Wall clock time and date at job start Sun Mar 29 2020 21:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81002 * 109.47004 * 180.02562 * 11 10 9 13 13 C 1.76193 * 100.00049 * 180.02562 * 12 11 10 14 14 N 1.30308 * 126.17159 * 0.02562 * 13 12 11 15 15 N 1.26104 * 117.60720 * 179.97438 * 14 13 12 16 16 C 1.29328 * 117.97298 * 0.02562 * 15 14 13 17 17 S 1.76479 * 107.87951 * 359.75612 * 16 15 14 18 18 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 20 20 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 21 21 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 22 22 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 23 23 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 24 24 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 25 25 H 1.07998 * 126.05836 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 16 2.6562 -6.3629 -0.0019 13 6 1.5361 -7.7230 -0.0018 14 7 0.2352 -7.6479 -0.0018 15 7 -0.4126 -8.7299 -0.0022 16 6 0.2558 -9.8371 -0.0021 17 16 1.9737 -9.4329 -0.0086 18 1 -0.4849 0.8401 0.0004 19 1 0.6240 -2.5566 -0.8903 20 1 0.6246 -2.5571 0.8897 21 1 2.8725 -3.6048 0.8878 22 1 2.8712 -3.6040 -0.8921 23 1 0.8543 -5.0449 0.8894 24 1 0.8525 -5.0447 -0.8905 25 1 -0.1631 -10.8325 -0.0020 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042199816.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:02 Heat of formation + Delta-G solvation = 44.881363 kcal Electronic energy + Delta-G solvation = -11024.559505 eV Core-core repulsion = 8870.205569 eV Total energy + Delta-G solvation = -2154.353936 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 230.024 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.95197 -34.58053 -32.15102 -31.66523 -27.60632 -26.88782 -23.49792 -21.54649 -20.49673 -19.17770 -17.51002 -16.38050 -15.71550 -15.29475 -14.64976 -14.52983 -13.72869 -13.56524 -12.58163 -11.99999 -11.87904 -11.35086 -10.96300 -10.75238 -10.72662 -10.63272 -10.53118 -10.21093 -9.88339 -9.86132 -9.40857 -9.15594 -8.39392 -7.79718 -6.03821 -4.07267 0.16892 0.50340 1.04426 1.44859 2.23196 2.45243 3.30502 3.36903 3.39988 4.25587 4.42985 4.82307 5.23906 5.31816 5.40499 5.49147 6.02728 6.39610 6.57028 6.90185 7.59990 7.70518 7.94162 8.34093 8.40691 8.99014 9.57151 11.07347 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.076598 B = 0.004510 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.456103 B = 6207.545216 C = 6547.250668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.099 4.099 11 C -0.099 4.099 12 S 0.015 5.985 13 C 0.014 3.986 14 N -0.274 5.274 15 N -0.247 5.247 16 C -0.007 4.007 17 S 0.084 5.916 18 H 0.262 0.738 19 H 0.020 0.980 20 H 0.021 0.979 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 -18.857 -0.007 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.138 4.138 11 C -0.248 4.248 12 S 0.248 5.752 13 C -0.372 4.372 14 N -0.116 5.116 15 N -0.081 5.081 16 C -0.313 4.313 17 S 0.320 5.680 18 H 0.071 0.929 19 H 0.039 0.961 20 H 0.039 0.961 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 5.318 -18.564 -0.010 19.311 hybrid contribution -0.985 0.675 -0.006 1.194 sum 4.333 -17.889 -0.016 18.406 Atomic orbital electron populations 1.69969 1.06072 1.26762 1.50431 1.25027 0.94868 0.99328 0.95190 0.86565 0.79815 0.83317 0.78139 1.20615 1.21176 1.19833 1.21189 0.93080 0.90778 1.51142 0.92504 1.19093 0.93672 0.90405 0.97841 1.21579 0.99448 0.91085 1.01736 1.24075 0.99363 0.94202 1.07193 1.85879 1.07977 0.93255 1.88090 1.31831 0.98906 1.02056 1.04435 1.71784 1.01747 1.19694 1.18382 1.70747 1.30972 0.93941 1.12444 1.31108 0.91058 1.03410 1.05678 1.85723 1.11185 1.00595 1.70509 0.92879 0.96123 0.96104 0.92076 0.92072 0.88591 0.88592 0.76667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 15 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 15 9 C 0.03 0.73 4.97 -27.88 -0.14 0.59 15 10 C -0.10 -1.94 5.16 -26.73 -0.14 -2.07 15 11 C -0.10 -1.69 5.22 37.16 0.19 -1.49 15 12 S 0.01 0.21 22.31 -107.50 -2.40 -2.18 15 13 C 0.01 0.21 7.85 52.12 0.41 0.62 15 14 N -0.27 -4.49 10.96 31.32 0.34 -4.15 15 15 N -0.25 -3.62 11.55 30.50 0.35 -3.27 15 16 C -0.01 -0.07 12.68 51.71 0.66 0.59 15 17 S 0.08 0.87 23.54 -107.50 -2.53 -1.66 15 18 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 19 H 0.02 0.55 8.14 -51.93 -0.42 0.12 15 20 H 0.02 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.06 1.17 8.14 -51.93 -0.42 0.74 15 22 H 0.06 1.17 8.14 -51.93 -0.42 0.74 15 23 H 0.10 1.68 8.14 -51.91 -0.42 1.26 15 24 H 0.10 1.68 8.14 -51.92 -0.42 1.26 15 25 H 0.22 1.15 8.06 -52.49 -0.42 0.73 15 LS Contribution 255.90 15.07 3.86 3.86 Total: -1.00 -30.97 255.90 -6.59 -37.56 By element: Atomic # 1 Polarization: -3.00 SS G_CDS: -2.50 Total: -5.50 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 0.57 Total: -15.10 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 1.43 Total: -33.39 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -4.93 Total: -3.85 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.97 -6.59 -37.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042199816.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.438 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds