Wall clock time and date at job start Sun Mar 29 2020 21:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38251 * 119.99859 * 264.71996 * 10 9 7 12 12 C 1.38221 * 120.04122 * 179.77212 * 11 10 9 13 13 C 1.38245 * 120.03099 * 0.50626 * 12 11 10 14 14 C 1.38301 * 120.00534 * 359.75158 * 13 12 11 15 15 Cl 1.73605 * 120.02027 * 179.97438 * 14 13 12 16 16 C 1.38294 * 120.00212 * 85.00127 * 10 9 7 17 17 Cl 1.73607 * 120.01994 * 359.97438 * 16 10 9 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08009 * 119.97810 * 0.02562 * 11 10 9 22 22 H 1.07993 * 119.98715 * 180.27686 * 12 11 10 23 23 H 1.08003 * 120.00007 * 179.76870 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5957 -4.2363 -1.2052 12 6 3.4975 -5.2839 -1.2113 13 6 4.0268 -5.7480 -0.0215 14 6 3.6582 -5.1608 1.1752 15 17 4.3222 -5.7437 2.6696 16 6 2.7588 -4.1078 1.1807 17 17 2.2950 -3.3695 2.6820 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 2.1796 -3.8771 -2.1349 22 1 3.7858 -5.7425 -2.1455 23 1 4.7285 -6.5690 -0.0265 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036204152.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:56 Heat of formation + Delta-G solvation = -20.058709 kcal Electronic energy + Delta-G solvation = -11474.436276 eV Core-core repulsion = 9145.053069 eV Total energy + Delta-G solvation = -2329.383207 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.996 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.34884 -37.52247 -37.25749 -35.42212 -33.07621 -31.43882 -29.00099 -25.37314 -23.57923 -22.25209 -18.52236 -17.98153 -16.85795 -16.72115 -16.26471 -15.06491 -14.96486 -14.43369 -14.08966 -13.49741 -13.15448 -12.78162 -12.70497 -12.56415 -12.32108 -12.26807 -12.15856 -11.69096 -11.50835 -11.31840 -10.55564 -9.60406 -9.54403 -8.17394 -6.27485 0.10764 0.30812 0.96428 1.40653 1.41732 1.42763 1.50299 2.40331 2.67170 3.15517 3.82091 4.08028 4.35582 4.35874 4.49189 4.89986 5.07609 5.20500 5.37351 5.40281 5.75702 5.78625 5.82121 6.17805 6.81872 7.39339 8.92470 Molecular weight = 230.00amu Principal moments of inertia in cm(-1) A = 0.033706 B = 0.008848 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.505380 B = 3163.622399 C = 3544.816520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.051 0.949 9 C 0.056 3.944 10 C -0.050 4.050 11 C -0.118 4.118 12 C -0.088 4.088 13 C -0.115 4.115 14 C -0.040 4.040 15 Cl -0.058 7.058 16 C -0.053 4.053 17 Cl -0.066 7.066 18 H 0.264 0.736 19 H 0.016 0.984 20 H 0.013 0.987 21 H 0.139 0.861 22 H 0.176 0.824 23 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.155 -11.439 -0.414 14.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.069 0.931 9 C 0.019 3.981 10 C -0.051 4.051 11 C -0.136 4.136 12 C -0.106 4.106 13 C -0.133 4.133 14 C -0.067 4.067 15 Cl -0.029 7.029 16 C -0.081 4.081 17 Cl -0.037 7.037 18 H 0.073 0.927 19 H 0.034 0.966 20 H 0.031 0.969 21 H 0.157 0.843 22 H 0.193 0.807 23 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.021 -11.311 -0.135 13.867 hybrid contribution -0.044 1.200 0.532 1.313 sum 7.977 -10.111 0.397 12.885 Atomic orbital electron populations 1.70056 1.07433 1.27765 1.51451 1.25760 0.95631 1.02565 0.94859 0.85649 0.78447 0.78868 0.79033 1.19051 1.20732 1.19873 1.21118 0.92666 0.90769 1.50567 0.93106 1.18156 0.92713 0.90286 0.96957 1.20385 0.97088 0.95832 0.91753 1.21386 0.98637 0.96554 0.97070 1.21555 0.94759 0.95128 0.99186 1.21291 1.01528 1.01296 0.89207 1.20952 0.99014 0.97289 0.89468 1.98343 1.84241 1.87481 1.32820 1.20816 1.01469 0.97496 0.88306 1.98339 1.91381 1.82495 1.31508 0.92719 0.96604 0.96881 0.84286 0.80685 0.81245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.03 13.29 21.45 0.28 -54.75 14 2 C 0.01 0.57 5.46 84.66 0.46 1.04 14 3 Si 0.96 44.12 29.54 68.60 2.03 46.15 14 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 14 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 14 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 14 7 C -0.51 -28.45 9.09 25.60 0.23 -28.22 14 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 14 9 C 0.06 2.88 4.62 29.10 0.13 3.01 14 10 C -0.05 -2.08 5.07 -19.85 -0.10 -2.18 14 11 C -0.12 -3.96 9.68 22.27 0.22 -3.74 14 12 C -0.09 -2.19 10.04 22.27 0.22 -1.97 14 13 C -0.11 -2.89 9.83 22.29 0.22 -2.67 14 14 C -0.04 -1.28 6.32 22.34 0.14 -1.14 14 15 Cl -0.06 -1.66 27.96 -2.72 -0.08 -1.73 14 16 C -0.05 -2.11 6.32 22.34 0.14 -1.97 14 17 Cl -0.07 -2.75 26.41 -2.72 -0.07 -2.83 14 18 H 0.26 14.84 8.31 -92.70 -0.77 14.07 14 19 H 0.02 0.88 7.13 -2.38 -0.02 0.86 14 20 H 0.01 0.70 8.05 -2.39 -0.02 0.68 14 21 H 0.14 4.38 8.06 -2.91 -0.02 4.35 14 22 H 0.18 2.74 8.06 -2.91 -0.02 2.72 14 23 H 0.17 2.99 8.06 -2.91 -0.02 2.97 14 Total: -1.00 -62.41 240.35 5.05 -57.36 By element: Atomic # 1 Polarization: -7.56 SS G_CDS: 1.22 Total: -6.34 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 1.67 Total: -37.85 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.28 Total: -54.75 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 17 Polarization: -4.41 SS G_CDS: -0.15 Total: -4.56 kcal Total: -62.41 5.05 -57.36 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036204152.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.300 kcal (2) G-P(sol) polarization free energy of solvation -62.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds