Wall clock time and date at job start Sun Mar 29 2020 21:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46988 * 2 1 4 4 C 1.52996 * 109.47189 * 240.00311 * 2 1 3 5 5 C 1.53000 * 109.47209 * 119.99889 * 2 1 3 6 6 H 1.08997 * 109.46767 * 182.03901 * 5 2 1 7 7 C 1.53241 * 109.46469 * 62.05105 * 5 2 1 8 8 S 1.81739 * 108.79412 * 182.34230 * 7 5 2 9 9 C 1.81740 * 102.31097 * 54.53866 * 8 7 5 10 10 C 1.53238 * 108.79616 * 305.46065 * 9 8 7 11 11 N 1.46368 * 109.47093 * 302.03543 * 5 2 1 12 12 C 1.36946 * 119.64765 * 5.06366 * 11 5 2 13 13 H 1.07990 * 119.99995 * 319.00593 * 12 11 5 14 14 C 1.38809 * 119.99834 * 138.99741 * 12 11 5 15 15 N 1.31620 * 120.00393 * 351.98094 * 14 12 11 16 16 Si 1.86806 * 119.99974 * 171.97637 * 14 12 11 17 17 H 1.48496 * 109.46893 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46852 * 120.00124 * 16 14 12 19 19 H 1.48503 * 109.46941 * 240.00535 * 16 14 12 20 20 H 1.09006 * 109.47252 * 322.91724 * 1 2 3 21 21 H 1.09006 * 109.47302 * 82.91661 * 1 2 3 22 22 H 1.08999 * 109.47546 * 202.91719 * 1 2 3 23 23 H 1.08999 * 109.46865 * 206.99774 * 3 2 1 24 24 H 1.09004 * 109.47185 * 326.99955 * 3 2 1 25 25 H 1.09003 * 109.46567 * 86.99504 * 3 2 1 26 26 H 1.08999 * 109.47191 * 299.99976 * 4 2 1 27 27 H 1.09007 * 109.47224 * 59.99441 * 4 2 1 28 28 H 1.08994 * 109.47280 * 179.97438 * 4 2 1 29 29 H 1.09004 * 109.58227 * 302.13491 * 7 5 2 30 30 H 1.09004 * 109.58430 * 62.54556 * 7 5 2 31 31 H 1.09004 * 109.58201 * 65.25300 * 9 8 7 32 32 H 1.08997 * 109.58218 * 185.66725 * 9 8 7 33 33 H 1.08999 * 109.47139 * 177.66255 * 10 9 8 34 34 H 1.09002 * 109.46863 * 297.65431 * 10 9 8 35 35 H 0.97001 * 120.00516 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 3.1293 -0.6896 1.2676 7 6 1.5718 -2.1801 1.2235 8 16 2.1277 -3.0004 2.7470 9 6 1.4552 -1.9141 4.0396 10 6 1.9352 -0.4822 3.7801 11 7 1.5125 -0.0601 2.4438 12 6 0.6142 0.9649 2.3099 13 1 0.7515 1.7056 1.5362 14 6 -0.4730 1.0515 3.1686 15 7 -0.7300 0.0693 4.0062 16 14 -1.5712 2.5623 3.1356 17 1 -1.0716 3.5151 2.1121 18 1 -2.9597 2.1575 2.7987 19 1 -1.5556 3.2148 4.4695 20 1 -0.3634 0.8199 0.6197 21 1 -0.3634 0.1267 -1.0199 22 1 -0.3634 -0.9465 0.4002 23 1 3.0244 1.4799 -0.4665 24 1 1.3485 2.0725 -0.5597 25 1 2.1102 1.8030 1.0263 26 1 1.6767 -1.7488 -1.2493 27 1 1.6765 -0.2073 -2.1393 28 1 3.1299 -0.7208 -1.2495 29 1 0.4837 -2.2137 1.1667 30 1 2.0006 -2.6863 0.3586 31 1 0.3659 -1.9449 4.0124 32 1 1.8078 -2.2464 5.0159 33 1 1.5043 0.1862 4.5256 34 1 3.0227 -0.4461 3.8453 35 1 -1.4895 0.1300 4.6065 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931590123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:10 Heat of formation + Delta-G solvation = 32.191038 kcal Electronic energy + Delta-G solvation = -15743.907030 eV Core-core repulsion = 13483.342029 eV Total energy + Delta-G solvation = -2260.565001 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.59316 -34.39427 -31.74857 -29.56494 -29.05560 -26.50097 -26.17326 -24.05157 -22.48600 -20.47824 -18.14565 -16.92271 -15.55565 -14.83662 -14.09649 -13.88314 -13.55621 -13.43324 -12.99427 -12.96446 -12.42794 -12.01462 -11.66071 -11.33580 -11.28054 -10.93508 -10.88782 -10.87415 -10.62941 -10.45862 -10.25784 -10.06553 -9.73249 -9.59982 -9.02867 -8.75848 -8.29025 -7.02806 -6.37977 -5.87574 -3.43397 2.83705 3.28697 3.38095 3.38885 3.54665 4.39390 5.19120 5.29977 5.55466 5.59701 5.79681 5.98879 6.04890 6.19491 6.26239 6.33108 6.39848 6.40764 6.43541 6.51303 6.56920 6.66172 6.72110 6.90194 7.01572 7.06911 7.27117 7.29879 7.44285 7.60774 7.80551 8.46304 9.15694 9.71942 10.32315 11.18157 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.015230 C = 0.010415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.794221 B = 1838.048880 C = 2687.893644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.148 4.148 4 C -0.140 4.140 5 C 0.187 3.813 6 H 0.039 0.961 7 C -0.083 4.083 8 S -0.341 6.341 9 C -0.073 4.073 10 C 0.178 3.822 11 N -0.586 5.586 12 C -0.265 4.265 13 H 0.091 0.909 14 C 0.013 3.987 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.275 1.275 18 H -0.289 1.289 19 H -0.289 1.289 20 H 0.100 0.900 21 H 0.019 0.981 22 H 0.048 0.952 23 H 0.032 0.968 24 H 0.043 0.957 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.013 0.987 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.597 -0.569 -5.044 6.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.052 4.052 3 C -0.205 4.205 4 C -0.198 4.198 5 C 0.079 3.921 6 H 0.057 0.943 7 C -0.234 4.234 8 S -0.114 6.114 9 C -0.223 4.223 10 C 0.051 3.949 11 N -0.308 5.308 12 C -0.395 4.395 13 H 0.108 0.892 14 C -0.187 4.187 15 N -0.539 5.539 16 Si 0.721 3.279 17 H -0.200 1.200 18 H -0.216 1.216 19 H -0.216 1.216 20 H 0.118 0.882 21 H 0.038 0.962 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.031 0.969 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.071 -1.543 -4.774 6.461 hybrid contribution -1.518 1.469 -0.014 2.112 sum 2.554 -0.075 -4.788 5.427 Atomic orbital electron populations 1.22384 0.93861 1.05008 0.98766 1.20390 0.96837 0.95047 0.92969 1.22246 0.98423 0.95835 1.04012 1.21995 1.00159 1.00094 0.97572 1.20673 0.95378 0.88147 0.87907 0.94344 1.24113 1.03973 1.00911 0.94367 1.86050 1.75857 1.42995 1.06542 1.24094 1.06008 0.97894 0.94292 1.20627 0.93659 0.92173 0.88464 1.43904 1.50003 1.37936 0.98976 1.19687 1.00926 1.02146 1.16722 0.89187 1.25421 0.96676 0.96788 0.99823 1.69857 1.29119 1.30567 1.24364 0.86395 0.80840 0.82965 0.77681 1.19982 1.21582 1.21569 0.88197 0.96189 0.93261 0.94866 0.93808 0.88802 0.93062 0.93315 0.93395 0.89859 0.90041 0.86722 0.91016 0.89727 0.96944 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 7.60 37.16 0.28 -2.54 16 2 C -0.05 -0.92 0.54 -154.51 -0.08 -1.00 16 3 C -0.15 -2.63 7.69 37.16 0.29 -2.35 16 4 C -0.14 -2.15 7.81 37.16 0.29 -1.86 16 5 C 0.19 3.80 2.01 -67.88 -0.14 3.66 16 6 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.08 -1.67 5.25 37.28 0.20 -1.47 16 8 S -0.34 -7.10 22.29 -107.50 -2.40 -9.50 16 9 C -0.07 -1.61 6.46 37.28 0.24 -1.37 16 10 C 0.18 4.06 5.35 -3.99 -0.02 4.04 16 11 N -0.59 -13.38 2.57 -165.58 -0.43 -13.81 16 12 C -0.27 -6.35 4.86 -15.06 -0.07 -6.42 16 13 H 0.09 2.10 3.47 -52.49 -0.18 1.92 16 14 C 0.01 0.32 4.89 -17.43 -0.09 0.23 16 15 N -0.90 -23.50 9.91 55.49 0.55 -22.95 16 16 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H 0.10 2.19 4.67 -51.93 -0.24 1.95 16 21 H 0.02 0.34 7.93 -51.93 -0.41 -0.07 16 22 H 0.05 1.04 5.69 -51.93 -0.30 0.74 16 23 H 0.03 0.53 7.86 -51.93 -0.41 0.12 16 24 H 0.04 0.74 7.88 -51.93 -0.41 0.33 16 25 H 0.09 1.88 5.09 -51.93 -0.26 1.62 16 26 H 0.05 0.76 6.45 -51.93 -0.33 0.43 16 27 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 29 H 0.08 1.82 6.03 -51.93 -0.31 1.50 16 30 H 0.08 1.46 6.55 -51.93 -0.34 1.12 16 31 H 0.11 2.85 6.52 -51.93 -0.34 2.51 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.08 2.10 6.59 -51.93 -0.34 1.75 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 261.80 15.07 3.95 3.95 Total: -1.00 -24.96 261.80 -7.58 -32.54 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.13 Total: 3.68 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 0.90 Total: -9.07 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.12 Total: -36.75 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: -7.10 SS G_CDS: -2.40 Total: -9.50 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -24.96 -7.58 -32.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931590123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.732 kcal (2) G-P(sol) polarization free energy of solvation -24.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds