Wall clock time and date at job start Sun Mar 29 2020 22:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.46896 * 2 1 4 4 C 1.53007 * 109.47176 * 119.99333 * 2 1 3 5 5 C 1.50699 * 109.46968 * 181.52954 * 4 2 1 6 6 H 1.07998 * 119.99941 * 5.01584 * 5 4 2 7 7 C 1.37876 * 119.99883 * 185.00758 * 5 4 2 8 8 N 1.31521 * 120.00068 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00027 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47272 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46914 * 120.00447 * 9 7 5 12 12 H 1.48502 * 109.47104 * 240.00261 * 9 7 5 13 13 N 1.46896 * 109.47539 * 239.99491 * 2 1 3 14 14 C 1.47905 * 110.99815 * 81.76418 * 13 2 1 15 15 C 1.53992 * 107.22469 * 214.25561 * 14 13 2 16 16 H 1.09000 * 110.30612 * 120.04467 * 15 14 13 17 17 O 1.42899 * 110.30852 * 242.10818 * 15 14 13 18 18 C 1.54599 * 105.14080 * 1.12674 * 15 14 13 19 19 C 1.48809 * 111.18445 * 324.42695 * 13 2 1 20 20 H 1.09004 * 110.51938 * 41.07345 * 19 13 2 21 21 C 1.52994 * 110.84315 * 278.09093 * 19 13 2 22 22 O 1.42897 * 109.47042 * 304.61571 * 21 19 13 23 23 H 1.08997 * 109.47885 * 307.84326 * 1 2 3 24 24 H 1.08995 * 109.47414 * 67.84899 * 1 2 3 25 25 H 1.09007 * 109.47121 * 187.84802 * 1 2 3 26 26 H 1.08996 * 109.46997 * 301.52991 * 4 2 1 27 27 H 1.08998 * 109.46710 * 61.53090 * 4 2 1 28 28 H 0.96993 * 119.99996 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.91861 * 94.80552 * 14 13 2 30 30 H 1.09003 * 109.91918 * 333.70661 * 14 13 2 31 31 H 0.96701 * 114.00337 * 298.54685 * 17 15 14 32 32 H 1.09002 * 110.72171 * 140.31331 * 18 15 14 33 33 H 1.09000 * 110.71971 * 263.59510 * 18 15 14 34 34 H 1.08994 * 109.47074 * 64.61788 * 21 19 13 35 35 H 1.08998 * 109.47255 * 184.61826 * 21 19 13 36 36 H 0.96705 * 114.00259 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5465 -0.6883 1.2684 6 1 4.0841 -0.1332 0.5140 7 6 4.2384 -1.3669 2.2491 8 7 3.5837 -2.0432 3.1677 9 14 6.1058 -1.3269 2.2724 10 1 6.5975 -0.5028 1.1391 11 1 6.5724 -0.7360 3.5525 12 1 6.6322 -2.7096 2.1445 13 7 2.0197 -0.6926 -1.1993 14 6 2.0099 0.2080 -2.3725 15 6 1.6716 -0.6517 -3.6045 16 1 0.7583 -0.2915 -4.0779 17 8 2.7543 -0.6300 -4.5369 18 6 1.4631 -2.0813 -3.0543 19 6 1.1350 -1.8333 -1.5605 20 1 0.0874 -1.5583 -1.4373 21 6 1.4694 -3.0684 -0.7219 22 8 2.8551 -3.3841 -0.8704 23 1 -0.3635 0.6304 0.8115 24 1 -0.3634 0.3875 -0.9518 25 1 -0.3634 -1.0181 0.1403 26 1 1.6544 -0.2233 2.1390 27 1 1.6992 -1.7564 1.2358 28 1 4.0705 -2.5208 3.8574 29 1 2.9911 0.6659 -2.4974 30 1 1.2534 0.9816 -2.2405 31 1 2.9581 0.2499 -4.8826 32 1 0.6282 -2.5699 -3.5566 33 1 2.3744 -2.6706 -3.1565 34 1 1.2536 -2.8647 0.3269 35 1 0.8665 -3.9112 -1.0598 36 1 3.1386 -4.1582 -0.3649 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593025716.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:21 Heat of formation + Delta-G solvation = -83.661951 kcal Electronic energy + Delta-G solvation = -17494.799714 eV Core-core repulsion = 14786.458080 eV Total energy + Delta-G solvation = -2708.341634 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.45961 -36.42318 -35.34583 -33.32704 -31.78719 -29.58133 -27.87110 -27.29596 -24.56197 -23.17391 -20.74850 -20.59725 -18.63472 -16.96115 -16.77668 -16.14310 -15.39992 -14.86214 -14.39425 -14.20801 -13.53066 -13.23835 -12.95837 -12.77091 -12.39805 -11.78341 -11.70279 -11.63978 -11.46612 -10.95614 -10.91830 -10.70252 -10.39840 -10.35268 -10.07439 -9.91683 -9.78546 -9.21164 -9.02504 -8.69484 -8.09853 -7.43949 -5.78549 -3.72394 3.45736 3.52809 3.60505 4.36962 4.51477 4.67429 4.91616 4.96507 5.26776 5.29313 5.58368 5.61076 5.67258 5.74829 5.75596 5.90093 5.95834 6.01250 6.05617 6.24272 6.29741 6.43008 6.44419 6.56935 6.69207 7.05137 7.53555 7.62587 7.82990 7.93524 8.06426 8.22145 8.55061 8.69192 9.30052 9.87327 11.33947 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.009458 C = 0.008903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.725807 B = 2959.843864 C = 3144.350772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.073 3.927 3 H 0.064 0.936 4 C 0.029 3.971 5 C -0.466 4.466 6 H 0.056 0.944 7 C 0.050 3.950 8 N -0.910 5.910 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.292 1.292 12 H -0.288 1.288 13 N -0.460 5.460 14 C 0.003 3.997 15 C 0.095 3.905 16 H 0.052 0.948 17 O -0.560 6.560 18 C -0.109 4.109 19 C 0.060 3.940 20 H 0.066 0.934 21 C 0.090 3.910 22 O -0.539 6.539 23 H 0.056 0.944 24 H 0.039 0.961 25 H 0.056 0.944 26 H 0.010 0.990 27 H 0.033 0.967 28 H 0.253 0.747 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.372 0.628 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.026 0.974 36 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 1.230 -10.754 13.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.036 4.036 3 H 0.083 0.917 4 C -0.008 4.008 5 C -0.505 4.505 6 H 0.074 0.926 7 C -0.148 4.148 8 N -0.552 5.552 9 Si 0.718 3.282 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.184 5.184 14 C -0.126 4.126 15 C 0.036 3.964 16 H 0.070 0.930 17 O -0.365 6.365 18 C -0.147 4.147 19 C -0.048 4.048 20 H 0.084 0.916 21 C 0.012 3.988 22 O -0.342 6.342 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.219 0.781 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.685 0.857 -10.757 12.694 hybrid contribution 0.124 0.478 0.254 0.555 sum -6.561 1.335 -10.503 12.456 Atomic orbital electron populations 1.22527 0.99692 1.01569 1.00265 1.22151 0.90068 0.98130 0.93215 0.91742 1.19328 0.96670 0.95802 0.88996 1.21057 0.91170 1.28658 1.09568 0.92606 1.24901 0.97656 0.96120 0.96074 1.69969 1.34698 1.34472 1.16093 0.86590 0.86980 0.77496 0.77160 1.19982 1.21844 1.21443 1.65023 1.47015 1.05523 1.00815 1.23655 1.01219 0.95666 0.92055 1.22690 0.88157 0.97063 0.88509 0.92978 1.86579 1.53804 1.34170 1.61902 1.22484 1.02750 0.95305 0.94172 1.22988 0.95467 0.92925 0.93470 0.91641 1.22098 0.83453 0.93670 0.99625 1.86602 1.24183 1.51631 1.71757 0.92529 0.94245 0.92470 0.97184 0.94955 0.93697 0.90179 0.94455 0.78145 0.91691 0.88595 0.91620 0.95624 0.78869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 7.73 37.16 0.29 -2.75 16 2 C 0.07 1.49 2.14 -67.71 -0.14 1.35 16 3 H 0.06 1.35 7.91 -51.93 -0.41 0.94 16 4 C 0.03 0.73 4.38 -27.88 -0.12 0.60 16 5 C -0.47 -13.22 8.75 -34.44 -0.30 -13.52 16 6 H 0.06 1.63 7.75 -52.49 -0.41 1.23 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.91 -27.24 13.29 55.43 0.74 -26.50 16 9 Si 0.89 22.74 29.54 -169.99 -5.02 17.72 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 N -0.46 -9.11 4.36 -214.51 -0.93 -10.05 16 14 C 0.00 0.05 6.17 -2.75 -0.02 0.03 16 15 C 0.10 1.40 4.35 -25.37 -0.11 1.29 16 16 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 17 O -0.56 -8.28 13.26 -35.23 -0.47 -8.74 16 18 C -0.11 -1.74 6.20 -24.87 -0.15 -1.90 16 19 C 0.06 1.04 2.13 -65.63 -0.14 0.90 16 20 H 0.07 1.04 5.25 -51.93 -0.27 0.76 16 21 C 0.09 1.65 6.43 37.15 0.24 1.89 16 22 O -0.54 -11.09 12.64 -35.23 -0.45 -11.53 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.04 0.58 7.05 -51.93 -0.37 0.21 16 25 H 0.06 0.94 6.67 -51.92 -0.35 0.59 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.03 0.85 4.72 -51.93 -0.25 0.61 16 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.08 1.38 7.96 -51.93 -0.41 0.96 16 30 H 0.04 0.56 7.00 -51.93 -0.36 0.19 16 31 H 0.37 3.72 9.11 45.56 0.41 4.14 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.78 7.31 -51.93 -0.38 1.40 16 34 H 0.07 1.36 5.14 -51.93 -0.27 1.09 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.37 6.40 9.12 45.56 0.42 6.81 16 LS Contribution 282.15 15.07 4.25 4.25 Total: -1.00 -33.01 282.15 -6.33 -39.34 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -3.89 Total: 6.27 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.56 Total: -10.75 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.20 Total: -36.55 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.91 Total: -20.28 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.01 -6.33 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593025716.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.327 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds