Wall clock time and date at job start Sun Mar 29 2020 21:40:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86800 * 120.00059 * 2 1
4 4 H 1.48498 * 109.47349 * 270.00457 * 3 2 1
5 5 H 1.48505 * 109.46841 * 29.99650 * 3 2 1
6 6 H 1.48497 * 109.47340 * 149.99710 * 3 2 1
7 7 C 1.37874 * 120.00220 * 180.02562 * 2 1 3
8 8 H 1.08006 * 120.00227 * 359.97438 * 7 2 1
9 9 C 1.50700 * 120.00289 * 180.02562 * 7 2 1
10 10 C 1.50699 * 109.47392 * 179.97438 * 9 7 2
11 11 C 1.38335 * 120.01238 * 89.99585 * 10 9 7
12 12 Cl 1.73594 * 120.00730 * 359.70413 * 11 10 9
13 13 C 1.38366 * 119.98539 * 179.97438 * 11 10 9
14 14 C 1.38221 * 120.00990 * 0.02562 * 13 11 10
15 15 C 1.38216 * 120.03026 * 359.97438 * 14 13 11
16 16 C 1.38329 * 120.01281 * 269.97248 * 10 9 7
17 17 Cl 1.73600 * 120.00459 * 0.02562 * 16 10 9
18 18 H 0.96991 * 120.00117 * 0.02562 * 1 2 3
19 19 H 1.08995 * 109.47466 * 59.99328 * 9 7 2
20 20 H 1.09010 * 109.46962 * 299.99728 * 9 7 2
21 21 H 1.07991 * 119.98945 * 179.97438 * 13 11 10
22 22 H 1.07998 * 119.98223 * 180.02562 * 14 13 11
23 23 H 1.08002 * 119.99587 * 179.97438 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4465 2.6527 0.7000
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1940 -0.0005
8 1 1.4646 -2.1294 -0.0005
9 6 3.5116 -1.1940 0.0000
10 6 4.0139 -2.6148 -0.0001
11 6 4.2450 -3.2669 -1.1980
12 17 3.9490 -2.4514 -2.7016
13 6 4.7068 -4.5713 -1.1975
14 6 4.9366 -5.2227 -0.0003
15 6 4.7060 -4.5717 1.1969
16 6 4.2447 -3.2672 1.1977
17 17 3.9549 -2.4496 2.7014
18 1 -0.4850 0.8400 -0.0004
19 1 3.8746 -0.6807 0.8904
20 1 3.8752 -0.6796 -0.8896
21 1 4.8868 -5.0805 -2.1326
22 1 5.2975 -6.2407 -0.0004
23 1 4.8854 -5.0814 2.1320
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000039269047.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:40:52
Heat of formation + Delta-G solvation = -15.838901 kcal
Electronic energy + Delta-G solvation = -11620.012348 eV
Core-core repulsion = 9290.812125 eV
Total energy + Delta-G solvation = -2329.200222 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 229.996 amu
Computer time = 0.12 seconds
Orbital eigenvalues (eV)
-40.38978 -37.53510 -37.03856 -35.44555 -33.38102 -31.45728 -29.41701 -25.01343
-23.62896 -22.10615 -18.96871 -18.08777 -16.95553 -16.58011 -16.06073 -15.17819
-14.98262 -14.70142 -14.03848 -13.70582 -13.28722 -13.16252 -12.72450 -12.45462
-12.26394 -12.00569 -11.94011 -11.71768 -11.59471 -11.35032 -10.73301 -9.59378
-9.52341 -8.25632 -6.27096 0.11657 0.28331 1.09701 1.34268 1.35683
1.46297 1.48074 2.36109 2.60840 3.09668 3.90333 4.03491 4.08253
4.37395 4.56865 4.77440 4.93848 5.08060 5.26620 5.30022 5.52695
5.57434 5.76529 6.27097 6.74554 7.34008 8.91055
Molecular weight = 230.00amu
Principal moments of inertia in cm(-1)
A = 0.023952 B = 0.012544 C = 0.009232
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1168.721611 B = 2231.653408 C = 3032.237335
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.947 5.947
2 C 0.017 3.983
3 Si 0.929 3.071
4 H -0.267 1.267
5 H -0.283 1.283
6 H -0.248 1.248
7 C -0.489 4.489
8 H 0.030 0.970
9 C 0.017 3.983
10 C -0.058 4.058
11 C -0.045 4.045
12 Cl -0.070 7.070
13 C -0.105 4.105
14 C -0.100 4.100
15 C -0.105 4.105
16 C -0.045 4.045
17 Cl -0.070 7.070
18 H 0.265 0.735
19 H 0.035 0.965
20 H 0.033 0.967
21 H 0.162 0.838
22 H 0.183 0.817
23 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.870 -9.314 0.021 15.887
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.588 5.588
2 C -0.180 4.180
3 Si 0.752 3.248
4 H -0.192 1.192
5 H -0.208 1.208
6 H -0.171 1.171
7 C -0.527 4.527
8 H 0.048 0.952
9 C -0.021 4.021
10 C -0.059 4.059
11 C -0.072 4.072
12 Cl -0.041 7.041
13 C -0.124 4.124
14 C -0.118 4.118
15 C -0.124 4.124
16 C -0.072 4.072
17 Cl -0.041 7.041
18 H 0.074 0.926
19 H 0.054 0.946
20 H 0.051 0.949
21 H 0.180 0.820
22 H 0.200 0.800
23 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges 12.672 -9.048 0.025 15.571
hybrid contribution -0.433 1.262 -0.022 1.334
sum 12.239 -7.786 0.003 14.506
Atomic orbital electron populations
1.70024 1.07965 1.27848 1.52949 1.25702 0.95352 1.02465 0.94448
0.85969 0.79915 0.79596 0.79275 1.19188 1.20838 1.17125 1.20764
0.89587 0.92741 1.49586 0.95212 1.18730 0.95361 0.89895 0.98077
1.19912 0.96312 0.98403 0.91291 1.20900 1.05059 0.94965 0.86307
1.98339 1.94768 1.79928 1.31090 1.21471 0.98315 0.91307 1.01277
1.21421 0.99308 1.01519 0.89579 1.21469 0.98303 0.91319 1.01281
1.20897 1.05073 0.94949 0.86306 1.98338 1.94885 1.79826 1.31082
0.92580 0.94640 0.94893 0.82044 0.79991 0.82043
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.69 13.96 21.45 0.30 -59.39 14
2 C 0.02 1.02 5.47 84.65 0.46 1.48 14
3 Si 0.93 44.84 27.47 68.60 1.88 46.73 14
4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 14
5 H -0.28 -13.39 7.11 99.48 0.71 -12.68 14
6 H -0.25 -11.22 6.54 99.48 0.65 -10.57 14
7 C -0.49 -28.08 9.65 25.60 0.25 -27.83 14
8 H 0.03 1.92 7.98 -2.91 -0.02 1.89 14
9 C 0.02 0.80 3.37 29.10 0.10 0.90 14
10 C -0.06 -2.38 5.08 -19.82 -0.10 -2.48 14
11 C -0.05 -1.64 6.31 22.32 0.14 -1.49 14
12 Cl -0.07 -2.59 27.30 -2.72 -0.07 -2.66 14
13 C -0.11 -2.78 9.83 22.30 0.22 -2.56 14
14 C -0.10 -2.19 10.04 22.26 0.22 -1.97 14
15 C -0.11 -2.78 9.83 22.29 0.22 -2.56 14
16 C -0.05 -1.64 6.31 22.32 0.14 -1.49 14
17 Cl -0.07 -2.59 27.30 -2.72 -0.07 -2.67 14
18 H 0.27 15.67 8.31 -92.72 -0.77 14.90 14
19 H 0.04 1.71 5.96 -2.39 -0.01 1.70 14
20 H 0.03 1.57 6.34 -2.38 -0.02 1.56 14
21 H 0.16 3.22 8.06 -2.91 -0.02 3.20 14
22 H 0.18 2.22 8.06 -2.91 -0.02 2.20 14
23 H 0.16 3.22 8.06 -2.91 -0.02 3.20 14
Total: -1.00 -67.19 235.44 4.86 -62.34
By element:
Atomic # 1 Polarization: -7.51 SS G_CDS: 1.17 Total: -6.33 kcal
Atomic # 6 Polarization: -39.66 SS G_CDS: 1.65 Total: -38.01 kcal
Atomic # 7 Polarization: -59.69 SS G_CDS: 0.30 Total: -59.39 kcal
Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.73 kcal
Atomic # 17 Polarization: -5.18 SS G_CDS: -0.15 Total: -5.33 kcal
Total: -67.19 4.86 -62.34 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000039269047.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.497 kcal
(2) G-P(sol) polarization free energy of solvation -67.193 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.697 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.335 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.839 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.12 seconds