Wall clock time and date at job start Sun Mar 29 2020 22:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.46896 * 2 1 4 4 C 1.53007 * 109.47176 * 119.99333 * 2 1 3 5 5 C 1.50699 * 109.46968 * 181.52954 * 4 2 1 6 6 H 1.07998 * 119.99941 * 5.01584 * 5 4 2 7 7 C 1.37876 * 119.99883 * 185.00758 * 5 4 2 8 8 N 1.31521 * 120.00068 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00027 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47272 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46914 * 120.00447 * 9 7 5 12 12 H 1.48502 * 109.47104 * 240.00261 * 9 7 5 13 13 N 1.46896 * 109.47539 * 239.99491 * 2 1 3 14 14 C 1.47905 * 110.99815 * 81.76418 * 13 2 1 15 15 C 1.53992 * 107.22469 * 214.25561 * 14 13 2 16 16 H 1.09000 * 110.30612 * 120.04467 * 15 14 13 17 17 O 1.42899 * 110.30852 * 242.10818 * 15 14 13 18 18 C 1.54599 * 105.14080 * 1.12674 * 15 14 13 19 19 C 1.48809 * 111.18445 * 324.42695 * 13 2 1 20 20 H 1.09004 * 110.51938 * 41.07345 * 19 13 2 21 21 C 1.52994 * 110.84315 * 278.09093 * 19 13 2 22 22 O 1.42897 * 109.47042 * 304.61571 * 21 19 13 23 23 H 1.08997 * 109.47885 * 307.84326 * 1 2 3 24 24 H 1.08995 * 109.47414 * 67.84899 * 1 2 3 25 25 H 1.09007 * 109.47121 * 187.84802 * 1 2 3 26 26 H 1.08996 * 109.46997 * 301.52991 * 4 2 1 27 27 H 1.08998 * 109.46710 * 61.53090 * 4 2 1 28 28 H 0.96993 * 119.99996 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.91861 * 94.80552 * 14 13 2 30 30 H 1.09003 * 109.91918 * 333.70661 * 14 13 2 31 31 H 0.96701 * 114.00337 * 298.54685 * 17 15 14 32 32 H 1.09002 * 110.72171 * 140.31331 * 18 15 14 33 33 H 1.09000 * 110.71971 * 263.59510 * 18 15 14 34 34 H 1.08994 * 109.47074 * 64.61788 * 21 19 13 35 35 H 1.08998 * 109.47255 * 184.61826 * 21 19 13 36 36 H 0.96705 * 114.00259 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5465 -0.6883 1.2684 6 1 4.0841 -0.1332 0.5140 7 6 4.2384 -1.3669 2.2491 8 7 3.5837 -2.0432 3.1677 9 14 6.1058 -1.3269 2.2724 10 1 6.5975 -0.5028 1.1391 11 1 6.5724 -0.7360 3.5525 12 1 6.6322 -2.7096 2.1445 13 7 2.0197 -0.6926 -1.1993 14 6 2.0099 0.2080 -2.3725 15 6 1.6716 -0.6517 -3.6045 16 1 0.7583 -0.2915 -4.0779 17 8 2.7543 -0.6300 -4.5369 18 6 1.4631 -2.0813 -3.0543 19 6 1.1350 -1.8333 -1.5605 20 1 0.0874 -1.5583 -1.4373 21 6 1.4694 -3.0684 -0.7219 22 8 2.8551 -3.3841 -0.8704 23 1 -0.3635 0.6304 0.8115 24 1 -0.3634 0.3875 -0.9518 25 1 -0.3634 -1.0181 0.1403 26 1 1.6544 -0.2233 2.1390 27 1 1.6992 -1.7564 1.2358 28 1 4.0705 -2.5208 3.8574 29 1 2.9911 0.6659 -2.4974 30 1 1.2534 0.9816 -2.2405 31 1 2.9581 0.2499 -4.8826 32 1 0.6282 -2.5699 -3.5566 33 1 2.3744 -2.6706 -3.1565 34 1 1.2536 -2.8647 0.3269 35 1 0.8665 -3.9112 -1.0598 36 1 3.1386 -4.1582 -0.3649 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593025716.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:20 Heat of formation + Delta-G solvation = -111.948285 kcal Electronic energy + Delta-G solvation = -17496.026302 eV Core-core repulsion = 14786.458080 eV Total energy + Delta-G solvation = -2709.568222 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.81223 -37.67748 -36.88714 -35.14046 -33.57297 -30.97423 -29.49557 -28.89466 -25.92519 -25.14143 -22.29221 -21.87213 -20.07849 -18.36455 -18.31677 -18.01359 -16.84140 -16.53253 -16.03366 -15.75301 -14.90402 -14.59929 -14.54445 -14.21417 -13.98410 -13.56924 -13.28863 -13.05996 -12.93767 -12.71415 -12.57878 -12.35853 -12.21384 -11.75140 -11.68169 -11.37991 -11.20795 -11.03737 -10.80607 -10.54370 -10.16333 -8.85006 -8.02255 -6.01522 1.39893 1.42326 1.54470 2.52280 3.11021 3.33220 3.35623 3.58527 3.76872 3.97596 4.18378 4.24785 4.33352 4.42327 4.47475 4.53032 4.65350 4.68053 4.78242 4.89241 4.95201 5.04177 5.08991 5.21909 5.34072 5.41160 5.55557 5.83329 5.99291 6.31216 6.40493 6.61478 6.95141 7.07437 7.12216 7.60962 9.09761 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.009458 C = 0.008903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.725807 B = 2959.843864 C = 3144.350772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.080 3.920 3 H 0.053 0.947 4 C 0.032 3.968 5 C -0.472 4.472 6 H 0.040 0.960 7 C 0.002 3.998 8 N -0.938 5.938 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.497 5.497 14 C 0.002 3.998 15 C 0.103 3.897 16 H 0.090 0.910 17 O -0.579 6.579 18 C -0.107 4.107 19 C 0.058 3.942 20 H 0.089 0.911 21 C 0.087 3.913 22 O -0.564 6.564 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.058 0.942 26 H -0.017 1.017 27 H 0.022 0.978 28 H 0.255 0.745 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.392 0.608 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.059 0.941 36 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.230 1.597 -12.474 15.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.029 4.029 3 H 0.072 0.928 4 C -0.005 4.005 5 C -0.511 4.511 6 H 0.059 0.941 7 C -0.193 4.193 8 N -0.581 5.581 9 Si 0.774 3.226 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.221 5.221 14 C -0.126 4.126 15 C 0.044 3.956 16 H 0.108 0.892 17 O -0.387 6.387 18 C -0.145 4.145 19 C -0.050 4.050 20 H 0.107 0.893 21 C 0.009 3.991 22 O -0.369 6.369 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.001 0.999 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.242 0.758 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.677 1.239 -12.489 14.712 hybrid contribution 0.455 0.362 0.784 0.976 sum -7.222 1.601 -11.705 13.846 Atomic orbital electron populations 1.22382 0.96479 1.02046 1.02083 1.21826 0.92616 0.96613 0.91800 0.92829 1.19219 0.94986 0.95606 0.90646 1.21265 0.92972 1.27993 1.08826 0.94140 1.25581 1.01626 0.96090 0.95977 1.70065 1.36129 1.35243 1.16673 0.85688 0.82322 0.77484 0.77142 1.20149 1.21078 1.20998 1.64804 1.48651 1.07011 1.01657 1.23681 1.01176 0.95980 0.91766 1.22693 0.89449 0.95671 0.87827 0.89240 1.86531 1.54174 1.36188 1.61813 1.22458 1.02465 0.96096 0.93463 1.23096 0.96181 0.91471 0.94215 0.89331 1.22209 0.82815 0.95730 0.98342 1.86568 1.25870 1.52359 1.72061 0.92170 0.91252 0.92298 0.99862 0.95976 0.93613 0.91783 0.92350 0.75835 0.88508 0.91818 0.94645 0.92279 0.77997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.35 7.73 71.98 0.56 -4.79 16 2 C 0.08 3.25 2.14 44.92 0.10 3.35 16 3 H 0.05 2.24 7.91 -2.39 -0.02 2.22 16 4 C 0.03 1.67 4.38 29.85 0.13 1.80 16 5 C -0.47 -27.39 8.75 25.60 0.22 -27.16 16 6 H 0.04 2.42 7.75 -2.91 -0.02 2.40 16 7 C 0.00 0.15 5.46 84.65 0.46 0.61 16 8 N -0.94 -57.16 13.29 21.45 0.28 -56.88 16 9 Si 0.95 47.34 29.54 68.60 2.03 49.37 16 10 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 12 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 13 N -0.50 -19.19 4.36 -832.56 -3.63 -22.82 16 14 C 0.00 0.07 6.17 86.45 0.53 0.61 16 15 C 0.10 2.67 4.35 31.47 0.14 2.81 16 16 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 17 O -0.58 -15.66 13.26 -148.98 -1.98 -17.64 16 18 C -0.11 -3.12 6.20 31.80 0.20 -2.92 16 19 C 0.06 1.91 2.13 45.21 0.10 2.00 16 20 H 0.09 2.49 5.25 -2.38 -0.01 2.47 16 21 C 0.09 3.14 6.43 71.98 0.46 3.60 16 22 O -0.56 -23.47 12.64 -148.98 -1.88 -25.35 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.07 1.76 7.05 -2.39 -0.02 1.74 16 25 H 0.06 1.82 6.67 -2.38 -0.02 1.80 16 26 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H 0.02 1.20 4.72 -2.39 -0.01 1.19 16 28 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.06 2.14 7.96 -2.39 -0.02 2.12 16 30 H 0.06 1.54 7.00 -2.39 -0.02 1.52 16 31 H 0.39 6.81 9.11 -74.06 -0.67 6.14 16 32 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 2.29 7.31 -2.39 -0.02 2.27 16 34 H 0.04 1.49 5.14 -2.39 -0.01 1.48 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.37 13.41 9.12 -74.05 -0.68 12.74 16 Total: -1.00 -71.76 282.15 -2.54 -74.30 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -0.26 Total: 19.11 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 2.90 Total: -20.10 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -3.34 Total: -79.70 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -3.86 Total: -42.99 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -71.76 -2.54 -74.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593025716.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.646 kcal (2) G-P(sol) polarization free energy of solvation -71.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds