Wall clock time and date at job start Sun Mar 29 2020 22:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86795 * 120.00364 * 2 1 4 4 H 1.48504 * 109.47264 * 269.99821 * 3 2 1 5 5 H 1.48498 * 109.47062 * 29.99996 * 3 2 1 6 6 H 1.48504 * 109.47021 * 149.99799 * 3 2 1 7 7 C 1.39912 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00386 * 162.71404 * 7 2 1 9 9 C 1.41436 * 120.00030 * 342.71251 * 7 2 1 10 10 C 1.40844 * 120.17164 * 155.08817 * 9 7 2 11 11 C 1.37726 * 120.05657 * 180.29292 * 10 9 7 12 12 C 1.38348 * 120.41372 * 359.45429 * 11 10 9 13 13 C 1.40029 * 120.34247 * 0.27644 * 12 11 10 14 14 C 1.47544 * 120.03396 * 179.97438 * 13 12 11 15 15 C 1.32881 * 118.66676 * 114.73129 * 14 13 12 16 16 N 1.38317 * 121.69776 * 180.08730 * 15 14 13 17 17 C 1.47006 * 118.97280 * 347.04235 * 16 15 14 18 18 C 1.53512 * 107.75041 * 43.78223 * 17 16 15 19 19 C 1.50238 * 118.66270 * 294.99430 * 14 13 12 20 20 C 1.39100 * 119.93202 * 359.97438 * 13 12 11 21 21 H 0.97006 * 119.99280 * 359.97438 * 1 2 3 22 22 H 1.07996 * 119.96743 * 0.02562 * 10 9 7 23 23 H 1.07997 * 119.79161 * 179.72791 * 11 10 9 24 24 H 1.08002 * 119.82641 * 180.25437 * 12 11 10 25 25 H 1.08005 * 119.15383 * 0.36963 * 15 14 13 26 26 H 0.96998 * 120.48903 * 166.78889 * 16 15 14 27 27 H 1.08997 * 109.80193 * 284.21926 * 17 16 15 28 28 H 1.09004 * 109.80397 * 163.34794 * 17 16 15 29 29 H 1.08996 * 109.61511 * 178.91650 * 18 17 16 30 30 H 1.09000 * 109.75735 * 58.47799 * 18 17 16 31 31 H 1.08999 * 109.33889 * 280.30953 * 19 14 13 32 32 H 1.09007 * 109.33749 * 39.81511 * 19 14 13 33 33 H 1.08000 * 120.20532 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4900 2.0463 -1.4001 5 1 1.4399 2.6526 0.7000 6 1 3.5400 1.4400 0.7001 7 6 2.0079 -1.2117 -0.0005 8 1 3.0513 -1.2328 -0.2785 9 6 1.3485 -2.4090 0.3629 10 6 1.8213 -3.6489 -0.1093 11 6 1.1739 -4.8129 0.2412 12 6 0.0641 -4.7758 1.0664 13 6 -0.4172 -3.5530 1.5502 14 6 -1.6016 -3.5213 2.4294 15 6 -1.4532 -3.1105 3.6844 16 7 -2.5203 -3.0576 4.5628 17 6 -3.8856 -3.1852 4.0332 18 6 -3.8845 -4.3263 3.0062 19 6 -2.9254 -3.9606 1.8711 20 6 0.2226 -2.3682 1.2011 21 1 -0.4849 0.8402 0.0004 22 1 2.6897 -3.6865 -0.7502 23 1 1.5375 -5.7608 -0.1269 24 1 -0.4339 -5.6947 1.3386 25 1 -0.4749 -2.8057 4.0260 26 1 -2.3694 -2.9418 5.5140 27 1 -4.1830 -2.2543 3.5505 28 1 -4.5759 -3.4186 4.8439 29 1 -4.8898 -4.4603 2.6070 30 1 -3.5536 -5.2496 3.4817 31 1 -3.3555 -3.1506 1.2821 32 1 -2.7764 -4.8298 1.2303 33 1 -0.1450 -1.4227 1.5713 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243953040.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:20 Heat of formation + Delta-G solvation = 5.266191 kcal Electronic energy + Delta-G solvation = -15285.755364 eV Core-core repulsion = 12888.578863 eV Total energy + Delta-G solvation = -2397.176501 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.00239 -38.66096 -35.55320 -33.60930 -32.73384 -31.37039 -29.51538 -27.10047 -25.31967 -23.97497 -22.60381 -21.90507 -19.43264 -18.52550 -18.05852 -16.98533 -16.41333 -15.65245 -15.54043 -15.20673 -14.89273 -14.40616 -14.10961 -13.96589 -13.61537 -13.43805 -13.03340 -12.78115 -12.67402 -12.41568 -12.16296 -11.89257 -11.60739 -11.42383 -11.11167 -10.96110 -10.89497 -9.28574 -9.21444 -8.58328 -7.96663 -6.30656 0.95104 1.15066 1.36912 1.48628 1.54066 1.78145 2.22048 2.76645 2.86667 3.77499 4.04839 4.18798 4.21068 4.49091 4.54415 4.67340 4.79450 4.82035 4.90531 4.95442 5.03964 5.12088 5.18995 5.33855 5.39511 5.51275 5.57968 5.75502 5.90329 6.08675 6.16937 6.32848 6.43378 6.62760 6.82083 6.99862 7.10978 7.15327 8.38183 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.026019 B = 0.008097 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.889135 B = 3457.076689 C = 4194.758004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.506 4.506 8 H 0.072 0.928 9 C 0.075 3.925 10 C -0.252 4.252 11 C -0.097 4.097 12 C -0.231 4.231 13 C -0.016 4.016 14 C -0.220 4.220 15 C 0.128 3.872 16 N -0.749 5.749 17 C 0.120 3.880 18 C -0.127 4.127 19 C -0.056 4.056 20 C -0.176 4.176 21 H 0.285 0.715 22 H 0.093 0.907 23 H 0.118 0.882 24 H 0.108 0.892 25 H 0.116 0.884 26 H 0.408 0.592 27 H 0.045 0.955 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 -3.239 8.021 11.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.536 4.536 8 H 0.090 0.910 9 C 0.073 3.927 10 C -0.272 4.272 11 C -0.115 4.115 12 C -0.250 4.250 13 C -0.017 4.017 14 C -0.230 4.230 15 C 0.007 3.993 16 N -0.381 5.381 17 C -0.004 4.004 18 C -0.165 4.165 19 C -0.093 4.093 20 C -0.196 4.196 21 H 0.095 0.905 22 H 0.111 0.889 23 H 0.136 0.864 24 H 0.126 0.874 25 H 0.133 0.867 26 H 0.243 0.757 27 H 0.063 0.937 28 H 0.126 0.874 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.575 -3.087 7.944 11.402 hybrid contribution 0.744 0.846 -0.200 1.144 sum -6.831 -2.240 7.744 10.567 Atomic orbital electron populations 1.69924 1.08935 1.30162 1.36302 1.26727 0.95475 1.04381 0.91367 0.85256 0.79124 0.76109 0.79507 1.18646 1.19083 1.18302 1.19775 0.97989 0.92550 1.43258 0.90994 1.17973 0.92164 0.93031 0.89533 1.21192 1.04554 0.93398 1.08010 1.20797 0.95945 0.96982 0.97822 1.20798 1.01043 0.96228 1.06980 1.18767 0.94017 0.92633 0.96315 1.19420 0.94755 1.13849 0.94958 1.20490 0.91735 0.96302 0.90800 1.44246 1.03756 1.81813 1.08235 1.21637 0.83548 0.97395 0.97812 1.21835 0.99704 0.98675 0.96254 1.19993 0.92174 0.99447 0.97708 1.21432 0.99841 0.96200 1.02104 0.90468 0.88885 0.86400 0.87373 0.86664 0.75654 0.93685 0.87382 0.88939 0.91483 0.93900 0.92484 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.59 10.97 21.82 0.24 -45.35 16 2 C 0.03 1.84 5.14 85.25 0.44 2.27 16 3 Si 0.98 39.98 29.59 68.60 2.03 42.01 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 7 C -0.51 -28.87 9.05 23.46 0.21 -28.66 16 8 H 0.07 3.96 7.90 -2.91 -0.02 3.94 16 9 C 0.07 4.32 5.57 -21.32 -0.12 4.20 16 10 C -0.25 -13.27 9.79 22.79 0.22 -13.05 16 11 C -0.10 -4.57 10.01 22.17 0.22 -4.35 16 12 C -0.23 -10.74 9.62 22.73 0.22 -10.52 16 13 C -0.02 -0.80 5.18 -20.18 -0.10 -0.90 16 14 C -0.22 -8.97 5.29 -18.73 -0.10 -9.06 16 15 C 0.13 4.57 10.48 82.49 0.86 5.43 16 16 N -0.75 -19.67 5.80 -345.18 -2.00 -21.68 16 17 C 0.12 2.71 7.14 86.45 0.62 3.33 16 18 C -0.13 -3.12 6.17 30.78 0.19 -2.93 16 19 C -0.06 -1.95 5.83 29.71 0.17 -1.77 16 20 C -0.18 -9.80 8.32 23.01 0.19 -9.60 16 21 H 0.28 14.23 8.30 -92.70 -0.77 13.47 16 22 H 0.09 4.64 8.06 -2.91 -0.02 4.62 16 23 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 24 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 25 H 0.12 4.27 8.01 -2.91 -0.02 4.25 16 26 H 0.41 8.25 8.96 -92.71 -0.83 7.42 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.11 1.60 8.14 -2.38 -0.02 1.59 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 2.02 7.99 -2.38 -0.02 2.00 16 33 H 0.10 5.68 6.18 -2.91 -0.02 5.67 16 Total: -1.00 -64.93 277.49 3.57 -61.36 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.27 Total: 29.27 kcal Atomic # 6 Polarization: -68.65 SS G_CDS: 3.03 Total: -65.62 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -1.76 Total: -67.03 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -64.93 3.57 -61.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243953040.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.629 kcal (2) G-P(sol) polarization free energy of solvation -64.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds