Wall clock time and date at job start Sun Mar 29 2020 21:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47116 * 2 1 4 4 C 1.53002 * 109.47220 * 239.99303 * 2 1 3 5 5 H 1.09008 * 109.46566 * 65.26518 * 4 2 1 6 6 F 1.39900 * 109.47347 * 305.26635 * 4 2 1 7 7 C 1.50694 * 109.47194 * 185.26203 * 4 2 1 8 8 O 1.21293 * 119.99921 * 45.46290 * 7 4 2 9 9 N 1.34776 * 120.00328 * 225.45736 * 7 4 2 10 10 C 1.37099 * 120.00320 * 179.97438 * 9 7 4 11 11 H 1.07994 * 120.00406 * 222.35103 * 10 9 7 12 12 C 1.38954 * 119.99706 * 42.35151 * 10 9 7 13 13 N 1.31412 * 120.00066 * 20.82655 * 12 10 9 14 14 Si 1.86801 * 119.99697 * 200.83384 * 12 10 9 15 15 H 1.48497 * 109.47314 * 89.99947 * 14 12 10 16 16 H 1.48494 * 109.46890 * 209.99576 * 14 12 10 17 17 H 1.48492 * 109.47132 * 329.99792 * 14 12 10 18 18 C 1.46499 * 119.99896 * 0.02562 * 9 7 4 19 19 C 1.53000 * 117.50057 * 183.16806 * 18 9 7 20 20 C 1.53000 * 117.50205 * 114.50485 * 18 9 7 21 21 H 1.08998 * 109.46998 * 296.08985 * 1 2 3 22 22 H 1.09001 * 109.47138 * 56.09302 * 1 2 3 23 23 H 1.09003 * 109.47197 * 176.09396 * 1 2 3 24 24 H 1.09004 * 109.47037 * 120.00025 * 2 1 3 25 25 H 1.08998 * 109.47734 * 59.99474 * 3 2 1 26 26 H 1.08998 * 109.47012 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47341 * 299.99420 * 3 2 1 28 28 H 0.96996 * 119.99665 * 184.94668 * 13 12 10 29 29 H 1.09000 * 115.54877 * 328.83324 * 18 9 7 30 30 H 1.09000 * 117.49424 * 359.97438 * 19 18 9 31 31 H 1.08998 * 117.50180 * 145.01251 * 19 18 9 32 32 H 1.09000 * 117.49952 * 214.97348 * 20 18 9 33 33 H 1.08997 * 117.49485 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2492 5 1 1.7557 -0.1560 -2.1367 6 9 1.4775 -2.0008 -1.3112 7 6 3.5413 -0.8352 -1.1857 8 8 4.0798 -1.1894 -0.1582 9 7 4.2858 -0.5437 -2.2707 10 6 5.6517 -0.6467 -2.2129 11 1 6.2703 0.1158 -2.6624 12 6 6.2401 -1.7324 -1.5757 13 7 5.5540 -2.8383 -1.3936 14 14 8.0063 -1.6197 -0.9780 15 1 8.0255 -1.1080 0.4159 16 1 8.6297 -2.9668 -1.0194 17 1 8.7677 -0.6948 -1.8554 18 6 3.6355 -0.1155 -3.5117 19 6 4.5289 0.1294 -4.7294 20 6 3.8993 1.3133 -3.9910 21 1 -0.3633 0.4519 0.9229 22 1 -0.3633 0.5733 -0.8529 23 1 -0.3634 -1.0253 -0.0700 24 1 1.8934 -0.5139 0.8900 25 1 1.6766 1.9564 0.8899 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 5.9391 -3.5699 -0.8863 29 1 2.6439 -0.5313 -3.6905 30 1 5.6005 -0.0277 -4.6070 31 1 4.1250 -0.1250 -5.7093 32 1 3.0814 1.8373 -4.4856 33 1 4.5564 1.9349 -3.3828 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784074501.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:01 Heat of formation + Delta-G solvation = -76.719501 kcal Electronic energy + Delta-G solvation = -17074.925505 eV Core-core repulsion = 14243.424613 eV Total energy + Delta-G solvation = -2831.500892 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.74517 -40.45184 -37.94787 -36.34165 -34.76744 -32.94406 -29.14449 -27.92021 -26.44653 -23.27874 -22.94770 -22.14695 -20.63551 -18.97880 -17.94730 -17.53330 -16.75914 -16.57052 -15.88327 -15.59386 -15.36136 -15.13200 -14.40375 -13.94083 -13.81329 -13.57759 -13.31906 -12.98024 -12.87999 -12.78882 -12.66642 -12.24488 -12.10145 -12.01945 -11.91858 -11.74543 -11.51597 -11.20351 -10.75437 -9.95968 -9.11768 -8.24422 -6.06512 1.34184 1.42191 1.47591 2.05546 2.31857 2.85481 3.06169 3.28062 3.52723 3.72469 3.80010 3.97965 4.10380 4.22871 4.26973 4.43744 4.60404 4.69396 4.82968 4.89407 4.93206 4.97190 5.01771 5.17290 5.24363 5.35822 5.42069 5.42614 5.47601 6.11167 6.92953 7.08152 7.57573 8.19752 8.80806 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.024723 B = 0.011280 C = 0.009361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.282592 B = 2481.626129 C = 2990.487698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C -0.135 4.135 4 C 0.085 3.915 5 H 0.117 0.883 6 F -0.216 7.216 7 C 0.446 3.554 8 O -0.577 6.577 9 N -0.432 5.432 10 C -0.355 4.355 11 H 0.087 0.913 12 C 0.019 3.981 13 N -0.869 5.869 14 Si 0.967 3.033 15 H -0.290 1.290 16 H -0.284 1.284 17 H -0.248 1.248 18 C 0.027 3.973 19 C -0.169 4.169 20 C -0.168 4.168 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.027 0.973 27 H 0.081 0.919 28 H 0.259 0.741 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 9.302 -3.987 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 C -0.192 4.192 4 C 0.046 3.954 5 H 0.135 0.865 6 F -0.197 7.197 7 C 0.233 3.767 8 O -0.458 6.458 9 N -0.152 5.152 10 C -0.482 4.482 11 H 0.105 0.895 12 C -0.187 4.187 13 N -0.505 5.505 14 Si 0.792 3.208 15 H -0.217 1.217 16 H -0.210 1.210 17 H -0.172 1.172 18 C -0.078 4.078 19 C -0.206 4.206 20 C -0.207 4.207 21 H 0.098 0.902 22 H 0.097 0.903 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.047 0.953 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.138 0.862 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.148 0.852 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.052 8.877 -3.483 12.480 hybrid contribution 1.103 -0.816 0.559 1.481 sum -6.949 8.061 -2.924 11.037 Atomic orbital electron populations 1.21777 0.91365 1.02384 1.03893 1.21519 0.98504 0.97427 0.95417 1.21684 0.99876 0.93740 1.03909 1.21999 0.90168 0.80288 1.02953 0.86500 1.92758 1.85854 1.43251 1.97872 1.20906 0.89283 0.82596 0.83897 1.90481 1.74118 1.48843 1.32357 1.43072 1.05426 1.59462 1.07199 1.19223 0.81423 1.05795 1.41727 0.89492 1.26092 1.02516 0.93075 0.97053 1.70037 1.40958 1.03778 1.35701 0.85354 0.79173 0.77671 0.78641 1.21664 1.20976 1.17174 1.22092 0.98059 0.99971 0.87670 1.23160 0.99523 1.02423 0.95526 1.23375 1.03879 0.90461 1.02963 0.90196 0.90258 0.93123 0.92753 0.89977 0.95342 0.90055 0.93188 0.86206 0.89892 0.86325 0.85152 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.08 71.98 0.65 -2.77 16 2 C -0.11 -3.74 2.61 -10.79 -0.03 -3.77 16 3 C -0.13 -3.98 9.01 71.98 0.65 -3.33 16 4 C 0.09 3.47 2.87 29.85 0.09 3.56 16 5 H 0.12 3.90 5.89 -2.38 -0.01 3.88 16 6 F -0.22 -9.78 16.27 44.97 0.73 -9.05 16 7 C 0.45 23.48 5.31 87.66 0.47 23.94 16 8 O -0.58 -36.09 14.09 -3.07 -0.04 -36.14 16 9 N -0.43 -21.86 2.85 -613.14 -1.75 -23.61 16 10 C -0.35 -19.62 8.00 84.04 0.67 -18.95 16 11 H 0.09 4.56 7.17 -2.91 -0.02 4.54 16 12 C 0.02 1.11 4.30 84.93 0.36 1.47 16 13 N -0.87 -54.95 11.76 21.66 0.25 -54.70 16 14 Si 0.97 46.32 29.60 68.60 2.03 48.35 16 15 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 16 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 17 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 18 C 0.03 1.02 5.50 44.99 0.25 1.26 16 19 C -0.17 -5.59 9.80 30.62 0.30 -5.29 16 20 C -0.17 -4.94 10.36 30.62 0.32 -4.62 16 21 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.05 1.36 7.56 -2.39 -0.02 1.34 16 24 H 0.05 2.22 7.74 -2.38 -0.02 2.20 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.03 1.03 7.39 -2.39 -0.02 1.02 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.26 15.89 8.32 -92.71 -0.77 15.12 16 29 H 0.12 4.10 6.69 -2.39 -0.02 4.09 16 30 H 0.08 3.18 6.68 -2.39 -0.02 3.17 16 31 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 32 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -75.17 277.16 6.05 -69.12 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 1.09 Total: 14.51 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 3.73 Total: -8.49 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -1.49 Total: -78.31 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.04 Total: -36.14 kcal Atomic # 9 Polarization: -9.78 SS G_CDS: 0.73 Total: -9.05 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -75.17 6.05 -69.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784074501.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.595 kcal (2) G-P(sol) polarization free energy of solvation -75.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds