Wall clock time and date at job start Sun Mar 29 2020 21:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46988 * 2 1 4 4 C 1.52996 * 109.47189 * 240.00311 * 2 1 3 5 5 C 1.53000 * 109.47209 * 119.99889 * 2 1 3 6 6 H 1.08997 * 109.46767 * 182.03901 * 5 2 1 7 7 C 1.53241 * 109.46469 * 62.05105 * 5 2 1 8 8 S 1.81739 * 108.79412 * 182.34230 * 7 5 2 9 9 C 1.81740 * 102.31097 * 54.53866 * 8 7 5 10 10 C 1.53238 * 108.79616 * 305.46065 * 9 8 7 11 11 N 1.46368 * 109.47093 * 302.03543 * 5 2 1 12 12 C 1.36946 * 119.64765 * 5.06366 * 11 5 2 13 13 H 1.07990 * 119.99995 * 319.00593 * 12 11 5 14 14 C 1.38809 * 119.99834 * 138.99741 * 12 11 5 15 15 N 1.31620 * 120.00393 * 351.98094 * 14 12 11 16 16 Si 1.86806 * 119.99974 * 171.97637 * 14 12 11 17 17 H 1.48496 * 109.46893 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46852 * 120.00124 * 16 14 12 19 19 H 1.48503 * 109.46941 * 240.00535 * 16 14 12 20 20 H 1.09006 * 109.47252 * 322.91724 * 1 2 3 21 21 H 1.09006 * 109.47302 * 82.91661 * 1 2 3 22 22 H 1.08999 * 109.47546 * 202.91719 * 1 2 3 23 23 H 1.08999 * 109.46865 * 206.99774 * 3 2 1 24 24 H 1.09004 * 109.47185 * 326.99955 * 3 2 1 25 25 H 1.09003 * 109.46567 * 86.99504 * 3 2 1 26 26 H 1.08999 * 109.47191 * 299.99976 * 4 2 1 27 27 H 1.09007 * 109.47224 * 59.99441 * 4 2 1 28 28 H 1.08994 * 109.47280 * 179.97438 * 4 2 1 29 29 H 1.09004 * 109.58227 * 302.13491 * 7 5 2 30 30 H 1.09004 * 109.58430 * 62.54556 * 7 5 2 31 31 H 1.09004 * 109.58201 * 65.25300 * 9 8 7 32 32 H 1.08997 * 109.58218 * 185.66725 * 9 8 7 33 33 H 1.08999 * 109.47139 * 177.66255 * 10 9 8 34 34 H 1.09002 * 109.46863 * 297.65431 * 10 9 8 35 35 H 0.97001 * 120.00516 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 3.1293 -0.6896 1.2676 7 6 1.5718 -2.1801 1.2235 8 16 2.1277 -3.0004 2.7470 9 6 1.4552 -1.9141 4.0396 10 6 1.9352 -0.4822 3.7801 11 7 1.5125 -0.0601 2.4438 12 6 0.6142 0.9649 2.3099 13 1 0.7515 1.7056 1.5362 14 6 -0.4730 1.0515 3.1686 15 7 -0.7300 0.0693 4.0062 16 14 -1.5712 2.5623 3.1356 17 1 -1.0716 3.5151 2.1121 18 1 -2.9597 2.1575 2.7987 19 1 -1.5556 3.2148 4.4695 20 1 -0.3634 0.8199 0.6197 21 1 -0.3634 0.1267 -1.0199 22 1 -0.3634 -0.9465 0.4002 23 1 3.0244 1.4799 -0.4665 24 1 1.3485 2.0725 -0.5597 25 1 2.1102 1.8030 1.0263 26 1 1.6767 -1.7488 -1.2493 27 1 1.6765 -0.2073 -2.1393 28 1 3.1299 -0.7208 -1.2495 29 1 0.4837 -2.2137 1.1667 30 1 2.0006 -2.6863 0.3586 31 1 0.3659 -1.9449 4.0124 32 1 1.8078 -2.2464 5.0159 33 1 1.5043 0.1862 4.5256 34 1 3.0227 -0.4461 3.8453 35 1 -1.4895 0.1300 4.6065 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931590123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:10 Heat of formation + Delta-G solvation = 20.002782 kcal Electronic energy + Delta-G solvation = -15744.435552 eV Core-core repulsion = 13483.342029 eV Total energy + Delta-G solvation = -2261.093523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.20277 -36.07927 -33.57733 -31.22069 -30.79231 -28.02972 -27.57592 -25.83577 -24.18685 -22.23171 -19.76214 -18.66159 -17.25747 -16.57605 -15.83873 -15.55425 -15.21992 -14.95216 -14.72391 -14.52941 -14.05249 -13.62267 -13.35837 -12.99579 -12.75409 -12.71085 -12.52187 -12.41604 -12.30847 -12.06352 -11.89470 -11.76767 -11.25860 -11.25374 -10.70385 -10.49820 -10.11633 -8.77621 -8.17334 -7.77194 -5.33994 1.16239 1.45737 1.52040 1.57209 1.83315 2.54116 3.39035 3.54214 4.04544 4.16007 4.34961 4.41440 4.51155 4.60470 4.68817 4.74707 4.82630 4.91705 4.96507 5.03265 5.08545 5.15173 5.25953 5.36880 5.41450 5.50212 5.57157 5.61948 5.78271 5.92217 6.00510 6.57727 7.27381 7.88780 8.45029 9.26710 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.015230 C = 0.010415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.794221 B = 1838.048880 C = 2687.893644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C -0.143 4.143 4 C -0.135 4.135 5 C 0.186 3.814 6 H 0.040 0.960 7 C -0.077 4.077 8 S -0.330 6.330 9 C -0.068 4.068 10 C 0.181 3.819 11 N -0.597 5.597 12 C -0.250 4.250 13 H 0.100 0.900 14 C -0.034 4.034 15 N -0.922 5.922 16 Si 0.940 3.060 17 H -0.263 1.263 18 H -0.300 1.300 19 H -0.299 1.299 20 H 0.074 0.926 21 H 0.042 0.958 22 H 0.027 0.973 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.021 0.979 35 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.725 -0.508 -7.010 8.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.052 4.052 3 C -0.200 4.200 4 C -0.192 4.192 5 C 0.078 3.922 6 H 0.058 0.942 7 C -0.227 4.227 8 S -0.103 6.103 9 C -0.218 4.218 10 C 0.054 3.946 11 N -0.320 5.320 12 C -0.380 4.380 13 H 0.117 0.883 14 C -0.231 4.231 15 N -0.567 5.567 16 Si 0.770 3.230 17 H -0.187 1.187 18 H -0.227 1.227 19 H -0.226 1.226 20 H 0.092 0.908 21 H 0.061 0.939 22 H 0.046 0.954 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.215 -1.474 -6.763 8.667 hybrid contribution -1.813 1.432 0.553 2.376 sum 3.402 -0.042 -6.210 7.081 Atomic orbital electron populations 1.22252 0.95066 1.02644 0.99428 1.20427 0.95721 0.95652 0.93430 1.22135 0.99902 0.95369 1.02618 1.21931 1.01011 0.99983 0.96291 1.20780 0.95264 0.88348 0.87795 0.94178 1.24102 1.02777 1.00988 0.94868 1.85970 1.75312 1.42646 1.06406 1.23872 1.04117 0.98025 0.95788 1.20516 0.93773 0.92094 0.88223 1.44093 1.49855 1.38232 0.99783 1.19972 1.00055 1.02242 1.15711 0.88288 1.25938 0.98086 0.98565 1.00493 1.70006 1.29434 1.31904 1.25400 0.85622 0.79094 0.81111 0.77196 1.18665 1.22709 1.22638 0.90788 0.93864 0.95365 0.92690 0.92983 0.91489 0.92722 0.91612 0.92033 0.91914 0.87324 0.89739 0.89729 0.92269 0.96062 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 7.60 71.98 0.55 -4.60 16 2 C -0.05 -1.70 0.54 -52.18 -0.03 -1.72 16 3 C -0.14 -4.68 7.69 71.99 0.55 -4.12 16 4 C -0.13 -3.56 7.81 71.98 0.56 -3.00 16 5 C 0.19 7.19 2.01 45.10 0.09 7.29 16 6 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 7 C -0.08 -2.95 5.25 72.06 0.38 -2.57 16 8 S -0.33 -13.29 22.29 -56.49 -1.26 -14.54 16 9 C -0.07 -3.00 6.46 72.06 0.47 -2.54 16 10 C 0.18 8.30 5.35 86.48 0.46 8.76 16 11 N -0.60 -27.01 2.57 -677.76 -1.74 -28.76 16 12 C -0.25 -11.90 4.86 84.03 0.41 -11.49 16 13 H 0.10 4.53 3.47 -2.92 -0.01 4.52 16 14 C -0.03 -1.75 4.89 84.86 0.41 -1.33 16 15 N -0.92 -49.77 9.91 21.65 0.21 -49.55 16 16 Si 0.94 42.02 29.54 68.60 2.03 44.04 16 17 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 19 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 20 H 0.07 3.17 4.67 -2.38 -0.01 3.15 16 21 H 0.04 1.39 7.93 -2.38 -0.02 1.37 16 22 H 0.03 1.16 5.69 -2.39 -0.01 1.14 16 23 H 0.05 1.54 7.86 -2.39 -0.02 1.53 16 24 H 0.05 1.60 7.88 -2.38 -0.02 1.58 16 25 H 0.07 2.56 5.09 -2.39 -0.01 2.55 16 26 H 0.05 1.41 6.45 -2.39 -0.02 1.39 16 27 H 0.06 1.54 8.12 -2.38 -0.02 1.52 16 28 H 0.06 1.48 8.11 -2.39 -0.02 1.46 16 29 H 0.06 2.69 6.03 -2.39 -0.01 2.67 16 30 H 0.11 3.55 6.55 -2.39 -0.02 3.53 16 31 H 0.08 4.29 6.52 -2.39 -0.02 4.28 16 32 H 0.08 3.42 8.14 -2.39 -0.02 3.41 16 33 H 0.06 3.00 6.59 -2.39 -0.02 2.99 16 34 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.24 13.17 8.31 -92.71 -0.77 12.40 16 Total: -1.00 -52.82 261.80 4.17 -48.65 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.07 Total: 15.49 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 3.86 Total: -15.33 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -1.53 Total: -78.31 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: -13.29 SS G_CDS: -1.26 Total: -14.54 kcal Total: -52.82 4.17 -48.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931590123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.657 kcal (2) G-P(sol) polarization free energy of solvation -52.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds