Wall clock time and date at job start Sun Mar 29 2020 22:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47120 * 270.00022 * 3 2 1 5 5 H 1.48500 * 109.47074 * 29.99712 * 3 2 1 6 6 H 1.48502 * 109.47532 * 149.99629 * 3 2 1 7 7 C 1.37877 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99637 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00377 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47267 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00203 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47305 * 325.00930 * 11 10 9 13 13 C 1.53003 * 109.46887 * 85.00252 * 11 10 9 14 14 O 1.42892 * 109.47209 * 65.00479 * 13 11 10 15 15 C 1.52994 * 109.47826 * 205.00579 * 11 10 9 16 16 C 1.53001 * 109.47300 * 64.99736 * 15 11 10 17 17 H 1.08997 * 110.35136 * 55.69455 * 16 15 11 18 18 C 1.54940 * 110.31180 * 177.83927 * 16 15 11 19 19 C 1.55300 * 100.94415 * 155.36050 * 18 16 15 20 20 C 1.54377 * 102.25502 * 325.86750 * 19 18 16 21 21 O 1.43245 * 107.58529 * 21.35358 * 20 19 18 22 22 H 0.97004 * 119.99844 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47159 * 59.99341 * 9 7 2 24 24 H 1.09003 * 109.47067 * 299.99660 * 9 7 2 25 25 H 1.00896 * 111.00480 * 303.95931 * 10 9 7 26 26 H 1.09006 * 109.47087 * 185.00091 * 13 11 10 27 27 H 1.08994 * 109.47014 * 304.99903 * 13 11 10 28 28 H 0.96701 * 114.00705 * 180.02562 * 14 13 11 29 29 H 1.09005 * 109.46852 * 304.99861 * 15 11 10 30 30 H 1.08992 * 109.47996 * 185.00526 * 15 11 10 31 31 H 1.09007 * 111.12756 * 37.44000 * 18 16 15 32 32 H 1.09003 * 111.16152 * 273.29689 * 18 16 15 33 33 H 1.09006 * 110.85287 * 207.67375 * 19 18 16 34 34 H 1.09007 * 110.84948 * 84.05944 * 19 18 16 35 35 H 1.09000 * 109.83189 * 261.84669 * 20 19 18 36 36 H 1.09004 * 109.91014 * 140.91129 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5053 -4.9070 0.0011 12 1 0.5922 -4.8250 0.5908 13 6 1.1512 -5.2958 -1.4357 14 8 2.3515 -5.5171 -2.1788 15 6 2.4114 -5.9784 0.6109 16 6 2.6641 -5.6544 2.0846 17 1 1.7189 -5.5550 2.6184 18 6 3.5362 -6.7571 2.7359 19 6 4.1825 -5.9684 3.9073 20 6 4.3503 -4.5590 3.3001 21 8 3.4338 -4.4476 2.2049 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8405 -3.5487 -0.7807 26 1 0.5548 -6.2082 -1.4287 27 1 0.5798 -4.4918 -1.8993 28 1 2.2028 -5.7674 -3.1009 29 1 3.3607 -5.9991 0.0754 30 1 1.9280 -6.9520 0.5306 31 1 4.2939 -7.1201 2.0415 32 1 2.9213 -7.5773 3.1066 33 1 5.1501 -6.3936 4.1742 34 1 3.5177 -5.9421 4.7708 35 1 5.3717 -4.4298 2.9421 36 1 4.1233 -3.8019 4.0508 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905474046.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:24 Heat of formation + Delta-G solvation = -102.372800 kcal Electronic energy + Delta-G solvation = -16744.695104 eV Core-core repulsion = 14035.542106 eV Total energy + Delta-G solvation = -2709.152997 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.03552 -37.32970 -34.68739 -32.74272 -31.70630 -30.86884 -28.34023 -25.57016 -25.14258 -21.89627 -21.27840 -20.73219 -19.81368 -17.08381 -16.47085 -16.14971 -15.43551 -14.67964 -14.48233 -14.26827 -14.18568 -13.39598 -13.20259 -12.62418 -12.47266 -12.05912 -11.73960 -11.49687 -11.32544 -11.28195 -10.86116 -10.73778 -10.64483 -10.49607 -10.36589 -10.13889 -9.80383 -9.53384 -9.01212 -8.81385 -8.35163 -6.89739 -5.90736 -3.89992 3.39611 3.44953 3.51365 4.33417 4.53616 4.62870 4.74793 4.93316 5.16731 5.33995 5.44643 5.45792 5.52828 5.56865 5.73953 5.76662 5.81340 5.88064 6.00107 6.06914 6.20310 6.25625 6.28983 6.35546 6.52089 6.79418 7.42054 7.61176 7.77314 7.89255 7.97357 8.31334 8.69396 8.88185 9.21274 9.73926 11.20744 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.007993 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.892653 B = 3502.116960 C = 4406.608719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.052 3.948 3 Si 0.897 3.103 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.196 3.804 10 N -0.658 5.658 11 C 0.092 3.908 12 H 0.077 0.923 13 C 0.043 3.957 14 O -0.566 6.566 15 C -0.099 4.099 16 C 0.092 3.908 17 H 0.058 0.942 18 C -0.155 4.155 19 C -0.156 4.156 20 C 0.044 3.956 21 O -0.324 6.324 22 H 0.259 0.741 23 H -0.022 1.022 24 H 0.024 0.976 25 H 0.335 0.665 26 H 0.035 0.965 27 H 0.047 0.953 28 H 0.370 0.630 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 -14.429 2.545 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.148 4.148 3 Si 0.725 3.275 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.070 3.930 10 N -0.288 5.288 11 C -0.020 4.020 12 H 0.095 0.905 13 C -0.036 4.036 14 O -0.370 6.370 15 C -0.138 4.138 16 C 0.034 3.966 17 H 0.076 0.924 18 C -0.192 4.192 19 C -0.194 4.194 20 C -0.034 4.034 21 O -0.242 6.242 22 H 0.068 0.932 23 H -0.004 1.004 24 H 0.042 0.958 25 H 0.152 0.848 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.215 0.785 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.750 -13.936 3.698 15.181 hybrid contribution -0.333 0.576 -1.250 1.416 sum 4.417 -13.360 2.448 14.283 Atomic orbital electron populations 1.69970 1.06032 1.26444 1.51920 1.24978 0.94839 0.99220 0.95767 0.86519 0.79878 0.83252 0.77873 1.20908 1.21417 1.19793 1.21218 0.93586 0.90253 1.48860 0.91988 1.19540 0.90674 0.87899 0.94926 1.60569 1.19625 0.99556 1.49089 1.21613 0.96850 0.92388 0.91120 0.90478 1.23076 0.86548 0.98544 0.95459 1.86489 1.32009 1.92258 1.26213 1.21622 1.01232 0.96694 0.94203 1.22785 0.94134 0.83869 0.95825 0.92392 1.23357 0.99763 0.98618 0.97490 1.23112 1.01229 0.96464 0.98555 1.23083 0.94575 0.95457 0.90269 1.88939 1.51492 1.35029 1.48711 0.93188 1.00406 0.95820 0.84759 0.94685 0.93448 0.78464 0.90690 0.92064 0.90685 0.90824 0.90888 0.91104 0.92238 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.29 55.43 0.74 -27.13 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 22.62 29.54 -169.99 -5.02 17.60 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.50 -14.89 9.32 -34.44 -0.32 -15.21 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.20 5.37 5.24 -4.98 -0.03 5.35 16 10 N -0.66 -15.08 4.67 -108.00 -0.50 -15.58 16 11 C 0.09 1.70 2.41 -67.72 -0.16 1.54 16 12 H 0.08 1.47 7.80 -51.93 -0.40 1.07 16 13 C 0.04 0.70 6.72 37.16 0.25 0.95 16 14 O -0.57 -8.70 12.24 -35.23 -0.43 -9.14 16 15 C -0.10 -1.57 4.43 -26.73 -0.12 -1.69 16 16 C 0.09 1.46 3.43 -25.71 -0.09 1.37 16 17 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.15 -1.89 6.57 -24.49 -0.16 -2.05 16 19 C -0.16 -1.84 7.02 -24.79 -0.17 -2.02 16 20 C 0.04 0.67 7.79 37.88 0.30 0.96 16 21 O -0.32 -6.26 9.50 -35.23 -0.33 -6.60 16 22 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 23 H -0.02 -0.62 7.36 -51.93 -0.38 -1.01 16 24 H 0.02 0.70 8.06 -51.93 -0.42 0.28 16 25 H 0.33 7.85 7.93 -39.29 -0.31 7.54 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.85 7.35 -51.93 -0.38 0.47 16 28 H 0.37 3.91 9.12 45.56 0.42 4.32 16 29 H 0.07 1.28 7.73 -51.93 -0.40 0.88 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.89 8.06 -51.93 -0.42 0.48 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 293.60 15.07 4.42 4.42 Total: -1.00 -33.05 293.60 -6.96 -40.02 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.23 Total: 5.74 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -0.60 Total: -9.34 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.23 Total: -42.71 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.77 Total: -15.73 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.05 -6.96 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905474046.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.354 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds