Wall clock time and date at job start Sun Mar 29 2020 21:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47074 * 300.00488 * 3 2 1 6 6 H 1.48505 * 109.46997 * 60.00482 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.38217 * 119.98796 * 269.71938 * 10 9 7 12 12 C 1.38353 * 120.01302 * 179.76612 * 11 10 9 13 13 Cl 1.73604 * 120.00920 * 180.27926 * 12 11 10 14 14 C 1.38327 * 119.98737 * 0.54085 * 12 11 10 15 15 C 1.38334 * 119.97451 * 359.71742 * 14 12 11 16 16 Cl 1.73595 * 120.00688 * 179.97438 * 15 14 12 17 17 C 1.38215 * 119.98370 * 90.00149 * 10 9 7 18 18 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.46670 * 60.00337 * 9 7 2 20 20 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 21 21 H 1.08009 * 119.99089 * 0.02562 * 11 10 9 22 22 H 1.08000 * 120.01594 * 179.69947 * 14 12 11 23 23 H 1.08003 * 120.00001 * 359.97438 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 6 2.6750 -4.1734 -1.1977 12 6 3.5778 -5.2218 -1.1983 13 17 4.1416 -5.8812 -2.7020 14 6 4.0271 -5.7480 -0.0005 15 6 3.5778 -5.2218 1.1974 16 17 4.1405 -5.8821 2.7010 17 6 2.6794 -4.1696 1.1966 18 1 -0.4850 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 2.3207 -3.7654 -2.1328 22 1 4.7281 -6.5696 -0.0005 23 1 2.3286 -3.7587 2.1318 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036204148.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:55 Heat of formation + Delta-G solvation = -9.795282 kcal Electronic energy + Delta-G solvation = -11214.899752 eV Core-core repulsion = 8885.961600 eV Total energy + Delta-G solvation = -2328.938151 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.996 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.04782 -36.48914 -36.11158 -33.52524 -31.40541 -30.19135 -27.32387 -23.58756 -22.32137 -20.74813 -16.76800 -16.35623 -15.42769 -15.29326 -14.53966 -14.00042 -13.58510 -12.75275 -12.35261 -12.10800 -11.71111 -11.68030 -11.14141 -11.12537 -10.77216 -10.65410 -10.58342 -10.57375 -9.75342 -9.55760 -8.53387 -8.35056 -8.18878 -6.15383 -4.20241 1.42342 1.57509 2.07858 2.56655 3.24264 3.32404 3.37075 3.94208 4.37621 5.12730 5.20241 5.40647 5.45183 5.76023 5.82666 6.20838 6.40945 6.59714 6.77036 7.10294 7.37948 7.55846 7.79817 8.14837 8.84624 9.44816 10.94572 Molecular weight = 230.00amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.007809 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.134734 B = 3584.688779 C = 4358.844319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.048 3.952 10 C -0.008 4.008 11 C -0.109 4.109 12 C -0.022 4.022 13 Cl -0.078 7.078 14 C -0.134 4.134 15 C -0.022 4.022 16 Cl -0.078 7.078 17 C -0.109 4.109 18 H 0.263 0.737 19 H 0.036 0.964 20 H 0.036 0.964 21 H 0.137 0.863 22 H 0.133 0.867 23 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.257 -10.351 0.002 12.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.011 3.989 10 C -0.009 4.009 11 C -0.128 4.128 12 C -0.049 4.049 13 Cl -0.050 7.050 14 C -0.153 4.153 15 C -0.049 4.049 16 Cl -0.049 7.049 17 C -0.128 4.128 18 H 0.073 0.927 19 H 0.054 0.946 20 H 0.054 0.946 21 H 0.154 0.846 22 H 0.151 0.849 23 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.205 -10.354 0.001 12.071 hybrid contribution 0.592 0.810 0.000 1.003 sum 6.797 -9.544 0.001 11.717 Atomic orbital electron populations 1.69956 1.06046 1.26986 1.49964 1.25000 0.94906 0.99362 0.94874 0.86452 0.80155 0.83250 0.77732 1.19582 1.20836 1.20831 1.21040 0.93143 0.89563 1.51780 0.92224 1.18436 0.92282 0.89029 0.99139 1.20677 0.95355 0.94496 0.90333 1.21155 0.96864 0.94888 0.99912 1.20708 0.99968 0.98060 0.86151 1.98340 1.88605 1.85438 1.32573 1.20580 1.03004 1.02311 0.89401 1.20712 1.00015 0.98019 0.86152 1.98340 1.88638 1.85405 1.32568 1.21155 0.96894 0.94841 0.99916 0.92703 0.94604 0.94612 0.84561 0.84918 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.29 55.43 0.74 -24.59 14 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 14 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 14 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 14 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 14 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 14 7 C -0.52 -13.79 9.09 -34.44 -0.31 -14.10 14 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 14 9 C 0.05 1.15 5.10 -29.03 -0.15 1.00 14 10 C -0.01 -0.16 5.07 -104.64 -0.53 -0.69 14 11 C -0.11 -2.00 9.48 -39.55 -0.38 -2.38 14 12 C -0.02 -0.36 6.32 -39.51 -0.25 -0.61 14 13 Cl -0.08 -1.11 28.96 -51.86 -1.50 -2.62 14 14 C -0.13 -2.06 9.61 -39.51 -0.38 -2.44 14 15 C -0.02 -0.36 6.32 -39.50 -0.25 -0.61 14 16 Cl -0.08 -1.11 28.96 -51.86 -1.50 -2.61 14 17 C -0.11 -2.00 9.48 -39.54 -0.38 -2.38 14 18 H 0.26 7.07 8.31 -40.82 -0.34 6.73 14 19 H 0.04 0.90 8.08 -51.93 -0.42 0.48 14 20 H 0.04 0.90 8.08 -51.93 -0.42 0.48 14 21 H 0.14 2.43 8.06 -52.48 -0.42 2.01 14 22 H 0.13 1.77 8.06 -52.49 -0.42 1.34 14 23 H 0.14 2.43 8.06 -52.48 -0.42 2.01 14 LS Contribution 244.39 15.07 3.68 3.68 Total: -1.00 -26.81 244.39 -7.97 -34.78 By element: Atomic # 1 Polarization: -2.22 SS G_CDS: -1.65 Total: -3.87 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -2.72 Total: -20.65 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.74 Total: -24.59 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -3.00 Total: -5.23 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -26.81 -7.97 -34.78 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036204148.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.984 kcal (2) G-P(sol) polarization free energy of solvation -26.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds