Wall clock time and date at job start Sun Mar 29 2020 22:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47120 * 270.00022 * 3 2 1 5 5 H 1.48500 * 109.47074 * 29.99712 * 3 2 1 6 6 H 1.48502 * 109.47532 * 149.99629 * 3 2 1 7 7 C 1.37877 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99637 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00377 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47267 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00203 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47305 * 325.00930 * 11 10 9 13 13 C 1.53003 * 109.46887 * 85.00252 * 11 10 9 14 14 O 1.42892 * 109.47209 * 65.00479 * 13 11 10 15 15 C 1.52994 * 109.47826 * 205.00579 * 11 10 9 16 16 C 1.53001 * 109.47300 * 64.99736 * 15 11 10 17 17 H 1.08997 * 110.35136 * 55.69455 * 16 15 11 18 18 C 1.54940 * 110.31180 * 177.83927 * 16 15 11 19 19 C 1.55300 * 100.94415 * 155.36050 * 18 16 15 20 20 C 1.54377 * 102.25502 * 325.86750 * 19 18 16 21 21 O 1.43245 * 107.58529 * 21.35358 * 20 19 18 22 22 H 0.97004 * 119.99844 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47159 * 59.99341 * 9 7 2 24 24 H 1.09003 * 109.47067 * 299.99660 * 9 7 2 25 25 H 1.00896 * 111.00480 * 303.95931 * 10 9 7 26 26 H 1.09006 * 109.47087 * 185.00091 * 13 11 10 27 27 H 1.08994 * 109.47014 * 304.99903 * 13 11 10 28 28 H 0.96701 * 114.00705 * 180.02562 * 14 13 11 29 29 H 1.09005 * 109.46852 * 304.99861 * 15 11 10 30 30 H 1.08992 * 109.47996 * 185.00526 * 15 11 10 31 31 H 1.09007 * 111.12756 * 37.44000 * 18 16 15 32 32 H 1.09003 * 111.16152 * 273.29689 * 18 16 15 33 33 H 1.09006 * 110.85287 * 207.67375 * 19 18 16 34 34 H 1.09007 * 110.84948 * 84.05944 * 19 18 16 35 35 H 1.09000 * 109.83189 * 261.84669 * 20 19 18 36 36 H 1.09004 * 109.91014 * 140.91129 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5053 -4.9070 0.0011 12 1 0.5922 -4.8250 0.5908 13 6 1.1512 -5.2958 -1.4357 14 8 2.3515 -5.5171 -2.1788 15 6 2.4114 -5.9784 0.6109 16 6 2.6641 -5.6544 2.0846 17 1 1.7189 -5.5550 2.6184 18 6 3.5362 -6.7571 2.7359 19 6 4.1825 -5.9684 3.9073 20 6 4.3503 -4.5590 3.3001 21 8 3.4338 -4.4476 2.2049 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8405 -3.5487 -0.7807 26 1 0.5548 -6.2082 -1.4287 27 1 0.5798 -4.4918 -1.8993 28 1 2.2028 -5.7674 -3.1009 29 1 3.3607 -5.9991 0.0754 30 1 1.9280 -6.9520 0.5306 31 1 4.2939 -7.1201 2.0415 32 1 2.9213 -7.5773 3.1066 33 1 5.1501 -6.3936 4.1742 34 1 3.5177 -5.9421 4.7708 35 1 5.3717 -4.4298 2.9421 36 1 4.1233 -3.8019 4.0508 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905474046.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:23 Heat of formation + Delta-G solvation = -128.400181 kcal Electronic energy + Delta-G solvation = -16745.823736 eV Core-core repulsion = 14035.542106 eV Total energy + Delta-G solvation = -2710.281629 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.27486 -38.72724 -36.29839 -34.76382 -32.98772 -32.39930 -29.86439 -27.60667 -26.35778 -23.85506 -22.53235 -21.98340 -21.26327 -18.51166 -18.32140 -17.56464 -16.71774 -16.60908 -15.95483 -15.79372 -15.58165 -14.98394 -14.45466 -14.24299 -13.82737 -13.78469 -13.35233 -13.16748 -12.93487 -12.67629 -12.42116 -12.35338 -12.15100 -11.86694 -11.74838 -11.56674 -11.46062 -11.21451 -10.85046 -10.62516 -10.11762 -8.76374 -8.19663 -6.29050 1.38719 1.41171 1.53368 2.41394 3.12655 3.18703 3.36830 3.72520 3.79817 3.86651 4.13032 4.20985 4.26716 4.39793 4.47118 4.54738 4.65593 4.73003 4.89489 4.94224 4.96631 5.03770 5.08248 5.15122 5.19703 5.29932 5.40143 5.50135 5.67331 6.10891 6.55435 6.64048 6.83845 6.92184 7.02918 7.41373 8.91809 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.007993 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.892653 B = 3502.116960 C = 4406.608719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.217 3.783 10 N -0.657 5.657 11 C 0.081 3.919 12 H 0.065 0.935 13 C 0.054 3.946 14 O -0.577 6.577 15 C -0.087 4.087 16 C 0.079 3.921 17 H 0.048 0.952 18 C -0.142 4.142 19 C -0.145 4.145 20 C 0.032 3.968 21 O -0.371 6.371 22 H 0.264 0.736 23 H -0.045 1.045 24 H -0.008 1.008 25 H 0.330 0.670 26 H 0.072 0.928 27 H 0.022 0.978 28 H 0.392 0.608 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 -15.680 2.717 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.089 3.911 10 N -0.287 5.287 11 C -0.029 4.029 12 H 0.083 0.917 13 C -0.026 4.026 14 O -0.385 6.385 15 C -0.125 4.125 16 C 0.022 3.978 17 H 0.066 0.934 18 C -0.180 4.180 19 C -0.183 4.183 20 C -0.045 4.045 21 O -0.290 6.290 22 H 0.073 0.927 23 H -0.028 1.028 24 H 0.010 0.990 25 H 0.147 0.853 26 H 0.090 0.910 27 H 0.040 0.960 28 H 0.241 0.759 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.781 -15.223 3.853 16.733 hybrid contribution -0.679 0.923 -1.317 1.746 sum 5.102 -14.300 2.536 15.393 Atomic orbital electron populations 1.70092 1.07662 1.27771 1.52143 1.25923 0.95814 1.03207 0.94838 0.85366 0.78448 0.78180 0.78492 1.19564 1.20468 1.19301 1.21525 0.93496 0.91759 1.49691 0.92584 1.19122 0.90523 0.89276 0.92178 1.60468 1.18988 1.00329 1.48878 1.21783 0.96809 0.91163 0.93194 0.91709 1.22808 0.86865 0.99308 0.93578 1.86433 1.31637 1.92349 1.28041 1.21550 1.00124 0.96982 0.93812 1.22968 0.94283 0.84481 0.96086 0.93408 1.23299 0.99454 0.97942 0.97263 1.23080 1.02806 0.93935 0.98438 1.23253 0.93982 0.97756 0.89537 1.88879 1.52542 1.37346 1.50229 0.92743 1.02760 0.99018 0.85258 0.90961 0.95998 0.75858 0.91734 0.88571 0.90049 0.88152 0.88367 0.90258 0.91982 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.88 13.29 21.45 0.28 -58.59 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 46.78 29.54 68.60 2.03 48.80 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.53 -32.26 9.32 25.60 0.24 -32.02 16 8 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 9 C 0.22 12.45 5.24 85.56 0.45 12.89 16 10 N -0.66 -31.13 4.67 -495.59 -2.31 -33.44 16 11 C 0.08 3.03 2.41 44.91 0.11 3.14 16 12 H 0.06 2.55 7.80 -2.38 -0.02 2.53 16 13 C 0.05 1.70 6.72 71.98 0.48 2.19 16 14 O -0.58 -16.94 12.24 -148.98 -1.82 -18.76 16 15 C -0.09 -2.63 4.43 30.59 0.14 -2.49 16 16 C 0.08 2.46 3.43 31.26 0.11 2.56 16 17 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 18 C -0.14 -3.06 6.57 32.05 0.21 -2.85 16 19 C -0.15 -3.09 7.02 31.85 0.22 -2.86 16 20 C 0.03 0.96 7.79 72.45 0.56 1.53 16 21 O -0.37 -14.56 9.50 -148.98 -1.42 -15.98 16 22 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 23 H -0.05 -2.73 7.36 -2.39 -0.02 -2.75 16 24 H -0.01 -0.52 8.06 -2.39 -0.02 -0.54 16 25 H 0.33 15.95 7.93 -89.70 -0.71 15.24 16 26 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.02 0.80 7.35 -2.39 -0.02 0.78 16 28 H 0.39 7.51 9.12 -74.06 -0.68 6.84 16 29 H 0.06 2.11 7.73 -2.38 -0.02 2.09 16 30 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.08 1.67 8.06 -2.38 -0.02 1.65 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.08 1.55 8.14 -2.38 -0.02 1.54 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -73.27 293.60 -0.58 -73.85 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -0.33 Total: 21.59 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 2.98 Total: -17.48 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -2.03 Total: -92.03 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -3.24 Total: -34.74 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -73.27 -0.58 -73.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905474046.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.549 kcal (2) G-P(sol) polarization free energy of solvation -73.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds