Wall clock time and date at job start Sun Mar 29 2020 21:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47074 * 300.00488 * 3 2 1 6 6 H 1.48505 * 109.46997 * 60.00482 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.38217 * 119.98796 * 269.71938 * 10 9 7 12 12 C 1.38353 * 120.01302 * 179.76612 * 11 10 9 13 13 Cl 1.73604 * 120.00920 * 180.27926 * 12 11 10 14 14 C 1.38327 * 119.98737 * 0.54085 * 12 11 10 15 15 C 1.38334 * 119.97451 * 359.71742 * 14 12 11 16 16 Cl 1.73595 * 120.00688 * 179.97438 * 15 14 12 17 17 C 1.38215 * 119.98370 * 90.00149 * 10 9 7 18 18 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.46670 * 60.00337 * 9 7 2 20 20 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 21 21 H 1.08009 * 119.99089 * 0.02562 * 11 10 9 22 22 H 1.08000 * 120.01594 * 179.69947 * 14 12 11 23 23 H 1.08003 * 120.00001 * 359.97438 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 6 2.6750 -4.1734 -1.1977 12 6 3.5778 -5.2218 -1.1983 13 17 4.1416 -5.8812 -2.7020 14 6 4.0271 -5.7480 -0.0005 15 6 3.5778 -5.2218 1.1974 16 17 4.1405 -5.8821 2.7010 17 6 2.6794 -4.1696 1.1966 18 1 -0.4850 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 2.3207 -3.7654 -2.1328 22 1 4.7281 -6.5696 -0.0005 23 1 2.3286 -3.7587 2.1318 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036204148.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:55 Heat of formation + Delta-G solvation = -22.517620 kcal Electronic energy + Delta-G solvation = -11215.451434 eV Core-core repulsion = 8885.961600 eV Total energy + Delta-G solvation = -2329.489833 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.996 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.44246 -37.71572 -37.38666 -35.41641 -33.11676 -31.56131 -29.11905 -25.44954 -23.69213 -22.30869 -18.56835 -18.01946 -16.83129 -16.74422 -16.36885 -15.30799 -14.98850 -14.44241 -14.15672 -13.46802 -13.30781 -13.21726 -12.79425 -12.65004 -12.40875 -12.22340 -12.05560 -11.90575 -11.51450 -11.40591 -10.61812 -9.68163 -9.67377 -8.22431 -6.34667 0.04670 0.19114 0.80644 1.28905 1.40416 1.42192 1.54397 2.36933 2.57617 3.10490 3.80465 4.03502 4.06742 4.34309 4.38422 4.79537 5.01217 5.14650 5.16363 5.31639 5.64643 5.72008 5.78531 6.12498 6.77423 7.34338 8.87588 Molecular weight = 230.00amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.007809 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.134734 B = 3584.688779 C = 4358.844319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.056 3.944 10 C -0.032 4.032 11 C -0.116 4.116 12 C -0.020 4.020 13 Cl -0.055 7.055 14 C -0.118 4.118 15 C -0.021 4.021 16 Cl -0.054 7.054 17 C -0.116 4.116 18 H 0.266 0.734 19 H 0.014 0.986 20 H 0.014 0.986 21 H 0.133 0.867 22 H 0.163 0.837 23 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.063 -11.161 0.001 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.032 4.032 11 C -0.135 4.135 12 C -0.047 4.047 13 Cl -0.026 7.026 14 C -0.137 4.137 15 C -0.047 4.047 16 Cl -0.025 7.025 17 C -0.135 4.135 18 H 0.075 0.925 19 H 0.033 0.967 20 H 0.033 0.967 21 H 0.151 0.849 22 H 0.180 0.820 23 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.021 -11.178 0.001 13.758 hybrid contribution 0.071 0.940 0.000 0.943 sum 8.092 -10.238 0.001 13.049 Atomic orbital electron populations 1.70065 1.07530 1.27965 1.51040 1.25848 0.95712 1.02905 0.94530 0.85438 0.78994 0.78998 0.77901 1.18972 1.20281 1.20267 1.21362 0.93172 0.90978 1.51258 0.92533 1.18153 0.92647 0.90267 0.97002 1.20265 0.96257 0.94645 0.92055 1.21101 0.97572 0.95725 0.99069 1.20699 0.99161 0.97297 0.87580 1.98351 1.88156 1.84891 1.31157 1.20909 1.02201 1.02099 0.88525 1.20702 0.99209 0.97251 0.87582 1.98350 1.88190 1.84856 1.31151 1.21101 0.97600 0.95687 0.99072 0.92499 0.96727 0.96736 0.84887 0.81979 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.82 13.29 21.45 0.28 -53.53 14 2 C 0.01 0.49 5.46 84.65 0.46 0.95 14 3 Si 0.96 43.02 29.54 68.60 2.03 45.05 14 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 14 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 14 6 H -0.28 -12.08 7.11 99.48 0.71 -11.38 14 7 C -0.53 -28.84 9.09 25.60 0.23 -28.61 14 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 14 9 C 0.06 2.82 5.10 29.10 0.15 2.97 14 10 C -0.03 -1.29 5.07 -19.87 -0.10 -1.39 14 11 C -0.12 -4.20 9.48 22.29 0.21 -3.99 14 12 C -0.02 -0.62 6.32 22.32 0.14 -0.48 14 13 Cl -0.05 -1.41 28.96 -2.72 -0.08 -1.49 14 14 C -0.12 -3.31 9.61 22.31 0.21 -3.10 14 15 C -0.02 -0.63 6.32 22.32 0.14 -0.49 14 16 Cl -0.05 -1.41 28.96 -2.72 -0.08 -1.49 14 17 C -0.12 -4.20 9.48 22.29 0.21 -3.99 14 18 H 0.27 14.51 8.31 -92.71 -0.77 13.74 14 19 H 0.01 0.77 8.08 -2.39 -0.02 0.75 14 20 H 0.01 0.76 8.08 -2.39 -0.02 0.74 14 21 H 0.13 4.80 8.06 -2.91 -0.02 4.78 14 22 H 0.16 3.61 8.06 -2.91 -0.02 3.58 14 23 H 0.13 4.80 8.06 -2.91 -0.02 4.78 14 Total: -1.00 -56.81 244.39 5.03 -51.78 By element: Atomic # 1 Polarization: -3.39 SS G_CDS: 1.22 Total: -2.17 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 1.66 Total: -38.13 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.28 Total: -53.53 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.16 Total: -2.98 kcal Total: -56.81 5.03 -51.78 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036204148.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.258 kcal (2) G-P(sol) polarization free energy of solvation -56.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds