Wall clock time and date at job start Sun Mar 29 2020 21:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47116 * 2 1 4 4 C 1.53002 * 109.47220 * 239.99303 * 2 1 3 5 5 H 1.09008 * 109.46566 * 65.26518 * 4 2 1 6 6 F 1.39900 * 109.47347 * 305.26635 * 4 2 1 7 7 C 1.50694 * 109.47194 * 185.26203 * 4 2 1 8 8 O 1.21293 * 119.99921 * 45.46290 * 7 4 2 9 9 N 1.34776 * 120.00328 * 225.45736 * 7 4 2 10 10 C 1.37099 * 120.00320 * 179.97438 * 9 7 4 11 11 H 1.07994 * 120.00406 * 222.35103 * 10 9 7 12 12 C 1.38954 * 119.99706 * 42.35151 * 10 9 7 13 13 N 1.31412 * 120.00066 * 20.82655 * 12 10 9 14 14 Si 1.86801 * 119.99697 * 200.83384 * 12 10 9 15 15 H 1.48497 * 109.47314 * 89.99947 * 14 12 10 16 16 H 1.48494 * 109.46890 * 209.99576 * 14 12 10 17 17 H 1.48492 * 109.47132 * 329.99792 * 14 12 10 18 18 C 1.46499 * 119.99896 * 0.02562 * 9 7 4 19 19 C 1.53000 * 117.50057 * 183.16806 * 18 9 7 20 20 C 1.53000 * 117.50205 * 114.50485 * 18 9 7 21 21 H 1.08998 * 109.46998 * 296.08985 * 1 2 3 22 22 H 1.09001 * 109.47138 * 56.09302 * 1 2 3 23 23 H 1.09003 * 109.47197 * 176.09396 * 1 2 3 24 24 H 1.09004 * 109.47037 * 120.00025 * 2 1 3 25 25 H 1.08998 * 109.47734 * 59.99474 * 3 2 1 26 26 H 1.08998 * 109.47012 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47341 * 299.99420 * 3 2 1 28 28 H 0.96996 * 119.99665 * 184.94668 * 13 12 10 29 29 H 1.09000 * 115.54877 * 328.83324 * 18 9 7 30 30 H 1.09000 * 117.49424 * 359.97438 * 19 18 9 31 31 H 1.08998 * 117.50180 * 145.01251 * 19 18 9 32 32 H 1.09000 * 117.49952 * 214.97348 * 20 18 9 33 33 H 1.08997 * 117.49485 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2492 5 1 1.7557 -0.1560 -2.1367 6 9 1.4775 -2.0008 -1.3112 7 6 3.5413 -0.8352 -1.1857 8 8 4.0798 -1.1894 -0.1582 9 7 4.2858 -0.5437 -2.2707 10 6 5.6517 -0.6467 -2.2129 11 1 6.2703 0.1158 -2.6624 12 6 6.2401 -1.7324 -1.5757 13 7 5.5540 -2.8383 -1.3936 14 14 8.0063 -1.6197 -0.9780 15 1 8.0255 -1.1080 0.4159 16 1 8.6297 -2.9668 -1.0194 17 1 8.7677 -0.6948 -1.8554 18 6 3.6355 -0.1155 -3.5117 19 6 4.5289 0.1294 -4.7294 20 6 3.8993 1.3133 -3.9910 21 1 -0.3633 0.4519 0.9229 22 1 -0.3633 0.5733 -0.8529 23 1 -0.3634 -1.0253 -0.0700 24 1 1.8934 -0.5139 0.8900 25 1 1.6766 1.9564 0.8899 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 5.9391 -3.5699 -0.8863 29 1 2.6439 -0.5313 -3.6905 30 1 5.6005 -0.0277 -4.6070 31 1 4.1250 -0.1250 -5.7093 32 1 3.0814 1.8373 -4.4856 33 1 4.5564 1.9349 -3.3828 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784074501.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:02 Heat of formation + Delta-G solvation = -56.046042 kcal Electronic energy + Delta-G solvation = -17074.029037 eV Core-core repulsion = 14243.424613 eV Total energy + Delta-G solvation = -2830.604424 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.00894 -38.61790 -36.28726 -34.86893 -32.78886 -30.99282 -27.47103 -26.67053 -24.53762 -21.80165 -21.37064 -20.55288 -18.92763 -17.16062 -16.13092 -15.79302 -15.10906 -14.60859 -14.34840 -13.89767 -13.71182 -13.41523 -12.64228 -12.42291 -12.26493 -12.16016 -11.89673 -11.42624 -11.05443 -10.93797 -10.85421 -10.78536 -10.69771 -10.48845 -10.19965 -10.04283 -10.03029 -9.73784 -8.71999 -8.00826 -7.13009 -6.12399 -3.91853 3.31440 3.38278 3.40964 3.94618 4.21460 4.62572 4.68602 5.00162 5.14128 5.22465 5.37183 5.43433 5.54414 5.64637 5.72850 5.81206 5.93080 5.93809 6.05847 6.16985 6.19318 6.24364 6.38510 6.43936 6.63971 6.67651 6.71120 6.87735 7.58185 8.19664 8.97727 9.07095 9.58518 10.16739 10.93891 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.024723 B = 0.011280 C = 0.009361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.282592 B = 2481.626129 C = 2990.487698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.082 3.918 5 H 0.083 0.917 6 F -0.203 7.203 7 C 0.462 3.538 8 O -0.520 6.520 9 N -0.418 5.418 10 C -0.350 4.350 11 H 0.081 0.919 12 C 0.074 3.926 13 N -0.824 5.824 14 Si 0.908 3.092 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.066 3.934 19 C -0.171 4.171 20 C -0.205 4.205 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.266 0.734 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.053 7.071 -2.480 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.042 3.958 5 H 0.101 0.899 6 F -0.184 7.184 7 C 0.247 3.753 8 O -0.397 6.397 9 N -0.138 5.138 10 C -0.477 4.477 11 H 0.099 0.901 12 C -0.138 4.138 13 N -0.457 5.457 14 Si 0.734 3.266 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.040 4.040 19 C -0.208 4.208 20 C -0.244 4.244 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.107 0.893 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.753 6.610 -1.916 9.642 hybrid contribution 0.720 -0.195 0.155 0.762 sum -6.033 6.415 -1.762 8.981 Atomic orbital electron populations 1.21817 0.94807 1.02179 1.01490 1.21491 0.95794 0.97138 0.98543 1.21722 1.02356 0.94582 1.01281 1.21861 0.93769 0.80399 0.99793 0.89949 1.92788 1.86054 1.41899 1.97655 1.19986 0.86975 0.83767 0.84526 1.90531 1.72412 1.46417 1.30290 1.42819 1.05716 1.59953 1.05353 1.18910 0.79768 1.06345 1.42644 0.90106 1.25200 0.98674 0.93247 0.96661 1.69920 1.38941 1.02920 1.33898 0.86279 0.83300 0.77245 0.79742 1.20275 1.21288 1.19786 1.21758 0.96990 0.96518 0.88772 1.23087 1.01118 1.01749 0.94877 1.23341 1.03673 0.92360 1.05014 0.92481 0.92818 0.92156 0.89267 0.92508 0.91589 0.92787 0.92389 0.87936 0.87374 0.89624 0.89634 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.08 37.16 0.34 -1.70 16 2 C -0.11 -1.95 2.61 -90.62 -0.24 -2.18 16 3 C -0.14 -2.23 9.01 37.15 0.33 -1.90 16 4 C 0.08 1.69 2.87 -27.89 -0.08 1.61 16 5 H 0.08 1.49 5.89 -51.92 -0.31 1.18 16 6 F -0.20 -4.58 16.27 2.25 0.04 -4.54 16 7 C 0.46 11.91 5.31 -10.99 -0.06 11.85 16 8 O -0.52 -15.51 14.09 5.55 0.08 -15.43 16 9 N -0.42 -10.53 2.85 -107.73 -0.31 -10.84 16 10 C -0.35 -9.56 8.00 -14.93 -0.12 -9.68 16 11 H 0.08 2.11 7.17 -52.49 -0.38 1.73 16 12 C 0.07 2.09 4.30 -17.47 -0.08 2.02 16 13 N -0.82 -25.01 11.76 55.50 0.65 -24.35 16 14 Si 0.91 21.98 29.60 -169.99 -5.03 16.95 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.07 1.32 5.50 -67.93 -0.37 0.95 16 19 C -0.17 -3.05 9.80 -26.69 -0.26 -3.31 16 20 C -0.20 -3.39 10.36 -26.69 -0.28 -3.67 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.87 7.56 -51.93 -0.39 0.48 16 24 H 0.09 1.77 7.74 -51.93 -0.40 1.37 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.22 7.39 -51.93 -0.38 0.84 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.27 7.76 8.32 -40.82 -0.34 7.42 16 29 H 0.10 1.90 6.69 -51.93 -0.35 1.55 16 30 H 0.11 2.14 6.68 -51.93 -0.35 1.79 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 277.16 15.07 4.18 4.18 Total: -1.00 -32.65 277.16 -5.85 -38.50 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.65 Total: 1.54 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -0.81 Total: -6.01 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.35 Total: -35.19 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.08 Total: -15.43 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.04 Total: -4.54 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.65 -5.85 -38.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784074501.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.547 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds