Wall clock time and date at job start Sun Mar 29 2020 21:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38619 * 119.86406 * 2 1 4 4 C 1.38582 * 120.54195 * 180.02562 * 3 2 1 5 5 C 1.37773 * 120.27079 * 359.68975 * 4 3 2 6 6 Cl 1.73603 * 120.14208 * 180.30181 * 5 4 3 7 7 C 1.40849 * 119.72273 * 0.56195 * 5 4 3 8 8 C 1.41284 * 120.26446 * 179.74289 * 7 5 4 9 9 H 1.07996 * 119.99428 * 135.04321 * 8 7 5 10 10 C 1.39941 * 119.99980 * 314.76462 * 8 7 5 11 11 N 1.30840 * 119.99856 * 339.72799 * 10 8 7 12 12 Si 1.86797 * 119.99944 * 159.73039 * 10 8 7 13 13 H 1.48506 * 109.47202 * 89.99684 * 12 10 8 14 14 H 1.48496 * 109.47413 * 209.99733 * 12 10 8 15 15 H 1.48507 * 109.47108 * 329.99790 * 12 10 8 16 16 C 1.37737 * 119.86516 * 180.02562 * 2 1 3 17 17 Cl 1.73605 * 120.13956 * 0.02562 * 16 2 1 18 18 H 1.08993 * 109.47412 * 269.98122 * 1 2 3 19 19 H 1.09002 * 109.46920 * 29.98141 * 1 2 3 20 20 H 1.09004 * 109.46858 * 149.98132 * 1 2 3 21 21 H 1.07997 * 119.72716 * 0.02562 * 3 2 1 22 22 H 1.08004 * 119.86179 * 180.02562 * 4 3 2 23 23 H 0.97005 * 120.00079 * 185.65332 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.2021 0.0000 4 6 3.5830 1.2185 -0.0005 5 6 4.2915 0.0369 0.0054 6 17 6.0274 0.0614 0.0126 7 6 3.6017 -1.1910 0.0000 8 6 4.3168 -2.4095 0.0005 9 1 4.0165 -3.2115 0.6584 10 6 5.4106 -2.5792 -0.8558 11 7 5.5410 -1.8150 -1.9098 12 14 6.6842 -3.8969 -0.4941 13 1 6.2860 -5.1653 -1.1558 14 1 8.0066 -3.4626 -1.0116 15 1 6.7727 -4.1105 0.9729 16 6 2.1929 -1.1945 -0.0005 17 17 1.3250 -2.6980 -0.0019 18 1 -0.3634 -0.0003 1.0276 19 1 -0.3633 0.8902 -0.5136 20 1 -0.3633 -0.8899 -0.5141 21 1 1.6506 2.1335 0.0004 22 1 4.1096 2.1615 -0.0001 23 1 6.2523 -1.9850 -2.5471 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044369030.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:10 Heat of formation + Delta-G solvation = -9.642613 kcal Electronic energy + Delta-G solvation = -11832.651684 eV Core-core repulsion = 9503.720152 eV Total energy + Delta-G solvation = -2328.931531 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.996 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.99505 -35.28943 -34.79133 -33.74680 -31.29141 -29.85842 -25.91200 -25.17803 -21.09297 -20.38764 -17.10471 -15.69057 -15.17056 -14.55317 -13.88647 -13.23316 -12.82076 -12.62891 -12.01424 -11.88950 -11.52992 -11.24555 -10.95826 -10.81978 -10.77757 -10.37829 -10.15104 -9.76783 -9.54208 -9.40197 -8.68201 -7.43659 -7.13674 -6.76870 -4.49009 2.43673 2.59473 3.09674 3.11644 3.17853 3.44467 3.90611 3.98196 4.52145 5.17365 5.74020 5.89195 6.20194 6.22589 6.24627 6.47659 6.84475 6.99848 7.18514 7.31181 7.46130 7.67324 7.83638 8.30502 8.57826 8.79056 10.21267 Molecular weight = 230.00amu Principal moments of inertia in cm(-1) A = 0.028218 B = 0.013477 C = 0.009652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.029395 B = 2077.056179 C = 2900.107994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.057 4.057 3 C -0.217 4.217 4 C -0.085 4.085 5 C -0.075 4.075 6 Cl -0.091 7.091 7 C 0.132 3.868 8 C -0.465 4.465 9 H 0.089 0.911 10 C 0.094 3.906 11 N -0.773 5.773 12 Si 0.898 3.102 13 H -0.270 1.270 14 H -0.276 1.276 15 H -0.259 1.259 16 C -0.107 4.107 17 Cl -0.102 7.102 18 H 0.060 0.940 19 H 0.056 0.944 20 H 0.064 0.936 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 1.759 1.913 3.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.058 4.058 3 C -0.237 4.237 4 C -0.104 4.104 5 C -0.103 4.103 6 Cl -0.062 7.062 7 C 0.128 3.872 8 C -0.493 4.493 9 H 0.107 0.893 10 C -0.127 4.127 11 N -0.396 5.396 12 Si 0.723 3.277 13 H -0.196 1.196 14 H -0.201 1.201 15 H -0.182 1.182 16 C -0.134 4.134 17 Cl -0.073 7.073 18 H 0.079 0.921 19 H 0.075 0.925 20 H 0.083 0.917 21 H 0.124 0.876 22 H 0.123 0.877 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.471 1.713 1.731 3.469 hybrid contribution 0.778 -0.656 -0.075 1.021 sum -1.693 1.057 1.655 2.593 Atomic orbital electron populations 1.20739 0.92534 1.01934 1.01359 1.19317 0.94806 0.91906 0.99775 1.20085 0.92874 0.95590 1.15113 1.20578 0.93821 0.95895 1.00136 1.20771 0.82617 0.93765 1.13175 1.98213 1.12423 1.98673 1.96919 1.17079 0.88728 0.92732 0.88631 1.19282 1.09911 0.99533 1.20616 0.89332 1.25622 0.96782 0.96271 0.94071 1.69782 1.28966 1.33685 1.07207 0.86430 0.80069 0.80804 0.80434 1.19571 1.20090 1.18228 1.20676 0.91550 0.84080 1.17127 1.98209 1.76410 1.35256 1.97461 0.92105 0.92540 0.91710 0.87582 0.87738 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.61 36.01 0.35 -1.51 14 2 C -0.06 -1.21 5.87 -104.66 -0.61 -1.82 14 3 C -0.22 -4.49 9.70 -39.31 -0.38 -4.87 14 4 C -0.09 -1.87 9.81 -39.62 -0.39 -2.26 14 5 C -0.08 -1.85 5.94 -38.76 -0.23 -2.08 14 6 Cl -0.09 -2.13 25.00 -51.86 -1.30 -3.42 14 7 C 0.13 3.39 5.25 -106.75 -0.56 2.83 14 8 C -0.47 -12.03 7.81 -37.79 -0.30 -12.32 14 9 H 0.09 2.27 7.75 -52.49 -0.41 1.86 14 10 C 0.09 2.33 3.78 -17.34 -0.07 2.26 14 11 N -0.77 -19.82 11.21 55.55 0.62 -19.20 14 12 Si 0.90 19.14 29.61 -169.99 -5.03 14.11 14 13 H -0.27 -5.65 7.11 56.52 0.40 -5.25 14 14 H -0.28 -5.79 7.11 56.52 0.40 -5.39 14 15 H -0.26 -5.48 7.11 56.52 0.40 -5.08 14 16 C -0.11 -2.52 6.37 -38.77 -0.25 -2.77 14 17 Cl -0.10 -2.18 26.27 -51.86 -1.36 -3.54 14 18 H 0.06 0.95 8.14 -51.93 -0.42 0.52 14 19 H 0.06 0.84 8.08 -51.93 -0.42 0.43 14 20 H 0.06 1.10 6.88 -51.93 -0.36 0.74 14 21 H 0.11 1.88 8.06 -52.49 -0.42 1.45 14 22 H 0.10 2.05 8.06 -52.48 -0.42 1.63 14 23 H 0.28 6.71 8.31 -40.82 -0.34 6.37 14 LS Contribution 232.82 15.07 3.51 3.51 Total: -1.00 -26.22 232.82 -7.59 -33.80 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: -1.59 Total: -2.72 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -2.44 Total: -22.53 kcal Atomic # 7 Polarization: -19.82 SS G_CDS: 0.62 Total: -19.20 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Atomic # 17 Polarization: -4.31 SS G_CDS: -2.66 Total: -6.97 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -26.22 -7.59 -33.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369030.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.160 kcal (2) G-P(sol) polarization free energy of solvation -26.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds