Wall clock time and date at job start Sun Mar 29 2020 21:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38251 * 119.99859 * 264.71996 * 10 9 7 12 12 C 1.38221 * 120.04122 * 179.77212 * 11 10 9 13 13 C 1.38245 * 120.03099 * 0.50626 * 12 11 10 14 14 C 1.38301 * 120.00534 * 359.75158 * 13 12 11 15 15 Cl 1.73605 * 120.02027 * 179.97438 * 14 13 12 16 16 C 1.38294 * 120.00212 * 85.00127 * 10 9 7 17 17 Cl 1.73607 * 120.01994 * 359.97438 * 16 10 9 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08009 * 119.97810 * 0.02562 * 11 10 9 22 22 H 1.07993 * 119.98715 * 180.27686 * 12 11 10 23 23 H 1.08003 * 120.00007 * 179.76870 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5957 -4.2363 -1.2052 12 6 3.4975 -5.2839 -1.2113 13 6 4.0268 -5.7480 -0.0215 14 6 3.6582 -5.1608 1.1752 15 17 4.3222 -5.7437 2.6696 16 6 2.7588 -4.1078 1.1807 17 17 2.2950 -3.3695 2.6820 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 2.1796 -3.8771 -2.1349 22 1 3.7858 -5.7425 -2.1455 23 1 4.7285 -6.5690 -0.0265 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036204152.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:57 Heat of formation + Delta-G solvation = -5.269669 kcal Electronic energy + Delta-G solvation = -11473.794975 eV Core-core repulsion = 9145.053069 eV Total energy + Delta-G solvation = -2328.741906 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.996 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.97232 -36.23862 -35.75357 -33.50074 -31.34708 -30.10552 -27.20167 -23.50558 -22.24258 -20.70740 -16.72422 -16.30525 -15.44704 -15.21897 -14.46967 -13.69657 -13.58456 -12.78570 -12.26549 -11.77550 -11.59485 -11.25918 -11.08562 -10.95719 -10.83131 -10.58427 -10.55990 -10.10044 -9.64979 -9.49977 -8.43286 -8.26002 -8.05065 -6.06443 -4.09669 1.45072 1.66542 2.29472 2.85334 3.31722 3.35805 3.39223 3.99014 4.44147 5.09558 5.28308 5.33332 5.58123 5.72588 5.84485 6.23932 6.48269 6.62560 6.78510 7.15211 7.46381 7.62074 7.87795 8.23725 8.92748 9.53586 11.03810 Molecular weight = 230.00amu Principal moments of inertia in cm(-1) A = 0.033706 B = 0.008848 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.505380 B = 3163.622399 C = 3544.816520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.046 3.954 10 C -0.016 4.016 11 C -0.112 4.112 12 C -0.108 4.108 13 C -0.131 4.131 14 C -0.032 4.032 15 Cl -0.072 7.072 16 C -0.034 4.034 17 Cl -0.046 7.046 18 H 0.263 0.737 19 H 0.043 0.957 20 H 0.033 0.967 21 H 0.133 0.867 22 H 0.128 0.872 23 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.104 -10.196 0.535 11.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.009 3.991 10 C -0.017 4.017 11 C -0.130 4.130 12 C -0.127 4.127 13 C -0.150 4.150 14 C -0.059 4.059 15 Cl -0.043 7.043 16 C -0.061 4.061 17 Cl -0.017 7.017 18 H 0.072 0.928 19 H 0.061 0.939 20 H 0.052 0.948 21 H 0.151 0.849 22 H 0.146 0.854 23 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.959 -10.057 0.816 11.718 hybrid contribution 0.546 0.944 0.254 1.120 sum 6.506 -9.113 1.069 11.248 Atomic orbital electron populations 1.69939 1.05976 1.26961 1.50214 1.24941 0.94850 0.99104 0.95073 0.86616 0.79582 0.82865 0.78775 1.20190 1.21219 1.20083 1.20847 0.92818 0.89405 1.51410 0.92590 1.18480 0.92343 0.88916 0.99351 1.20680 0.95914 0.95397 0.89700 1.21210 0.97916 0.95716 0.98163 1.21099 0.97200 0.97135 0.97250 1.20754 1.02376 1.01511 0.90391 1.20764 0.99482 0.97848 0.87798 1.98338 1.84683 1.87892 1.33418 1.20706 0.99953 0.96090 0.89365 1.98357 1.91020 1.81915 1.30425 0.92752 0.93883 0.94848 0.84897 0.85407 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.08 14 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 14 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 14 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 14 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 14 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 7 C -0.51 -13.75 9.09 -34.44 -0.31 -14.06 14 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 14 9 C 0.05 1.14 4.62 -29.03 -0.13 1.00 14 10 C -0.02 -0.33 5.07 -104.60 -0.53 -0.86 14 11 C -0.11 -1.97 9.68 -39.58 -0.38 -2.35 14 12 C -0.11 -1.58 10.04 -39.58 -0.40 -1.98 14 13 C -0.13 -1.95 9.83 -39.56 -0.39 -2.33 14 14 C -0.03 -0.54 6.32 -39.47 -0.25 -0.79 14 15 Cl -0.07 -1.11 27.96 -51.86 -1.45 -2.56 14 16 C -0.03 -0.67 6.32 -39.47 -0.25 -0.92 14 17 Cl -0.05 -0.95 26.41 -51.86 -1.37 -2.31 14 18 H 0.26 7.23 8.31 -40.82 -0.34 6.89 14 19 H 0.04 1.14 7.13 -51.93 -0.37 0.77 14 20 H 0.03 0.86 8.05 -51.93 -0.42 0.44 14 21 H 0.13 2.18 8.06 -52.48 -0.42 1.75 14 22 H 0.13 1.42 8.06 -52.49 -0.42 0.99 14 23 H 0.13 1.55 8.06 -52.48 -0.42 1.13 14 LS Contribution 240.35 15.07 3.62 3.62 Total: -1.00 -28.35 240.35 -7.82 -36.17 By element: Atomic # 1 Polarization: -3.93 SS G_CDS: -1.60 Total: -5.53 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -2.74 Total: -20.67 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.74 Total: -25.08 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -2.82 Total: -4.88 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.35 -7.82 -36.17 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036204152.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.903 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds