 -7.2177 -1.2769 16 14 0.9593 -9.2791 -0.1164 17 1 -0.4005 -9.6061 -0.6154 18 1 1.9532 -10.1710 -0.7658 19 1 1.0068 -9.4742 1.3550 20 6 0.1365 -4.0578 -0.0089 21 7 0.5841 -2.8234 -0.0047 22 1 -0.3634 0.0005 1.0276 23 1 -0.3634 0.8897 -0.5143 24 1 -0.3633 -0.8903 -0.5134 25 1 4.5265 -1.3196 0.0025 26 1 3.8927 -3.3418 -0.0174 27 1 3.1407 -5.6868 -0.0169 28 1 2.9469 -7.9319 -1.6258 29 1 -0.9275 -4.2428 -0.0095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240517543.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:08 Heat of formation + Delta-G solvation = 70.163641 kcal Electronic energy + Delta-G solvation = -14796.876961 eV Core-core repulsion = 12298.974281 eV Total energy + Delta-G solvation = -2497.902680 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.091 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.95819 -39.91127 -35.99666 -33.84570 -32.79087 -32.34075 -30.15104 -28.69058 -27.02566 -23.72908 -23.59874 -21.48077 -20.48518 -19.24815 -18.85612 -17.11607 -16.58701 -15.97508 -15.80003 -15.51499 -14.87489 -14.24576 -14.09953 -13.77434 -13.55640 -13.41021 -13.35201 -13.01766 -12.83489 -12.66755 -12.25615 -11.75835 -11.45652 -11.19482 -10.27328 -10.22543 -10.11064 -9.76075 -8.83168 -8.59834 -6.31566 0.54991 1.05168 1.17025 1.41370 1.48294 1.53565 2.04749 2.10188 2.20779 2.86071 3.71069 3.85695 4.00146 4.31084 4.46602 4.54545 4.65014 4.86994 4.92705 5.02413 5.09987 5.18389 5.24812 5.31310 5.45253 5.67554 5.93286 6.06292 6.10439 6.53680 6.56479 6.78321 6.83591 6.85794 7.80610 8.25933 Molecular weight = 229.09amu Principal moments of inertia in cm(-1) A = 0.057249 B = 0.006118 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.970125 B = 4575.843801 C = 4988.127611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.083 3.917 3 N -0.331 5.331 4 N -0.460 5.460 5 H 0.455 0.545 6 C 0.069 3.931 7 C -0.188 4.188 8 C 0.053 3.947 9 C -0.138 4.138 10 C -0.154 4.154 11 C 0.035 3.965 12 C -0.478 4.478 13 H 0.085 0.915 14 C 0.036 3.964 15 N -0.817 5.817 16 Si 0.986 3.014 17 H -0.258 1.258 18 H -0.268 1.268 19 H -0.260 1.260 20 C -0.036 4.036 21 N -0.462 5.462 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.210 0.790 26 H 0.129 0.871 27 H 0.116 0.884 28 H 0.292 0.708 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 5.143 1.691 6.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.083 4.083 3 N -0.156 5.156 4 N -0.169 5.169 5 H 0.302 0.698 6 C -0.082 4.082 7 C -0.200 4.200 8 C -0.085 4.085 9 C -0.158 4.158 10 C -0.180 4.180 11 C 0.030 3.970 12 C -0.507 4.507 13 H 0.103 0.897 14 C -0.181 4.181 15 N -0.442 5.442 16 Si 0.807 3.193 17 H -0.183 1.183 18 H -0.192 1.192 19 H -0.184 1.184 20 C -0.197 4.197 21 N -0.170 5.170 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.227 0.773 26 H 0.147 0.853 27 H 0.134 0.866 28 H 0.103 0.897 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.527 6.999 1.537 7.987 hybrid contribution 0.908 -2.198 -0.016 2.378 sum 4.436 4.801 1.521 6.711 Atomic orbital electron populations 1.20219 0.85920 1.03343 1.02950 1.22696 0.97956 0.89660 0.98009 1.76878 0.87877 1.22979 1.27881 1.45861 1.06936 1.05378 1.58725 0.69769 1.23164 0.98855 0.85396 1.00736 1.19057 0.92601 0.91864 1.16508 1.18586 0.88694 0.90803 1.10419 1.21487 0.99562 0.93033 1.01733 1.21365 0.96166 0.95802 1.04623 1.18857 0.93090 0.94801 0.90217 1.19797 1.02969 0.91903 1.36055 0.89654 1.26827 0.93479 1.06131 0.91614 1.69833 1.14426 1.37497 1.22446 0.85178 0.79404 0.75049 0.79708 1.18258 1.19204 1.18416 1.22641 0.98798 0.87522 1.10782 1.66988 1.16297 1.22989 1.10723 0.90850 0.90753 0.89774 0.77311 0.85347 0.86580 0.89694 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.25 9.85 71.24 0.70 -1.54 15 2 C 0.08 3.11 7.26 43.46 0.32 3.42 15 3 N -0.33 -11.25 12.64 -46.74 -0.59 -11.84 15 4 N -0.46 -12.14 7.31 -56.20 -0.41 -12.55 15 5 H 0.46 7.74 8.96 -213.41 -1.91 5.83 15 6 C 0.07 2.01 11.43 84.19 0.96 2.97 15 7 C -0.19 -7.34 6.10 -20.08 -0.12 -7.46 15 8 C 0.05 2.40 6.76 41.94 0.28 2.68 15 9 C -0.14 -6.20 9.53 22.29 0.21 -5.99 15 10 C -0.15 -7.79 8.74 22.64 0.20 -7.59 15 11 C 0.03 1.83 5.59 -21.17 -0.12 1.71 15 12 C -0.48 -24.52 9.06 23.38 0.21 -24.31 15 13 H 0.09 4.16 7.90 -2.91 -0.02 4.13 15 14 C 0.04 1.71 5.18 85.26 0.44 2.15 15 15 N -0.82 -40.36 10.91 21.83 0.24 -40.12 15 16 Si 0.99 35.91 29.59 68.60 2.03 37.94 15 17 H -0.26 -9.14 7.11 99.48 0.71 -8.43 15 18 H -0.27 -9.22 7.11 99.48 0.71 -8.52 15 19 H -0.26 -9.29 7.11 99.48 0.71 -8.58 15 20 C -0.04 -1.79 10.97 85.43 0.94 -0.85 15 21 N -0.46 -22.30 7.76 -182.71 -1.42 -23.72 15 22 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 23 H 0.07 2.18 8.14 -2.39 -0.02 2.17 15 24 H 0.08 3.21 6.27 -2.38 -0.01 3.19 15 25 H 0.21 4.45 7.27 -2.91 -0.02 4.43 15 26 H 0.13 4.72 6.98 -2.91 -0.02 4.70 15 27 H 0.12 5.99 6.20 -2.91 -0.02 5.97 15 28 H 0.29 12.98 8.30 -92.71 -0.77 12.21 15 29 H 0.14 6.31 8.06 -2.91 -0.02 6.28 15 Total: -1.00 -62.50 256.23 3.15 -59.35 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -0.72 Total: 25.75 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 4.02 Total: -34.80 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -2.18 Total: -88.23 kcal Atomic # 14 Polarization: 35.91 SS G_CDS: 2.03 Total: 37.94 kcal Total: -62.50 3.15 -59.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240517543.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.514 kcal (2) G-P(sol) polarization free energy of solvation -62.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds