Wall clock time and date at job start Sun Mar 29 2020 21:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31370 * 1 3 3 Si 1.86802 * 120.00421 * 2 1 4 4 H 1.48496 * 109.46939 * 270.00058 * 3 2 1 5 5 H 1.48505 * 109.46683 * 29.99585 * 3 2 1 6 6 H 1.48498 * 109.47230 * 149.99646 * 3 2 1 7 7 C 1.39041 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00248 * 180.02562 * 7 2 1 9 9 N 1.36851 * 120.00477 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00570 * 179.97438 * 9 7 2 11 11 O 1.21663 * 119.99668 * 359.97438 * 10 9 7 12 12 C 1.47240 * 120.00011 * 179.97438 * 10 9 7 13 13 C 1.39359 * 120.32255 * 0.02567 * 12 10 9 14 14 C 1.38240 * 120.24193 * 179.97438 * 13 12 10 15 15 C 1.38098 * 120.82342 * 359.62820 * 14 13 12 16 16 C 1.38955 * 120.26855 * 0.61367 * 15 14 13 17 17 N 1.37892 * 133.34822 * 179.22612 * 16 15 14 18 18 H 0.97002 * 125.56902 * 0.02562 * 17 16 15 19 19 C 1.36692 * 108.86334 * 180.02562 * 17 16 15 20 20 C 1.34455 * 109.61970 * 359.97438 * 19 17 16 21 21 C 1.40605 * 119.68378 * 359.54468 * 16 15 14 22 22 H 0.96999 * 119.99700 * 0.02562 * 1 2 3 23 23 H 0.96999 * 119.99470 * 359.97438 * 9 7 2 24 24 H 1.08002 * 119.87465 * 359.97438 * 13 12 10 25 25 H 1.08002 * 119.58688 * 180.02562 * 14 13 12 26 26 H 1.08002 * 119.86500 * 179.88814 * 15 14 13 27 27 H 1.08005 * 125.19114 * 179.97438 * 19 17 16 28 28 H 1.08002 * 126.07526 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4953 2.0463 -1.4000 5 1 1.4452 2.6527 0.7000 6 1 3.5453 1.4401 0.7001 7 6 2.0088 -1.2042 0.0005 8 1 3.0889 -1.2043 0.0010 9 7 1.3246 -2.3894 0.0005 10 6 1.9984 -3.5566 0.0005 11 8 3.2151 -3.5566 0.0001 12 6 1.2622 -4.8317 0.0011 13 6 -0.1314 -4.8394 0.0011 14 6 -0.8210 -6.0376 0.0011 15 6 -0.1462 -7.2424 -0.0066 16 6 1.2431 -7.2671 -0.0016 17 7 2.1717 -8.2865 0.0067 18 1 1.9683 -9.2349 0.0105 19 6 3.4256 -7.7421 0.0089 20 6 3.3354 -6.4006 0.0017 21 6 1.9610 -6.0581 0.0016 22 1 -0.4850 0.8401 -0.0004 23 1 0.3546 -2.3893 0.0005 24 1 -0.6746 -3.9060 0.0011 25 1 -1.9010 -6.0312 0.0007 26 1 -0.7005 -8.1693 -0.0046 27 1 4.3480 -8.3039 0.0155 28 1 4.1636 -5.7075 0.0018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040855160.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:31 Heat of formation + Delta-G solvation = -1.251945 kcal Electronic energy + Delta-G solvation = -15014.590372 eV Core-core repulsion = 12415.872218 eV Total energy + Delta-G solvation = -2598.718154 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.30593 -40.03241 -37.47419 -36.06260 -33.42731 -32.86558 -30.46364 -29.71176 -27.07758 -24.52838 -22.63257 -21.98961 -21.23459 -20.08226 -18.66203 -17.68762 -16.93391 -16.66202 -15.87525 -15.76439 -15.70857 -14.99875 -14.92230 -14.56285 -13.77978 -13.54201 -13.49116 -12.98402 -12.71551 -12.43448 -12.33847 -12.26993 -12.11750 -11.57348 -10.66786 -10.33828 -10.08860 -9.15425 -8.59078 -8.53967 -5.97847 -0.16867 0.66578 1.39774 1.40020 1.54300 1.86066 2.17533 2.26689 2.30413 2.96471 3.17903 3.37639 3.98760 4.12868 4.19924 4.34181 4.40887 4.54579 4.76888 4.97218 5.03228 5.27691 5.34775 5.56225 5.59697 5.76302 5.80484 6.00750 6.21913 6.54607 6.83244 7.05302 7.47654 8.06185 8.63884 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.044796 B = 0.006730 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.901010 B = 4159.711274 C = 4774.765583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.012 4.012 3 Si 1.001 2.999 4 H -0.268 1.268 5 H -0.265 1.265 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.082 0.918 9 N -0.556 5.556 10 C 0.464 3.536 11 O -0.632 6.632 12 C -0.105 4.105 13 C -0.126 4.126 14 C -0.108 4.108 15 C -0.100 4.100 16 C 0.069 3.931 17 N -0.571 5.571 18 H 0.438 0.562 19 C 0.078 3.922 20 C -0.240 4.240 21 C -0.096 4.096 22 H 0.282 0.718 23 H 0.397 0.603 24 H 0.120 0.880 25 H 0.165 0.835 26 H 0.166 0.834 27 H 0.218 0.782 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 -16.213 0.018 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.212 4.212 3 Si 0.823 3.177 4 H -0.193 1.193 5 H -0.190 1.190 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.100 0.900 9 N -0.192 5.192 10 C 0.255 3.745 11 O -0.521 6.521 12 C -0.109 4.109 13 C -0.146 4.146 14 C -0.127 4.127 15 C -0.120 4.120 16 C -0.039 4.039 17 N -0.176 5.176 18 H 0.280 0.720 19 C -0.050 4.050 20 C -0.265 4.265 21 C -0.102 4.102 22 H 0.092 0.908 23 H 0.232 0.768 24 H 0.138 0.862 25 H 0.183 0.817 26 H 0.183 0.817 27 H 0.234 0.766 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.947 -16.172 0.025 16.289 hybrid contribution 0.044 0.996 -0.008 0.997 sum -1.903 -15.176 0.017 15.294 Atomic orbital electron populations 1.69655 1.07028 1.29829 1.48742 1.26202 0.96659 1.02674 0.95703 0.84826 0.77858 0.76124 0.78888 1.19305 1.18978 1.19666 1.19786 0.93012 0.83905 1.49881 0.90045 1.41905 1.09504 1.04688 1.63067 1.18512 0.87494 0.84617 0.83893 1.90507 1.15142 1.88031 1.58444 1.19637 0.94202 0.91656 1.05401 1.21311 0.91894 0.99975 1.01466 1.21051 1.01172 0.90121 1.00392 1.20515 0.89196 0.99912 1.02403 1.18404 0.92102 0.87104 1.06272 1.41710 1.03914 1.08224 1.63736 0.71995 1.22423 0.89246 0.92669 1.00704 1.20957 0.95577 0.96073 1.13906 1.18389 0.95009 0.91975 1.04797 0.90806 0.76763 0.86228 0.81745 0.81662 0.76573 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.62 13.05 21.68 0.28 -50.33 15 2 C -0.01 -0.64 5.50 84.95 0.47 -0.18 15 3 Si 1.00 43.97 29.55 68.60 2.03 46.00 15 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 15 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 7 C -0.34 -20.35 9.68 84.10 0.81 -19.54 15 8 H 0.08 5.21 7.15 -2.91 -0.02 5.19 15 9 N -0.56 -31.89 5.23 -310.14 -1.62 -33.51 15 10 C 0.46 26.21 7.71 86.61 0.67 26.88 15 11 O -0.63 -39.53 14.54 -4.23 -0.06 -39.59 15 12 C -0.11 -4.84 5.90 -19.92 -0.12 -4.96 15 13 C -0.13 -4.74 9.53 22.54 0.21 -4.53 15 14 C -0.11 -2.97 9.99 22.24 0.22 -2.75 15 15 C -0.10 -2.42 10.06 22.41 0.23 -2.19 15 16 C 0.07 2.05 7.26 38.94 0.28 2.33 15 17 N -0.57 -12.09 6.14 -187.59 -1.15 -13.24 15 18 H 0.44 4.92 8.96 -92.71 -0.83 4.09 15 19 C 0.08 1.91 11.83 83.07 0.98 2.89 15 20 C -0.24 -9.18 10.03 22.24 0.22 -8.96 15 21 C -0.10 -3.92 6.01 -21.15 -0.13 -4.05 15 22 H 0.28 14.42 8.31 -92.71 -0.77 13.65 15 23 H 0.40 21.47 5.92 -92.71 -0.55 20.92 15 24 H 0.12 4.54 6.39 -2.91 -0.02 4.52 15 25 H 0.17 3.16 8.06 -2.91 -0.02 3.14 15 26 H 0.17 2.39 8.06 -2.91 -0.02 2.37 15 27 H 0.22 3.00 8.06 -2.91 -0.02 2.98 15 28 H 0.12 5.33 7.00 -2.91 -0.02 5.31 15 Total: -1.00 -78.85 251.24 3.17 -75.68 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.16 Total: 30.05 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 3.86 Total: -15.05 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -2.49 Total: -97.08 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.06 Total: -39.59 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -78.85 3.17 -75.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040855160.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.423 kcal (2) G-P(sol) polarization free energy of solvation -78.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds