Wall clock time and date at job start Sun Mar 29 2020 22:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81398 * 109.47310 * 2 1 4 4 C 1.81401 * 103.00052 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.18716 * 54.56580 * 4 3 2 6 6 C 1.47097 * 109.33079 * 174.13531 * 4 3 2 7 7 C 1.52566 * 114.32777 * 183.06371 * 6 4 3 8 8 C 1.50886 * 109.35641 * 274.98387 * 7 6 4 9 9 C 1.54296 * 110.23584 * 91.79690 * 8 7 6 10 10 N 1.47601 * 111.94224 * 319.70525 * 9 8 7 11 11 C 1.36933 * 118.64439 * 137.77970 * 10 9 8 12 12 H 1.08007 * 119.99945 * 206.69446 * 11 10 9 13 13 C 1.38809 * 120.00021 * 26.68940 * 11 10 9 14 14 N 1.31619 * 120.00149 * 17.12019 * 13 11 10 15 15 Si 1.86805 * 120.00086 * 196.84267 * 13 11 10 16 16 H 1.48498 * 109.47029 * 265.60868 * 15 13 11 17 17 H 1.48506 * 109.46675 * 25.60921 * 15 13 11 18 18 H 1.48500 * 109.47186 * 145.60368 * 15 13 11 19 19 C 1.44583 * 122.71369 * 317.49360 * 10 9 8 20 20 H 1.08994 * 109.47134 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47031 * 300.00249 * 1 2 3 22 22 H 1.09003 * 109.47093 * 59.99638 * 1 2 3 23 23 H 1.09004 * 109.47019 * 240.00214 * 2 1 3 24 24 H 1.08999 * 109.47799 * 120.00270 * 2 1 3 25 25 H 1.09007 * 108.50562 * 304.31365 * 6 4 3 26 26 H 1.08992 * 108.51331 * 61.95718 * 6 4 3 27 27 H 1.08997 * 109.49024 * 34.94906 * 7 6 4 28 28 H 1.09001 * 109.49290 * 155.02006 * 7 6 4 29 29 H 1.09000 * 109.36646 * 212.07832 * 8 7 6 30 30 H 1.09002 * 109.36622 * 331.82204 * 8 7 6 31 31 H 1.08997 * 109.13973 * 199.01241 * 9 8 7 32 32 H 1.09006 * 108.95470 * 80.26611 * 9 8 7 33 33 H 0.97000 * 120.00492 * 179.72058 * 14 13 11 34 34 H 1.08994 * 109.45272 * 211.03002 * 19 10 9 35 35 H 1.09010 * 109.44459 * 330.94910 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 -0.0008 5 1 4.2254 0.8724 -0.8398 6 6 4.5765 2.8228 -0.1427 7 6 6.0989 2.7762 -0.2309 8 6 6.6799 2.7484 1.1613 9 6 6.8824 1.2911 1.6261 10 7 5.7596 0.4223 1.2222 11 6 6.0382 -0.8275 0.7370 12 1 5.3506 -1.3085 0.0570 13 6 7.2045 -1.4762 1.1189 14 7 7.8684 -1.0666 2.1790 15 14 7.8276 -2.9352 0.1327 16 1 7.3320 -4.1942 0.7447 17 1 7.3334 -2.8358 -1.2642 18 1 9.3126 -2.9354 0.1336 19 6 4.3773 0.8341 1.3234 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 4.1920 3.2987 -1.0449 26 1 4.3003 3.4358 0.7151 27 1 6.4046 1.8799 -0.7705 28 1 6.4599 3.6593 -0.7580 29 1 7.6397 3.2649 1.1629 30 1 5.9980 3.2506 1.8477 31 1 6.9721 1.2715 2.7122 32 1 7.8035 0.9049 1.1895 33 1 8.6812 -1.5224 2.4482 34 1 3.7517 -0.0379 1.5135 35 1 4.2692 1.5437 2.1438 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306214607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:38 Heat of formation + Delta-G solvation = 1.461872 kcal Electronic energy + Delta-G solvation = -14807.885750 eV Core-core repulsion = 12545.988233 eV Total energy + Delta-G solvation = -2261.897517 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.84580 -33.77463 -32.62296 -31.71187 -30.72330 -26.24405 -24.26964 -23.76415 -22.76723 -19.88562 -19.24177 -16.66301 -16.01073 -15.13196 -14.90696 -14.46649 -14.30725 -13.66015 -13.56149 -12.95475 -12.54976 -12.45696 -11.99417 -11.71492 -11.49250 -11.27602 -11.12722 -10.87382 -10.58692 -10.45040 -10.11587 -10.02500 -9.80149 -9.75722 -9.56322 -9.33797 -8.43928 -7.35538 -6.67815 -5.82850 -3.27207 2.14002 3.03820 3.33275 3.41218 3.43255 4.46787 5.13062 5.18509 5.22550 5.36054 5.47996 5.49860 5.55370 5.78860 5.89481 5.93396 5.97319 5.98743 6.16595 6.25201 6.37452 6.44044 6.58251 6.63558 6.73593 6.81495 6.85842 7.03698 7.41625 7.66892 7.77965 8.41577 9.18753 9.85072 10.30661 11.23996 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.023963 B = 0.009607 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.185509 B = 2913.718919 C = 3727.271150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 S -0.300 6.300 4 C -0.063 4.063 5 H 0.083 0.917 6 C -0.089 4.089 7 C -0.098 4.098 8 C -0.144 4.144 9 C 0.177 3.823 10 N -0.583 5.583 11 C -0.265 4.265 12 H 0.063 0.937 13 C 0.009 3.991 14 N -0.900 5.900 15 Si 0.898 3.102 16 H -0.287 1.287 17 H -0.279 1.279 18 H -0.289 1.289 19 C 0.171 3.829 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.254 0.746 34 H 0.045 0.955 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 4.951 -3.722 10.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.231 4.231 3 S -0.073 6.073 4 C -0.195 4.195 5 H 0.101 0.899 6 C -0.128 4.128 7 C -0.138 4.138 8 C -0.183 4.183 9 C 0.052 3.948 10 N -0.304 5.304 11 C -0.394 4.394 12 H 0.080 0.920 13 C -0.191 4.191 14 N -0.543 5.543 15 Si 0.728 3.272 16 H -0.214 1.214 17 H -0.204 1.204 18 H -0.215 1.215 19 C 0.040 3.960 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.372 5.815 -3.623 10.818 hybrid contribution 1.115 -1.908 -0.534 2.274 sum -7.257 3.907 -4.157 9.231 Atomic orbital electron populations 1.21503 0.93001 1.01975 1.02659 1.23201 0.99097 0.95609 1.05209 1.86406 1.09531 1.13229 1.98126 1.23453 0.88831 1.01195 1.06004 0.89883 1.20118 0.96041 0.95299 1.01298 1.20897 0.93480 1.01380 0.97996 1.22129 0.99461 1.00559 0.96145 1.21106 0.91263 0.85250 0.97187 1.43704 0.99036 1.13192 1.74485 1.19147 1.06006 0.93129 1.21151 0.91970 1.25015 0.99867 0.97902 0.96272 1.70080 1.18653 1.42439 1.23146 0.86356 0.78170 0.82625 0.80080 1.21423 1.20428 1.21469 1.20890 0.87036 0.96526 0.91546 0.91587 0.91960 0.92168 0.90482 0.89762 0.93168 0.92468 0.90701 0.93366 0.92894 0.93533 0.95563 0.90918 0.93591 0.93646 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 9.92 37.15 0.37 -1.17 16 2 C -0.08 -1.20 6.36 37.15 0.24 -0.96 16 3 S -0.30 -4.96 21.09 -107.50 -2.27 -7.23 16 4 C -0.06 -1.17 2.53 -28.58 -0.07 -1.24 16 5 H 0.08 1.68 8.14 -51.92 -0.42 1.25 16 6 C -0.09 -1.53 4.38 -29.79 -0.13 -1.66 16 7 C -0.10 -1.74 5.51 -28.01 -0.15 -1.89 16 8 C -0.14 -2.71 5.71 -27.11 -0.15 -2.86 16 9 C 0.18 4.16 4.71 -2.76 -0.01 4.15 16 10 N -0.58 -14.20 2.26 -171.87 -0.39 -14.59 16 11 C -0.26 -7.06 9.43 -15.06 -0.14 -7.21 16 12 H 0.06 1.65 7.89 -52.48 -0.41 1.23 16 13 C 0.01 0.23 4.83 -17.43 -0.08 0.15 16 14 N -0.90 -25.66 11.12 55.49 0.62 -25.04 16 15 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 C 0.17 3.59 4.95 -4.08 -0.02 3.57 16 20 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 24 H 0.08 1.28 6.89 -51.92 -0.36 0.93 16 25 H 0.05 0.81 8.12 -51.92 -0.42 0.39 16 26 H 0.06 0.98 7.35 -51.93 -0.38 0.60 16 27 H 0.07 1.51 7.49 -51.93 -0.39 1.12 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.84 7.31 -51.93 -0.38 0.46 16 31 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 32 H 0.07 1.90 6.39 -51.93 -0.33 1.56 16 33 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.05 0.98 6.39 -51.93 -0.33 0.65 16 35 H 0.04 0.89 8.06 -51.92 -0.42 0.47 16 LS Contribution 282.93 15.07 4.26 4.26 Total: -1.00 -27.69 282.93 -8.91 -36.59 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.94 Total: -1.24 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -0.17 Total: -9.13 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.23 Total: -39.63 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -2.27 Total: -7.23 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.69 -8.91 -36.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306214607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.056 kcal (2) G-P(sol) polarization free energy of solvation -27.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds