Wall clock time and date at job start Sun Mar 29 2020 21:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00059 * 2 1 4 4 H 1.48498 * 109.47349 * 270.00457 * 3 2 1 5 5 H 1.48505 * 109.46841 * 29.99650 * 3 2 1 6 6 H 1.48497 * 109.47340 * 149.99710 * 3 2 1 7 7 C 1.37874 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00227 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00289 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.47392 * 179.97438 * 9 7 2 11 11 C 1.38335 * 120.01238 * 89.99585 * 10 9 7 12 12 Cl 1.73594 * 120.00730 * 359.70413 * 11 10 9 13 13 C 1.38366 * 119.98539 * 179.97438 * 11 10 9 14 14 C 1.38221 * 120.00990 * 0.02562 * 13 11 10 15 15 C 1.38216 * 120.03026 * 359.97438 * 14 13 11 16 16 C 1.38329 * 120.01281 * 269.97248 * 10 9 7 17 17 Cl 1.73600 * 120.00459 * 0.02562 * 16 10 9 18 18 H 0.96991 * 120.00117 * 0.02562 * 1 2 3 19 19 H 1.08995 * 109.47466 * 59.99328 * 9 7 2 20 20 H 1.09010 * 109.46962 * 299.99728 * 9 7 2 21 21 H 1.07991 * 119.98945 * 179.97438 * 13 11 10 22 22 H 1.07998 * 119.98223 * 180.02562 * 14 13 11 23 23 H 1.08002 * 119.99587 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6148 -0.0001 11 6 4.2450 -3.2669 -1.1980 12 17 3.9490 -2.4514 -2.7016 13 6 4.7068 -4.5713 -1.1975 14 6 4.9366 -5.2227 -0.0003 15 6 4.7060 -4.5717 1.1969 16 6 4.2447 -3.2672 1.1977 17 17 3.9549 -2.4496 2.7014 18 1 -0.4850 0.8400 -0.0004 19 1 3.8746 -0.6807 0.8904 20 1 3.8752 -0.6796 -0.8896 21 1 4.8868 -5.0805 -2.1326 22 1 5.2975 -6.2407 -0.0004 23 1 4.8854 -5.0814 2.1320 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039269047.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:52 Heat of formation + Delta-G solvation = -15.838901 kcal Electronic energy + Delta-G solvation = -11620.012348 eV Core-core repulsion = 9290.812125 eV Total energy + Delta-G solvation = -2329.200222 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.996 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.38978 -37.53510 -37.03856 -35.44555 -33.38102 -31.45728 -29.41701 -25.01343 -23.62896 -22.10615 -18.96871 -18.08777 -16.95553 -16.58011 -16.06073 -15.17819 -14.98262 -14.70142 -14.03848 -13.70582 -13.28722 -13.16252 -12.72450 -12.45462 -12.26394 -12.00569 -11.94011 -11.71768 -11.59471 -11.35032 -10.73301 -9.59378 -9.52341 -8.25632 -6.27096 0.11657 0.28331 1.09701 1.34268 1.35683 1.46297 1.48074 2.36109 2.60840 3.09668 3.90333 4.03491 4.08253 4.37395 4.56865 4.77440 4.93848 5.08060 5.26620 5.30022 5.52695 5.57434 5.76529 6.27097 6.74554 7.34008 8.91055 Molecular weight = 230.00amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.012544 C = 0.009232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.721611 B = 2231.653408 C = 3032.237335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.017 3.983 3 Si 0.929 3.071 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.489 4.489 8 H 0.030 0.970 9 C 0.017 3.983 10 C -0.058 4.058 11 C -0.045 4.045 12 Cl -0.070 7.070 13 C -0.105 4.105 14 C -0.100 4.100 15 C -0.105 4.105 16 C -0.045 4.045 17 Cl -0.070 7.070 18 H 0.265 0.735 19 H 0.035 0.965 20 H 0.033 0.967 21 H 0.162 0.838 22 H 0.183 0.817 23 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.870 -9.314 0.021 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.180 4.180 3 Si 0.752 3.248 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.527 4.527 8 H 0.048 0.952 9 C -0.021 4.021 10 C -0.059 4.059 11 C -0.072 4.072 12 Cl -0.041 7.041 13 C -0.124 4.124 14 C -0.118 4.118 15 C -0.124 4.124 16 C -0.072 4.072 17 Cl -0.041 7.041 18 H 0.074 0.926 19 H 0.054 0.946 20 H 0.051 0.949 21 H 0.180 0.820 22 H 0.200 0.800 23 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 12.672 -9.048 0.025 15.571 hybrid contribution -0.433 1.262 -0.022 1.334 sum 12.239 -7.786 0.003 14.506 Atomic orbital electron populations 1.70024 1.07965 1.27848 1.52949 1.25702 0.95352 1.02465 0.94448 0.85969 0.79915 0.79596 0.79275 1.19188 1.20838 1.17125 1.20764 0.89587 0.92741 1.49586 0.95212 1.18730 0.95361 0.89895 0.98077 1.19912 0.96312 0.98403 0.91291 1.20900 1.05059 0.94965 0.86307 1.98339 1.94768 1.79928 1.31090 1.21471 0.98315 0.91307 1.01277 1.21421 0.99308 1.01519 0.89579 1.21469 0.98303 0.91319 1.01281 1.20897 1.05073 0.94949 0.86306 1.98338 1.94885 1.79826 1.31082 0.92580 0.94640 0.94893 0.82044 0.79991 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.69 13.96 21.45 0.30 -59.39 14 2 C 0.02 1.02 5.47 84.65 0.46 1.48 14 3 Si 0.93 44.84 27.47 68.60 1.88 46.73 14 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 14 5 H -0.28 -13.39 7.11 99.48 0.71 -12.68 14 6 H -0.25 -11.22 6.54 99.48 0.65 -10.57 14 7 C -0.49 -28.08 9.65 25.60 0.25 -27.83 14 8 H 0.03 1.92 7.98 -2.91 -0.02 1.89 14 9 C 0.02 0.80 3.37 29.10 0.10 0.90 14 10 C -0.06 -2.38 5.08 -19.82 -0.10 -2.48 14 11 C -0.05 -1.64 6.31 22.32 0.14 -1.49 14 12 Cl -0.07 -2.59 27.30 -2.72 -0.07 -2.66 14 13 C -0.11 -2.78 9.83 22.30 0.22 -2.56 14 14 C -0.10 -2.19 10.04 22.26 0.22 -1.97 14 15 C -0.11 -2.78 9.83 22.29 0.22 -2.56 14 16 C -0.05 -1.64 6.31 22.32 0.14 -1.49 14 17 Cl -0.07 -2.59 27.30 -2.72 -0.07 -2.67 14 18 H 0.27 15.67 8.31 -92.72 -0.77 14.90 14 19 H 0.04 1.71 5.96 -2.39 -0.01 1.70 14 20 H 0.03 1.57 6.34 -2.38 -0.02 1.56 14 21 H 0.16 3.22 8.06 -2.91 -0.02 3.20 14 22 H 0.18 2.22 8.06 -2.91 -0.02 2.20 14 23 H 0.16 3.22 8.06 -2.91 -0.02 3.20 14 Total: -1.00 -67.19 235.44 4.86 -62.34 By element: Atomic # 1 Polarization: -7.51 SS G_CDS: 1.17 Total: -6.33 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 1.65 Total: -38.01 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.30 Total: -59.39 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.73 kcal Atomic # 17 Polarization: -5.18 SS G_CDS: -0.15 Total: -5.33 kcal Total: -67.19 4.86 -62.34 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039269047.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.497 kcal (2) G-P(sol) polarization free energy of solvation -67.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds