Wall clock time and date at job start Sun Mar 29 2020 21:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35285 * 126.21168 * 2 1 4 4 Br 1.89099 * 126.01906 * 0.02569 * 3 2 1 5 5 C 1.40207 * 107.96481 * 180.02562 * 3 2 1 6 6 N 1.30933 * 108.40604 * 0.02562 * 5 3 2 7 7 N 1.36329 * 126.21274 * 180.02562 * 2 1 3 8 8 C 1.37387 * 126.11809 * 359.97438 * 7 2 1 9 9 H 1.08003 * 119.99489 * 359.97438 * 8 7 2 10 10 C 1.38987 * 120.00514 * 179.97438 * 8 7 2 11 11 N 1.31291 * 119.99793 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00122 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47026 * 89.99917 * 12 10 8 14 14 H 1.48496 * 109.47075 * 210.00319 * 12 10 8 15 15 H 1.48508 * 109.47154 * 330.00060 * 12 10 8 16 16 H 1.09005 * 109.47403 * 269.97199 * 1 2 3 17 17 H 1.09001 * 109.47330 * 29.97266 * 1 2 3 18 18 H 1.09005 * 109.47379 * 149.97130 * 1 2 3 19 19 H 1.07998 * 125.79223 * 180.02562 * 5 3 2 20 20 H 0.96995 * 119.99664 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3061 1.0915 0.0000 4 35 1.7290 2.8923 0.0007 5 6 3.6377 0.6525 -0.0006 6 7 3.6413 -0.6568 -0.0015 7 7 2.3123 -1.0999 -0.0005 8 6 1.8953 -2.4090 -0.0006 9 1 0.8402 -2.6396 0.0002 10 6 2.8312 -3.4366 -0.0016 11 7 4.1138 -3.1563 -0.0021 12 14 2.2641 -5.2164 -0.0010 13 1 2.1123 -5.6880 -1.4009 14 1 3.2698 -6.0561 0.6979 15 1 0.9593 -5.3200 0.7005 16 1 -0.3634 -0.0005 1.0277 17 1 -0.3634 0.8902 -0.5134 18 1 -0.3634 -0.8898 -0.5143 19 1 4.5119 1.2867 -0.0004 20 1 4.7669 -3.8734 -0.0032 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002537506.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:38 Heat of formation + Delta-G solvation = 49.901543 kcal Electronic energy + Delta-G solvation = -9214.249546 eV Core-core repulsion = 7265.055944 eV Total energy + Delta-G solvation = -1949.193602 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 229.975 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.51662 -35.56069 -33.22536 -32.69246 -30.53846 -27.16315 -26.83929 -22.48512 -20.63631 -18.97319 -17.31536 -16.10186 -15.77169 -14.90581 -14.48968 -13.91648 -13.51724 -13.38955 -12.91480 -12.76173 -12.62597 -12.08280 -11.92731 -11.19934 -11.12545 -10.58345 -10.11642 -8.98344 -8.53073 -6.35154 1.13129 1.21922 1.40720 1.56431 1.67630 2.10509 2.13465 2.80887 3.02783 4.22963 4.41863 4.58450 4.83392 4.90169 5.01716 5.19992 5.47211 5.85308 6.08787 6.64610 7.36038 7.54056 8.46346 Molecular weight = 229.97amu Principal moments of inertia in cm(-1) A = 0.082419 B = 0.008613 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.646873 B = 3250.247144 C = 3574.749886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.013 4.013 3 C -0.270 4.270 4 Br -0.037 7.037 5 C -0.023 4.023 6 N -0.308 5.308 7 N -0.165 5.165 8 C -0.355 4.355 9 H 0.138 0.862 10 C -0.002 4.002 11 N -0.821 5.821 12 Si 1.016 2.984 13 H -0.263 1.263 14 H -0.274 1.274 15 H -0.245 1.245 16 H 0.075 0.925 17 H 0.086 0.914 18 H 0.069 0.931 19 H 0.177 0.823 20 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 5.403 0.016 8.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.147 4.147 3 C -0.363 4.363 4 Br 0.045 6.955 5 C -0.201 4.201 6 N -0.137 5.137 7 N 0.067 4.933 8 C -0.486 4.486 9 H 0.156 0.844 10 C -0.214 4.214 11 N -0.448 5.448 12 Si 0.835 3.165 13 H -0.188 1.188 14 H -0.199 1.199 15 H -0.168 1.168 16 H 0.094 0.906 17 H 0.105 0.895 18 H 0.088 0.912 19 H 0.194 0.806 20 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.916 4.862 0.021 7.658 hybrid contribution 0.039 -0.210 -0.008 0.214 sum -5.877 4.652 0.013 7.495 Atomic orbital electron populations 1.20189 0.85867 1.03324 1.02842 1.21216 0.95654 0.86029 1.11764 1.21045 0.94205 0.90152 1.30912 1.96244 1.90159 1.10317 1.98770 1.23904 0.96605 0.93230 1.06322 1.78180 0.97930 1.10100 1.27473 1.45081 1.02930 1.05218 1.40023 1.20609 0.95787 0.78105 1.54053 0.84418 1.26849 0.94587 1.06104 0.93872 1.70352 1.02085 1.35547 1.36829 0.84627 0.79177 0.73327 0.79362 1.18790 1.19929 1.16830 0.90602 0.89540 0.91216 0.80555 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.31 9.85 71.23 0.70 -1.61 14 2 C -0.01 -0.62 6.93 41.18 0.29 -0.33 14 3 C -0.27 -12.36 6.53 22.07 0.14 -12.22 14 4 Br -0.04 -1.30 33.48 -20.37 -0.68 -1.98 14 5 C -0.02 -1.16 12.01 85.31 1.02 -0.14 14 6 N -0.31 -17.78 10.41 -56.75 -0.59 -18.37 14 7 N -0.17 -9.07 3.74 -178.65 -0.67 -9.74 14 8 C -0.35 -18.57 9.97 84.00 0.84 -17.73 14 9 H 0.14 6.35 7.07 -2.91 -0.02 6.33 14 10 C 0.00 -0.10 5.50 84.95 0.47 0.37 14 11 N -0.82 -45.94 11.82 21.66 0.26 -45.69 14 12 Si 1.02 37.76 29.55 68.60 2.03 39.79 14 13 H -0.26 -9.42 7.11 99.48 0.71 -8.72 14 14 H -0.27 -10.04 7.11 99.48 0.71 -9.34 14 15 H -0.25 -8.33 7.11 99.48 0.71 -7.62 14 16 H 0.08 2.50 8.14 -2.38 -0.02 2.48 14 17 H 0.09 2.75 7.77 -2.39 -0.02 2.73 14 18 H 0.07 2.39 7.38 -2.38 -0.02 2.37 14 19 H 0.18 7.70 8.06 -2.91 -0.02 7.68 14 20 H 0.28 14.28 8.31 -92.71 -0.77 13.51 14 Total: -1.00 -63.29 207.82 5.05 -58.23 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.25 Total: 9.43 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 3.46 Total: -31.66 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -1.00 Total: -73.80 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Atomic # 35 Polarization: -1.30 SS G_CDS: -0.68 Total: -1.98 kcal Total: -63.29 5.05 -58.23 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002537506.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.134 kcal (2) G-P(sol) polarization free energy of solvation -63.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds